"""
Bootstrap the Galaxy framework.
This should not be called directly! Use the run.sh script in Galaxy's
top level directly.
"""
from __future__ import absolute_import
import os
import sys
sys.path.insert(1, os.path.abspath(os.path.join(os.path.dirname(__file__), os.pardir, 'lib')))
from galaxy.util.pastescript import serve
from check_python import check_python # noqa: I100, I201
# ensure supported version
try:
check_python()
except Exception:
sys.exit(1)
if 'LOG_TEMPFILES' in os.environ:
from log_tempfile import TempFile
_log_tempfile = TempFile()
serve.run()
"""
import logging
logging.basicConfig()
log = logging.getLogger(__name__)
import cPickle
import json
import os
import sys
# ensure supported version
from check_python import check_python
try:
check_python()
except:
sys.exit(1)
new_path = [os.path.join(os.getcwd(), "lib")]
new_path.extend(sys.path[1:]) # remove scripts/ from the path
sys.path = new_path
from galaxy import eggs
import pkg_resources
import galaxy.model.mapping # need to load this before we unpickle, in order to setup properties assigned by the mappers
galaxy.model.Job(
) # this looks REAL stupid, but it is REQUIRED in order for SA to insert parameters into the classes defined by the mappers --> it appears that instantiating ANY mapper'ed class would suffice here
from galaxy.util import stringify_dictionary_keys
from sqlalchemy.orm import clear_mappers
from galaxy.objectstore import build_object_store_from_config