def main() :
#----------------------- Defining utility command-line interface -------------------------
an_usage_description = "%prog"
from ls_options import usage_description as usage_description_options
an_usage_description += usage_description_options()
from cloudflu import VERSION
a_version = "%s" % VERSION
from optparse import IndentedHelpFormatter
a_help_formatter = IndentedHelpFormatter( width = 127 )
from optparse import OptionParser
an_option_parser = OptionParser( usage = an_usage_description, version = a_version, formatter = a_help_formatter )
# Definition of the command line arguments
from ls_options import add as add_options
add_options( an_option_parser )
amazon.security_options.add( an_option_parser )
common.options.add( an_option_parser )
#------------------ Extracting and verifying command-line arguments ----------------------
an_options, an_args = an_option_parser.parse_args()
common.options.extract( an_option_parser )
AWS_ACCESS_KEY_ID, AWS_SECRET_ACCESS_KEY = amazon.security_options.extract( an_option_parser )
from ls_options import extract as extract_options
a_study_name = extract_options( an_option_parser )
print_i( "--------------------------- Looking for study root ------------------------------\n" )
a_root_object = TRootObject.get( AWS_ACCESS_KEY_ID, AWS_SECRET_ACCESS_KEY )
print_d( "a_root_object = %s\n" % a_root_object )
if a_study_name == None :
print_i( "---------------------------- Reading the studies --------------------------------\n" )
read_studies( a_root_object, 0 )
pass
else :
a_study_object = None
try:
a_study_object = TStudyObject.get( a_root_object, a_study_name )
except Exception, exc:
print_e( str( exc ) )
pass
print_d( "a_study_object = %s\n" % a_study_object )
print_i( "---------------------------- Reading the study files ----------------------------\n" )
read_files( a_study_object, 0 )
pass
def entry_point( the_root_object, the_study_name = None, the_booked = False ) :
a_spent_time = Timer()
if the_study_name == None :
import uuid; the_study_name = 'tmp-' + str( uuid.uuid4() )
pass
print_d( "the_study_name = '%s'\n" % the_study_name )
a_study_object = None
if the_booked == True :
a_study_object = TStudyObject.get( the_root_object, the_study_name )
else:
from cloudflu.preferences import get
a_location = get( 'amazon.data_transfer.location' )
a_study_object = TStudyObject.create( the_root_object, a_location, the_study_name )
pass
print_d( "a_study_object = %s\n" % a_study_object )
print_d( "a_spent_time = %s, sec\n" % a_spent_time )
return a_study_object
def main() :
#----------------------- Defining utility command-line interface -------------------------
an_usage_description = "%prog"
from study_rm_options import usage_description as usage_description_options
an_usage_description += usage_description_options()
from cloudflu import VERSION
a_version = "%s" % VERSION
from optparse import IndentedHelpFormatter
a_help_formatter = IndentedHelpFormatter( width = 127 )
from optparse import OptionParser
an_option_parser = OptionParser( usage = an_usage_description, version = a_version, formatter = a_help_formatter )
#----------------------- Definition of the command line arguments ------------------------
amazon.security_options.add( an_option_parser )
common.concurrency_options.add( an_option_parser )
common.communication_options.add( an_option_parser )
common.options.add( an_option_parser )
#------------------ Extracting and verifying command-line arguments ----------------------
an_options, an_args = an_option_parser.parse_args()
common.options.extract( an_option_parser )
common.communication_options.extract( an_option_parser )
a_number_threads = common.concurrency_options.extract( an_option_parser )
AWS_ACCESS_KEY_ID, AWS_SECRET_ACCESS_KEY = amazon.security_options.extract( an_option_parser )
from study_rm_options import extract as extract_options
a_study_names = extract_options( an_option_parser )
print_d( "\n--------------------------- Canonical substitution ------------------------\n" )
import sys; an_engine = sys.argv[ 0 ]
from study_rm_options import compose as compose_options
a_call = "%s %s" % ( an_engine, compose_options( a_study_names ) )
print_d( a_call + '\n' )
print_i( "--------------------------- Looking for study object ----------------------------\n" )
a_root_object = TRootObject.get( AWS_ACCESS_KEY_ID, AWS_SECRET_ACCESS_KEY )
print_d( "a_root_object = %s\n" % a_root_object )
a_study_objects = []
for a_study_name in a_study_names :
if a_study_name == None :
continue
a_study_object = None
try:
a_study_object = TStudyObject.get( a_root_object, a_study_name )
except Exception, exc:
print_e( '%s\n' % exc, False )
continue
a_study_objects.append( a_study_object )
pass
def main() :
#----------------------- Defining utility command-line interface -------------------------
import data_transfer_options
import download_options
an_usage_description = "%prog"
an_usage_description += data_transfer_options.usage_description()
an_usage_description += download_options.usage_description()
from cloudflu import VERSION
a_version = "%s" % VERSION
from optparse import IndentedHelpFormatter
a_help_formatter = IndentedHelpFormatter( width = 127 )
from optparse import OptionParser
an_option_parser = OptionParser( usage = an_usage_description, version = a_version, formatter = a_help_formatter )
#----------------------- Definition of the command line arguments ------------------------
data_transfer_options.add( an_option_parser )
download_options.add( an_option_parser )
amazon.security_options.add( an_option_parser )
common.concurrency_options.add( an_option_parser )
common.communication_options.add( an_option_parser )
common.options.add( an_option_parser )
#------------------ Extracting and verifying command-line arguments ----------------------
an_options, an_args = an_option_parser.parse_args()
common.options.extract( an_option_parser )
common.communication_options.extract( an_option_parser )
a_number_threads = common.concurrency_options.extract( an_option_parser )
AWS_ACCESS_KEY_ID, AWS_SECRET_ACCESS_KEY = amazon.security_options.extract( an_option_parser )
a_located_files, an_output_dir, a_fresh, a_wait, a_remove = download_options.extract( an_option_parser )
a_study_name = data_transfer_options.extract( an_option_parser )
print_d( "\n--------------------------- Canonical substitution ------------------------\n" )
import sys; an_engine = sys.argv[ 0 ]
from download_options import compose as compose_options
a_call = "%s %s %s" % ( an_engine,
data_transfer_options.compose( a_study_name ),
download_options.compose( a_located_files, an_output_dir, a_fresh, a_wait, a_remove ) )
print_d( a_call + '\n' )
print_i( "--------------------------- Looking for study object ----------------------------\n" )
a_root_object = TRootObject.get( AWS_ACCESS_KEY_ID, AWS_SECRET_ACCESS_KEY )
print_d( "a_root_object = %s\n" % a_root_object )
a_study_object = None
try:
a_study_object = TStudyObject.get( a_root_object, a_study_name )
except Exception, exc:
print_e( '%s\n' % exc )
pass
def main() :
#----------------------- Defining utility command-line interface -------------------------
import data_transfer_options
import upload_start_options
import data_seeding_options
an_usage_description = "%prog"
an_usage_description += data_transfer_options.usage_description()
an_usage_description += upload_start_options.usage_description()
from cloudflu import VERSION
a_version = "%s" % VERSION
from optparse import IndentedHelpFormatter
a_help_formatter = IndentedHelpFormatter( width = 127 )
from optparse import OptionParser
an_option_parser = OptionParser( usage = an_usage_description, version = a_version, formatter = a_help_formatter )
#----------------------- Definition of the command line arguments ------------------------
data_transfer_options.add( an_option_parser )
upload_start_options.add( an_option_parser )
data_seeding_options.add( an_option_parser )
common.concurrency_options.add( an_option_parser )
common.communication_options.add( an_option_parser )
amazon.security_options.add( an_option_parser )
common.options.add( an_option_parser )
#------------------ Extracting and verifying command-line arguments ----------------------
an_options, an_args = an_option_parser.parse_args()
common.options.extract( an_option_parser )
AWS_ACCESS_KEY_ID, AWS_SECRET_ACCESS_KEY = amazon.security_options.extract( an_option_parser )
common.communication_options.extract( an_option_parser )
a_number_threads = common.concurrency_options.extract( an_option_parser )
an_upload_seed_size = data_seeding_options.extract( an_option_parser )
a_file2locations = upload_start_options.extract( an_option_parser )
a_study_name = data_transfer_options.extract( an_option_parser )
print_i( "------------------------------- Canonical substitution --------------------------\n" )
import sys; an_engine = sys.argv[ 0 ]
a_call = "%s %s" % ( an_engine,
data_transfer_options.compose( a_study_name ) )
print_d( a_call + '\n' )
print_i( "--------------------------- Defining the study object ---------------------------\n" )
a_root_object = TRootObject.get( AWS_ACCESS_KEY_ID, AWS_SECRET_ACCESS_KEY )
print_d( "a_root_object = %s\n" % a_root_object )
a_study_object = TStudyObject.get( a_root_object, a_study_name )
print_d( "a_study_object = %s\n" % a_study_object )
print_i( "-------------------------- Running actual functionality -------------------------\n" )
a_study_object = entry_point( a_study_object, a_file2locations, an_upload_seed_size, a_number_threads )
print_i( "-------------------- Printing succussive pipeline arguments ---------------------\n" )
print a_study_name
print_i( "------------------------------- Canonical substitution --------------------------\n" )
print_d( a_call + '\n' )
print_i( "-------------------------------------- OK ---------------------------------------\n" )
pass
def main() :
#----------------------- Defining utility command-line interface -------------------------
an_usage_description = "%prog"
from study_seal_options import usage_description as usage_description_options
an_usage_description += usage_description_options()
from cloudflu import VERSION
a_version = "%s" % VERSION
from optparse import IndentedHelpFormatter
a_help_formatter = IndentedHelpFormatter( width = 127 )
from optparse import OptionParser
an_option_parser = OptionParser( usage = an_usage_description, version = a_version, formatter = a_help_formatter )
#----------------------- Definition of the command line arguments ------------------------
from study_seal_options import add as add_options
add_options( an_option_parser )
amazon.security_options.add( an_option_parser )
common.concurrency_options.add( an_option_parser )
common.communication_options.add( an_option_parser )
common.options.add( an_option_parser )
#------------------ Extracting and verifying command-line arguments ----------------------
an_options, an_args = an_option_parser.parse_args()
common.options.extract( an_option_parser )
common.communication_options.extract( an_option_parser )
a_number_threads = common.concurrency_options.extract( an_option_parser )
AWS_ACCESS_KEY_ID, AWS_SECRET_ACCESS_KEY = amazon.security_options.extract( an_option_parser )
from study_seal_options import extract as extract_options
a_study_name = extract_options( an_option_parser )
print_d( "\n--------------------------- Canonical substitution ------------------------\n" )
import sys; an_engine = sys.argv[ 0 ]
from study_seal_options import compose as compose_options
a_call = "%s %s" % ( an_engine, compose_options( a_study_name ) )
print_d( a_call + '\n' )
print_i( "--------------------------- Defining the study object ---------------------------\n" )
a_spent_time = Timer()
a_root_object = TRootObject.get( AWS_ACCESS_KEY_ID, AWS_SECRET_ACCESS_KEY )
print_d( "a_root_object = %s\n" % a_root_object )
a_study_object = TStudyObject.get( a_root_object, a_study_name )
print_d( "a_study_object = %s\n" % a_study_object )
a_study_object.seal()
print_d( "is sealed : %r\n" % a_study_object.sealed() )
print_d( "a_spent_time = %s, sec\n" % a_spent_time )
print_i( "-------------------- Printing succussive pipeline arguments ---------------------\n" )
print a_study_name
print_d( "\n--------------------------- Canonical substitution ------------------------\n" )
print_d( a_call + '\n' )
print_i( "-------------------------------------- OK ---------------------------------------\n" )
pass
def main() :
#----------------------- Defining utility command-line interface -------------------------
an_usage_description = "%prog"
from rm_options import usage_description as usage_description_options
an_usage_description += usage_description_options()
from cloudflu import VERSION
a_version = "%s" % VERSION
from optparse import IndentedHelpFormatter
a_help_formatter = IndentedHelpFormatter( width = 127 )
from optparse import OptionParser
an_option_parser = OptionParser( usage = an_usage_description, version = a_version, formatter = a_help_formatter )
#----------------------- Definition of the command line arguments ------------------------
from rm_options import add as add_options
add_options( an_option_parser )
amazon.security_options.add( an_option_parser )
common.concurrency_options.add( an_option_parser )
common.communication_options.add( an_option_parser )
common.options.add( an_option_parser )
#------------------ Extracting and verifying command-line arguments ----------------------
an_options, an_args = an_option_parser.parse_args()
common.options.extract( an_option_parser )
common.communication_options.extract( an_option_parser )
a_number_threads = common.concurrency_options.extract( an_option_parser )
AWS_ACCESS_KEY_ID, AWS_SECRET_ACCESS_KEY = amazon.security_options.extract( an_option_parser )
from rm_options import extract as extract_options
a_study_name, a_located_files = extract_options( an_option_parser )
print_i( "--------------------------- Looking for study object ----------------------------\n" )
a_root_object = TRootObject.get( AWS_ACCESS_KEY_ID, AWS_SECRET_ACCESS_KEY )
print_d( "a_root_object = %s\n" % a_root_object )
a_study_object = TStudyObject.get( a_root_object, a_study_name )
print_d( "a_study_object = %s\n" % a_study_object )
print_i( "-------------------------- Removing study files -----------------------------\n" )
a_worker_pool = WorkerPool( len( a_located_files ) )
a_deleter = lambda the_object, the_number_threads, the_printing_depth : \
the_object.delete( the_number_threads, the_printing_depth )
for a_located_file in a_located_files :
print_d( "a_located_file = %s\n" % a_located_file )
a_file_object = TFileObject.get( a_study_object, a_located_file )
print_d( "a_file_object = %s\n" % a_file_object, 1 )
a_worker_pool.charge( a_deleter, ( a_file_object, a_number_threads, 2 ) )
pass
a_worker_pool.shutdown()
a_worker_pool.join()
print_i( "------------------- Printing succussive pipeline arguments ----------------------\n" )
print a_study_name
print_i( "-------------------------------------- OK ---------------------------------------\n" )
pass