def test_process_args_expected_keywords(self, args): res = process_args(args) expected_keys = [ "input_file", "output_file", "input_file_format", "output_file_format", "complement", "gaps", "mode", "use_log", ] assert sorted(res.keys()) == sorted(expected_keys)
def test_process_args_default_use_logs(self, args): args.log = None res = process_args(args) assert res["use_log"] is False
def test_process_args_default_output_file(self, args): args.output = None res = process_args(args) assert res["output_file"] == f"{args.input}.clipkit"
def test_process_args_default_gaps(self, args): res = process_args(args) assert res["gaps"] == 0.9
def test_process_args_default_complementary(self, args): args.complementary = None res = process_args(args) assert res["complement"] is False
def test_process_args_default_mode(self, args): res = process_args(args) assert res["mode"] == TrimmingMode.gappy
def test_process_args_in_equals_out(self, args): args.output = args.input with pytest.raises(SystemExit): process_args(args)
def test_process_args_input_file_dne(self, args): args.input = "some/file/that/doesnt/exist" with pytest.raises(SystemExit): process_args(args)