def test_import_adaptive_data_to_database(self):
# Make a test sample
p = Patient()
p.save()
s = Sample(patient=p)
s.save()
# Model can read in a file
Clonotype.import_adaptive(s, 'clonotypes/tests/data/test_adaptive.tsv')
all_clonotypes = Clonotype.objects.all()
self.assertEquals(len(all_clonotypes), 100)
def handle(self, *args, **options):
try:
sample_id, tsv_filename = args
# self.stdout.write(" ".join(args))
self.stdout.write(sample_id + " " + tsv_filename)
except:
raise BaseException("Incorrect number of arguments for import")
try:
sample = Sample.objects.get(id=sample_id)
except:
raise BaseException(
"Sample with sample id " + sample_id + " not found.")
Clonotype.import_adaptive(sample, tsv_filename)
