def init_cml(self,
command,
is_run_background=False,
is_nohup=False,
workdirpath=None):
self.optiongroupname = 'cml-options'
self.optiongroupnames.append(self.optiongroupname)
attrsman = self.get_attrsman()
self.pathmetatypes = ['filepath', 'dirpath', 'filepaths', 'dirpaths']
self.workdirpath = workdirpath
self._command = attrsman.add(
cm.AttrConf('_command',
command,
groupnames=['_private'],
perm='r',
name='command',
info='Command to be executed.'))
self.pid = attrsman.add(
cm.AttrConf(
'pid',
-1,
groupnames=['_private'],
perm='r',
name='Process ID',
info="The system's Process ID",
))
self.is_run_background = attrsman.add(
cm.AttrConf(
'is_run_background',
is_run_background,
groupnames=['parameters', 'advanced'],
perm='rw',
name='Run in background',
info='If set, process will run in background.',
))
self.is_nohup = attrsman.add(
cm.AttrConf(
'is_nohup',
is_nohup,
groupnames=[
'parameters',
'advanced',
],
perm='rw',
name='No hangup',
info=
"""If set, process will run in the background and will continue to run after logout. (Currently on UNIX platforms only.) """,
))
def _init_common(self, ident, parent=None, name=None, **kwargs):
self._init_objman(ident=ident, parent=parent, name=name, **kwargs)
attrsman = self.set_attrsman(cm.Attrsman(self))
self.optiongroupnames = ['options']
#self.net = attrsman.add( cm.ObjConf( network.Network(self) ) )
self.status = attrsman.add(
cm.AttrConf(
'status',
'preparation',
groupnames=['_private', 'parameters'],
perm='r',
name='Status',
info='Process status: preparation-> running -> success|error.')
)
def add_option(self, option, value, **kwargs):
kwargs0 = {
'cml': None,
'groupnames': [],
'perm': 'rw',
'is_save': True,
'name': None,
'info': '',
}
kwargs0.update(kwargs)
if not (self.optiongroupname in kwargs0['groupnames']):
kwargs0['groupnames'] += [self.optiongroupname]
# print '\nadd_option', option, value,kwargs0
default = self.get_attrsman().add(cm.AttrConf(option, value,
**kwargs0))
setattr(self, option, default)
def add_option(self, option, value, **kwargs):
"""
option = string with option
value = value of option
name = human readable name
info = help info
cml = string to be specified if command line string different from option
"""
kwargs0 = {
'cml': None,
'groupnames': [],
'perm': 'rw',
'is_save': True,
'name': None,
'info': '',
}
kwargs0.update(kwargs)
if not ('options' in kwargs0['groupnames']):
kwargs0['groupnames'] += ['options']
default = self.attrs.add(cm.AttrConf(option, value, **kwargs0))
setattr(self, option, default)
def __init__(self,
ident,
command=None,
parent=None,
name=None,
is_inputfilelist=True,
is_outputfilelist=True,
is_force=False,
is_run_background=False,
is_nohup=False,
workdirpath=None):
self._init_objman(ident, parent=parent, name=name)
self.attrs = self.set_attrman(cm.AttrsManager(self, 'attrs'))
if command == None:
command_default = ''
else:
command_default = command
self.set_workdirpath(workdirpath)
self.status = self.attrs.add(
cm.AttrConf(
'status',
'preparation',
groupnames=['parameters'],
perm='r',
metatype='internal',
name='Status',
info='Process status: preparation-> running -> success|error.')
)
self._command = self.attrs.add(
cm.AttrConf('_command',
command_default,
groupnames=['parameters', '_private', 'advanced'],
perm='r',
metatype='internal',
name='command',
info='Command to be executed.'))
self.progress = self.attrs.add(
cm.AttrConf(
'progress',
0.0,
groupnames=['parameters'],
perm='r',
metatype='progress',
unit='%',
name='Progress',
info='Indicates the percentage of completion of the process.'))
self.pid = self.attrs.add(
cm.AttrConf(
'pid',
-1,
groupnames=['parameters', 'advanced'],
perm='r',
name='Process ID',
info="The system's Process ID",
))
self.is_force = self.attrs.add(
cm.AttrConf(
'is_force',
is_force,
groupnames=['parameters', 'advanced'],
perm='rw',
name='is_force',
info=
'If set, process will be executed even if output files exist.',
))
self.is_run_background = self.attrs.add(
cm.AttrConf(
'is_run_background',
is_run_background,
groupnames=['parameters', 'advanced'],
perm='rw',
name='Run in background',
info='If set, process will run in background.',
))
self.is_nohup = self.attrs.add(
cm.AttrConf(
'is_nohup',
is_nohup,
groupnames=['parameters', 'advanced'],
perm='rw',
name='No hangup',
info=
"""If set, process will run in the background and will continue to run after logout. (Currently on UNIX platforms only.) """,
))
if is_inputfilelist:
self.files_input = self.add_tableman(
cm.TableManager(ident='files_input',
parent=self,
name='Input files',
is_keyindex=True), )
self.files_input.add(
cm.DictConf(
'filename',
'',
groupnames=['input'],
perm='rw',
name='Name',
info='File name of input file',
))
self.files_input.add(
cm.DictConf(
'is_existent',
False,
groupnames=['output'],
perm='r',
name='Exists?',
info='If set, this input file is exists.',
))
self.files_input.add(
cm.DictConf(
'is_required',
True,
groupnames=['output'],
perm='r',
name='Required?',
info='If set, this input file is required.',
))
self.files_input.add(
cm.DictConf(
'filepath',
'',
groupnames=['input'],
perm='rw',
metatype='filepath',
name='Path',
info='Filepath of input file',
))
self.files_input.add(
cm.DictConf(
'fileoption',
'',
groupnames=['input', 'advanced'],
perm='r',
name='Option',
info='Command line option',
))
self.files_input.add(
cm.DictConf(
'fileinfo',
'',
groupnames=['input', 'advanced'],
perm='rw',
name='Info',
info='File info of input file',
))
self.files_input.add(
cm.DictConf(
'wildcards',
'',
groupnames=['input', 'advanced'],
perm='rw',
name='wildcards',
info='Wildcards for file filtering',
))
if is_outputfilelist:
self.files_output = self.add_tableman(
cm.TableManager(ident='files_output',
parent=self,
name='Output files',
is_keyindex=True), )
self.files_output.add(
cm.DictConf(
'filename',
'',
groupnames=['output'],
perm='rw',
name='Name',
info='File name of output file',
))
self.files_output.add(
cm.DictConf(
'filepath',
'',
groupnames=['output'],
perm='rw',
metatype='filepath',
name='Path',
info='Filepath of output file',
))
self.files_output.add(
cm.DictConf(
'fileoption',
'',
groupnames=['advanced'],
perm='r',
name='Option',
info='Command line option',
))
self.files_output.add(
cm.DictConf(
'fileinfo',
'',
groupnames=['output', 'advanced'],
perm='r',
is_save=True,
name='Info',
info='File info of output file',
))
self.files_output.add(
cm.DictConf(
'wildcards',
'',
groupnames=['output', 'advanced'],
perm='rw',
is_save=True,
name='wildcards',
info='Wildcards for file filtering',
))
