def triplets_get_data(config, net, dataloader, sobel):
num_batches = len(dataloader)
flat_targets_all = torch.zeros((num_batches * config.batch_sz),
dtype=torch.int32).cuda()
flat_preds_all = torch.zeros((num_batches * config.batch_sz),
dtype=torch.int32).cuda()
num_test = 0
for b_i, batch in enumerate(dataloader):
imgs = batch[0].cuda()
if sobel:
imgs = sobel_process(imgs, config.include_rgb)
flat_targets = batch[1]
with torch.no_grad():
x_outs = net(imgs)
assert (x_outs.shape[1] == config.output_k)
assert (len(x_outs.shape) == 2)
num_test_curr = flat_targets.shape[0]
num_test += num_test_curr
start_i = b_i * config.batch_sz
flat_preds_curr = torch.argmax(x_outs, dim=1) # along output_k
flat_preds_all[start_i:(start_i + num_test_curr)] = flat_preds_curr
flat_targets_all[start_i:(start_i + num_test_curr)] = flat_targets.cuda()
flat_preds_all = flat_preds_all[:num_test]
flat_targets_all = flat_targets_all[:num_test]
return flat_preds_all, flat_targets_all
def get_dlen(net_features, dataloader, include_rgb=None,
penultimate_features=False):
for i, (imgs, _) in enumerate(dataloader):
imgs = Variable(sobel_process(imgs.cuda(), include_rgb)).cpu()
x_features = net_features(imgs, trunk_features=True,
penultimate_features=penultimate_features)
x_features = x_features.view(x_features.shape[0], -1)
dlen = x_features.shape[1]
break
return dlen
def assess_acc_block(net, test_loader, gt_k=None, include_rgb=None,
penultimate_features=False, contiguous_sz=None):
total = 0
all = None
all_targets = None
for i, (imgs, targets) in enumerate(test_loader):
imgs = Variable(sobel_process(imgs.cuda(), include_rgb))
with torch.no_grad():
x_out = net(imgs, penultimate_features=penultimate_features)
bn, dlen = x_out.shape
if all is None:
all = np.zeros((len(test_loader) * bn, dlen))
all_targets = np.zeros(len(test_loader) * bn)
all[total:(total + bn), :] = x_out.cpu().numpy()
all_targets[total:(total + bn)] = targets.numpy()
total += bn
# 40000
all = all[:total, :]
all_targets = all_targets[:total]
num_orig, leftover = divmod(total, contiguous_sz)
assert (leftover == 0)
all = all.reshape((num_orig, contiguous_sz, dlen))
all = all.sum(axis=1, keepdims=False) / float(contiguous_sz)
all_targets = all_targets.reshape((num_orig, contiguous_sz))
# sanity check
all_targets_avg = all_targets.astype("int").sum(axis=1) / contiguous_sz
all_targets = all_targets[:, 0].astype("int")
assert (np.array_equal(all_targets_avg, all_targets))
preds = np.argmax(all, axis=1).astype("int")
assert (preds.min() >= 0 and preds.max() < gt_k)
assert (all_targets.min() >= 0 and all_targets.max() < gt_k)
if not (preds.shape == all_targets.shape):
print(preds.shape)
print(all_targets.shape)
assert (False)
assert (preds.shape == (num_orig,))
correct = (preds == all_targets).sum()
return correct / float(num_orig)
def assess_acc(net, test_loader, gt_k=None, include_rgb=None,
penultimate_features=False):
correct = 0
total = 0
for i, (imgs, targets) in enumerate(test_loader):
imgs = Variable(sobel_process(imgs.cuda(), include_rgb))
with torch.no_grad():
x_out = net(imgs, penultimate_features=penultimate_features)
# bug fix!!
preds = np.argmax(x_out.cpu().numpy(), axis=1).astype("int")
targets = targets.numpy().astype("int")
assert (preds.min() >= 0 and preds.max() < gt_k)
assert (targets.min() >= 0 and targets.max() < gt_k)
assert (preds.shape == targets.shape)
correct += (preds == targets).sum()
total += preds.shape[0]
return correct / float(total)
def triplets_get_data_kmeans_on_features(config, net, dataloader, sobel):
# ouput of network is features (not softmaxed)
num_batches = len(dataloader)
flat_targets_all = torch.zeros((num_batches * config.batch_sz),
dtype=torch.int32).cuda()
features_all = np.zeros((num_batches * config.batch_sz, config.output_k),
dtype=np.float32)
num_test = 0
for b_i, batch in enumerate(dataloader):
imgs = batch[0].cuda()
if sobel:
imgs = sobel_process(imgs, config.include_rgb)
flat_targets = batch[1]
with torch.no_grad():
x_outs = net(imgs)
assert (x_outs.shape[1] == config.output_k)
assert (len(x_outs.shape) == 2)
num_test_curr = flat_targets.shape[0]
num_test += num_test_curr
start_i = b_i * config.batch_sz
features_all[start_i:(start_i + num_test_curr), :] = x_outs.cpu().numpy()
flat_targets_all[start_i:(start_i + num_test_curr)] = flat_targets.cuda()
features_all = features_all[:num_test, :]
flat_targets_all = flat_targets_all[:num_test]
kmeans = KMeans(n_clusters=config.gt_k).fit(features_all)
flat_preds_all = torch.from_numpy(kmeans.labels_).cuda()
assert (flat_targets_all.shape == flat_preds_all.shape)
assert (max(flat_preds_all) < config.gt_k)
return flat_preds_all, flat_targets_all
if e_i in config.lr_schedule:
optimiser = update_lr(optimiser, lr_mult=config.lr_mult)
avg_loss = 0. # over heads and head_epochs (and sub_heads)
avg_loss_count = 0
sys.stdout.flush()
iterators = (d for d in train_dataloaders)
b_i = 0
for tup in itertools.izip(*iterators):
net.module.zero_grad()
# no sobel yet
imgs_orig = sobel_process(tup[0][0].cuda(), config.include_rgb)
imgs_pos = sobel_process(tup[1][0].cuda(), config.include_rgb)
imgs_neg = sobel_process(tup[2][0].cuda(), config.include_rgb)
outs_orig = net(imgs_orig)
outs_pos = net(imgs_pos)
outs_neg = net(imgs_neg)
curr_loss = triplets_loss(outs_orig, outs_pos, outs_neg)
if ((b_i % 100) == 0) or (e_i == next_epoch and b_i < 10):
print("Model ind %d epoch %d batch %d "
"loss %f time %s" % \
(config.model_ind, e_i, b_i, curr_loss.item(), datetime.now()))
sys.stdout.flush()
actual_batch_start = d_i * curr_batch_sz
actual_batch_end = actual_batch_start + curr_batch_sz
all_imgs[actual_batch_start:actual_batch_end, :, :, :] = \
imgs_curr.cuda()
all_imgs_tf[actual_batch_start:actual_batch_end, :, :, :] = \
imgs_tf_curr.cuda()
if not (curr_batch_sz == config.dataloader_batch_sz):
print("last batch sz %d" % curr_batch_sz)
curr_total_batch_sz = curr_batch_sz * config.num_dataloaders
all_imgs = all_imgs[:curr_total_batch_sz, :, :, :]
all_imgs_tf = all_imgs_tf[:curr_total_batch_sz, :, :, :]
all_imgs = sobel_process(all_imgs, config.include_rgb)
all_imgs_tf = sobel_process(all_imgs_tf, config.include_rgb)
x_outs = net(all_imgs, head=head)
x_tf_outs = net(all_imgs_tf, head=head)
avg_loss_batch = None # avg over the sub_heads
avg_loss_no_lamb_batch = None
for i in xrange(config.num_sub_heads):
loss, loss_no_lamb = IID_loss(x_outs[i],
x_tf_outs[i],
lamb=config.lamb)
if avg_loss_batch is None:
avg_loss_batch = loss
avg_loss_no_lamb_batch = loss_no_lamb
else:
def main():
parser = argparse.ArgumentParser()
parser.add_argument("--model_ind", type=int, required=True)
parser.add_argument("--arch", type=str, required=True)
parser.add_argument("--head_lr", type=float, required=True)
parser.add_argument("--trunk_lr", type=float, required=True)
parser.add_argument("--num_epochs", type=int, default=3200)
parser.add_argument("--new_batch_sz", type=int, default=-1)
parser.add_argument("--old_model_ind", type=int, required=True)
parser.add_argument("--penultimate_features",
default=False,
action="store_true")
parser.add_argument("--random_affine", default=False, action="store_true")
parser.add_argument("--affine_p", type=float, default=0.5)
parser.add_argument("--cutout", default=False, action="store_true")
parser.add_argument("--cutout_p", type=float, default=0.5)
parser.add_argument("--cutout_max_box", type=float, default=0.5)
parser.add_argument("--restart", default=False, action="store_true")
parser.add_argument("--lr_schedule", type=int, nargs="+", default=[])
parser.add_argument("--lr_mult", type=float, default=0.5)
parser.add_argument("--restart_new_model_ind",
default=False,
action="store_true")
parser.add_argument("--new_model_ind", type=int, default=0)
parser.add_argument("--out_root",
type=str,
default="/scratch/shared/slow/xuji/iid_private")
config = parser.parse_args() # new config
# Setup ----------------------------------------------------------------------
config.contiguous_sz = 10 # Tencrop
config.out_dir = os.path.join(config.out_root, str(config.model_ind))
if not os.path.exists(config.out_dir):
os.makedirs(config.out_dir)
if config.restart:
given_config = config
reloaded_config_path = os.path.join(given_config.out_dir,
"config.pickle")
print("Loading restarting config from: %s" % reloaded_config_path)
with open(reloaded_config_path, "rb") as config_f:
config = pickle.load(config_f)
assert (config.model_ind == given_config.model_ind)
config.restart = True
config.num_epochs = given_config.num_epochs # train for longer
config.restart_new_model_ind = given_config.restart_new_model_ind
config.new_model_ind = given_config.new_model_ind
start_epoch = config.last_epoch + 1
print("...restarting from epoch %d" % start_epoch)
# in case we overshot without saving
config.epoch_acc = config.epoch_acc[:start_epoch]
config.epoch_loss = config.epoch_loss[:start_epoch]
else:
config.epoch_acc = []
config.epoch_loss = []
start_epoch = 0
# old config only used retrospectively for setting up model at start
reloaded_config_path = os.path.join(
os.path.join(config.out_root, str(config.old_model_ind)),
"config.pickle")
print("Loading old features config from: %s" % reloaded_config_path)
with open(reloaded_config_path, "rb") as config_f:
old_config = pickle.load(config_f)
assert (old_config.model_ind == config.old_model_ind)
if config.new_batch_sz == -1:
config.new_batch_sz = old_config.batch_sz
fig, axarr = plt.subplots(2, sharex=False, figsize=(20, 20))
# Data -----------------------------------------------------------------------
assert (old_config.dataset == "STL10")
# make supervised data: train on train, test on test, unlabelled is unused
tf1, tf2, tf3 = sobel_make_transforms(old_config,
random_affine=config.random_affine,
cutout=config.cutout,
cutout_p=config.cutout_p,
cutout_max_box=config.cutout_max_box,
affine_p=config.affine_p)
dataset_class = torchvision.datasets.STL10
train_data = dataset_class(
root=old_config.dataset_root,
transform=tf2, # also could use tf1
split="train")
train_loader = torch.utils.data.DataLoader(train_data,
batch_size=config.new_batch_sz,
shuffle=True,
num_workers=0,
drop_last=False)
test_data = dataset_class(root=old_config.dataset_root,
transform=None,
split="test")
test_data = TenCropAndFinish(test_data,
input_sz=old_config.input_sz,
include_rgb=old_config.include_rgb)
test_loader = torch.utils.data.DataLoader(
test_data,
batch_size=config.new_batch_sz,
# full batch
shuffle=False,
num_workers=0,
drop_last=False)
# Model ----------------------------------------------------------------------
net_features = archs.__dict__[old_config.arch](old_config)
if not config.restart:
model_path = os.path.join(old_config.out_dir, "best_net.pytorch")
net_features.load_state_dict(
torch.load(model_path, map_location=lambda storage, loc: storage))
dlen = get_dlen(net_features,
train_loader,
include_rgb=old_config.include_rgb,
penultimate_features=config.penultimate_features)
print("dlen: %d" % dlen)
assert (config.arch == "SupHead5")
net = SupHead5(net_features, dlen=dlen, gt_k=old_config.gt_k)
if config.restart:
print("restarting from latest net")
model_path = os.path.join(config.out_dir, "latest_net.pytorch")
net.load_state_dict(
torch.load(model_path, map_location=lambda storage, loc: storage))
net.cuda()
net = torch.nn.DataParallel(net)
opt_trunk = torch.optim.Adam(net.module.trunk.parameters(),
lr=config.trunk_lr)
opt_head = torch.optim.Adam(net.module.head.parameters(),
lr=(config.head_lr))
if config.restart:
print("restarting from latest optimiser")
optimiser_states = torch.load(
os.path.join(config.out_dir, "latest_optimiser.pytorch"))
opt_trunk.load_state_dict(optimiser_states["opt_trunk"])
opt_head.load_state_dict(optimiser_states["opt_head"])
else:
print("using new optimiser state")
criterion = nn.CrossEntropyLoss().cuda()
if not config.restart:
net.eval()
acc = assess_acc_block(
net,
test_loader,
gt_k=old_config.gt_k,
include_rgb=old_config.include_rgb,
penultimate_features=config.penultimate_features,
contiguous_sz=config.contiguous_sz)
print("pre: model %d old model %d, acc %f time %s" %
(config.model_ind, config.old_model_ind, acc, datetime.now()))
sys.stdout.flush()
config.epoch_acc.append(acc)
if config.restart_new_model_ind:
assert (config.restart)
config.model_ind = config.new_model_ind # old_model_ind stays same
config.out_dir = os.path.join(config.out_root, str(config.model_ind))
print("restarting as model %d" % config.model_ind)
if not os.path.exists(config.out_dir):
os.makedirs(config.out_dir)
# Train ----------------------------------------------------------------------
for e_i in xrange(start_epoch, config.num_epochs):
net.train()
if e_i in config.lr_schedule:
print("e_i %d, multiplying lr for opt trunk and head by %f" %
(e_i, config.lr_mult))
opt_trunk = update_lr(opt_trunk, lr_mult=config.lr_mult)
opt_head = update_lr(opt_head, lr_mult=config.lr_mult)
if not hasattr(config, "lr_changes"):
config.lr_changes = []
config.lr_changes.append((e_i, config.lr_mult))
avg_loss = 0.
num_batches = len(train_loader)
for i, (imgs, targets) in enumerate(train_loader):
imgs = sobel_process(imgs.cuda(), old_config.include_rgb)
targets = targets.cuda()
x_out = net(imgs, penultimate_features=config.penultimate_features)
loss = criterion(x_out, targets)
avg_loss += float(loss.data)
opt_trunk.zero_grad()
opt_head.zero_grad()
loss.backward()
opt_trunk.step()
opt_head.step()
if (i % 100 == 0) or (e_i == start_epoch):
print("batch %d of %d, loss %f, time %s" %
(i, num_batches, float(loss.data), datetime.now()))
sys.stdout.flush()
avg_loss /= num_batches
net.eval()
acc = assess_acc_block(
net,
test_loader,
gt_k=old_config.gt_k,
include_rgb=old_config.include_rgb,
penultimate_features=config.penultimate_features,
contiguous_sz=config.contiguous_sz)
print(
"model %d old model %d epoch %d acc %f time %s" %
(config.model_ind, config.old_model_ind, e_i, acc, datetime.now()))
sys.stdout.flush()
is_best = False
if acc > max(config.epoch_acc):
is_best = True
config.epoch_acc.append(acc)
config.epoch_loss.append(avg_loss)
axarr[0].clear()
axarr[0].plot(config.epoch_acc)
axarr[0].set_title("Acc")
axarr[1].clear()
axarr[1].plot(config.epoch_loss)
axarr[1].set_title("Loss")
fig.canvas.draw_idle()
fig.savefig(os.path.join(config.out_dir, "plots.png"))
if is_best or (e_i % 10 == 0):
net.module.cpu()
if is_best:
torch.save(net.module.state_dict(),
os.path.join(config.out_dir, "best_net.pytorch"))
torch.save(
{
"opt_head": opt_head.state_dict(),
"opt_trunk": opt_trunk.state_dict()
}, os.path.join(config.out_dir, "best_optimiser.pytorch"))
# save model sparingly for this script
if e_i % 10 == 0:
torch.save(net.module.state_dict(),
os.path.join(config.out_dir, "latest_net.pytorch"))
torch.save(
{
"opt_head": opt_head.state_dict(),
"opt_trunk": opt_trunk.state_dict()
}, os.path.join(config.out_dir,
"latest_optimiser.pytorch"))
net.module.cuda()
config.last_epoch = e_i # for last saved version
with open(os.path.join(config.out_dir, "config.pickle"),
'w') as outfile:
pickle.dump(config, outfile)
with open(os.path.join(config.out_dir, "config.txt"),
"w") as text_file:
text_file.write("%s" % config)
def train():
print("inside train")
exit()
dataloaders_head_A, mapping_assignment_dataloader, mapping_test_dataloader = \
segmentation_create_dataloaders(config)
dataloaders_head_B = dataloaders_head_A # unlike for clustering datasets
net = archs.__dict__[config.arch](config)
if config.restart:
dict = torch.load(os.path.join(config.out_dir, dict_name),
map_location=lambda storage, loc: storage)
net.load_state_dict(dict["net"])
net.cuda()
net = torch.nn.DataParallel(net)
net.train()
optimiser = get_opt(config.opt)(net.module.parameters(), lr=config.lr)
if config.restart:
optimiser.load_state_dict(dict["optimiser"])
heads = ["A", "B"]
if hasattr(config, "head_B_first") and config.head_B_first:
heads = ["B", "A"]
# Results
# ----------------------------------------------------------------------
if config.restart:
next_epoch = config.last_epoch + 1
print("starting from epoch %d" % next_epoch)
config.epoch_acc = config.epoch_acc[:next_epoch] # in case we overshot
config.epoch_avg_subhead_acc = config.epoch_avg_subhead_acc[:next_epoch]
config.epoch_stats = config.epoch_stats[:next_epoch]
config.epoch_loss_head_A = config.epoch_loss_head_A[:(next_epoch - 1)]
config.epoch_loss_no_lamb_head_A = config.epoch_loss_no_lamb_head_A[
:(next_epoch - 1)]
config.epoch_loss_head_B = config.epoch_loss_head_B[:(next_epoch - 1)]
config.epoch_loss_no_lamb_head_B = config.epoch_loss_no_lamb_head_B[
:(next_epoch - 1)]
else:
config.epoch_acc = []
config.epoch_avg_subhead_acc = []
config.epoch_stats = []
config.epoch_loss_head_A = []
config.epoch_loss_no_lamb_head_A = []
config.epoch_loss_head_B = []
config.epoch_loss_no_lamb_head_B = []
_ = segmentation_eval(config, net,
mapping_assignment_dataloader=mapping_assignment_dataloader,
mapping_test_dataloader=mapping_test_dataloader,
sobel=(not config.no_sobel),
using_IR=config.using_IR)
print(
"Pre: time %s: \n %s" % (datetime.now(), nice(config.epoch_stats[-1])))
sys.stdout.flush()
next_epoch = 1
fig, axarr = plt.subplots(6, sharex=False, figsize=(20, 20))
if not config.use_uncollapsed_loss:
print("using condensed loss (default)")
loss_fn = IID_segmentation_loss
else:
print("using uncollapsed loss!")
loss_fn = IID_segmentation_loss_uncollapsed
# Train
# ------------------------------------------------------------------------
for e_i in xrange(next_epoch, config.num_epochs):
print("Starting e_i: %d %s" % (e_i, datetime.now()))
sys.stdout.flush()
if e_i in config.lr_schedule:
optimiser = update_lr(optimiser, lr_mult=config.lr_mult)
for head_i in range(2):
head = heads[head_i]
if head == "A":
dataloaders = dataloaders_head_A
epoch_loss = config.epoch_loss_head_A
epoch_loss_no_lamb = config.epoch_loss_no_lamb_head_A
lamb = config.lamb_A
elif head == "B":
dataloaders = dataloaders_head_B
epoch_loss = config.epoch_loss_head_B
epoch_loss_no_lamb = config.epoch_loss_no_lamb_head_B
lamb = config.lamb_B
iterators = (d for d in dataloaders)
b_i = 0
avg_loss = 0. # over heads and head_epochs (and sub_heads)
avg_loss_no_lamb = 0.
avg_loss_count = 0
for tup in itertools.izip(*iterators):
net.module.zero_grad()
if not config.no_sobel:
pre_channels = config.in_channels - 1
else:
pre_channels = config.in_channels
all_img1 = torch.zeros(config.batch_sz, pre_channels,
config.input_sz, config.input_sz).to(
torch.float32).cuda()
all_img2 = torch.zeros(config.batch_sz, pre_channels,
config.input_sz, config.input_sz).to(
torch.float32).cuda()
all_affine2_to_1 = torch.zeros(config.batch_sz, 2, 3).to(
torch.float32).cuda()
all_mask_img1 = torch.zeros(config.batch_sz, config.input_sz,
config.input_sz).to(torch.float32).cuda()
curr_batch_sz = tup[0][0].shape[0]
for d_i in xrange(config.num_dataloaders):
img1, img2, affine2_to_1, mask_img1 = tup[d_i]
assert (img1.shape[0] == curr_batch_sz)
actual_batch_start = d_i * curr_batch_sz
actual_batch_end = actual_batch_start + curr_batch_sz
all_img1[actual_batch_start:actual_batch_end, :, :, :] = img1
all_img2[actual_batch_start:actual_batch_end, :, :, :] = img2
all_affine2_to_1[actual_batch_start:actual_batch_end, :,
:] = affine2_to_1
all_mask_img1[actual_batch_start:actual_batch_end, :, :] = mask_img1
if not (curr_batch_sz == config.dataloader_batch_sz) and (
e_i == next_epoch):
print("last batch sz %d" % curr_batch_sz)
curr_total_batch_sz = curr_batch_sz * config.num_dataloaders # times 2
all_img1 = all_img1[:curr_total_batch_sz, :, :, :]
all_img2 = all_img2[:curr_total_batch_sz, :, :, :]
all_affine2_to_1 = all_affine2_to_1[:curr_total_batch_sz, :, :]
all_mask_img1 = all_mask_img1[:curr_total_batch_sz, :, :]
if (not config.no_sobel):
all_img1 = sobel_process(all_img1, config.include_rgb,
using_IR=config.using_IR)
all_img2 = sobel_process(all_img2, config.include_rgb,
using_IR=config.using_IR)
x1_outs = net(all_img1, head=head)
x2_outs = net(all_img2, head=head)
avg_loss_batch = None # avg over the heads
avg_loss_no_lamb_batch = None
for i in xrange(config.num_sub_heads):
loss, loss_no_lamb = loss_fn(x1_outs[i],
x2_outs[i],
all_affine2_to_1=all_affine2_to_1,
all_mask_img1=all_mask_img1,
lamb=lamb,
half_T_side_dense=config.half_T_side_dense,
half_T_side_sparse_min=config.half_T_side_sparse_min,
half_T_side_sparse_max=config.half_T_side_sparse_max)
if avg_loss_batch is None:
avg_loss_batch = loss
avg_loss_no_lamb_batch = loss_no_lamb
else:
avg_loss_batch += loss
avg_loss_no_lamb_batch += loss_no_lamb
avg_loss_batch /= config.num_sub_heads
avg_loss_no_lamb_batch /= config.num_sub_heads
if ((b_i % 100) == 0) or (e_i == next_epoch):
print(
"Model ind %d epoch %d head %s batch: %d avg loss %f avg loss no "
"lamb %f "
"time %s" % \
(config.model_ind, e_i, head, b_i, avg_loss_batch.item(),
avg_loss_no_lamb_batch.item(), datetime.now()))
sys.stdout.flush()
if not np.isfinite(avg_loss_batch.item()):
print("Loss is not finite... %s:" % str(avg_loss_batch))
exit(1)
avg_loss += avg_loss_batch.item()
avg_loss_no_lamb += avg_loss_no_lamb_batch.item()
avg_loss_count += 1
avg_loss_batch.backward()
optimiser.step()
torch.cuda.empty_cache()
b_i += 1
if b_i == 2 and config.test_code:
break
avg_loss = float(avg_loss / avg_loss_count)
avg_loss_no_lamb = float(avg_loss_no_lamb / avg_loss_count)
epoch_loss.append(avg_loss)
epoch_loss_no_lamb.append(avg_loss_no_lamb)
# Eval
# -----------------------------------------------------------------------
is_best = segmentation_eval(config, net,
mapping_assignment_dataloader=mapping_assignment_dataloader,
mapping_test_dataloader=mapping_test_dataloader,
sobel=(
not config.no_sobel),
using_IR=config.using_IR)
print(
"Pre: time %s: \n %s" % (datetime.now(), nice(config.epoch_stats[-1])))
sys.stdout.flush()
axarr[0].clear()
axarr[0].plot(config.epoch_acc)
axarr[0].set_title("acc (best), top: %f" % max(config.epoch_acc))
axarr[1].clear()
axarr[1].plot(config.epoch_avg_subhead_acc)
axarr[1].set_title("acc (avg), top: %f" % max(config.epoch_avg_subhead_acc))
axarr[2].clear()
axarr[2].plot(config.epoch_loss_head_A)
axarr[2].set_title("Loss head A")
axarr[3].clear()
axarr[3].plot(config.epoch_loss_no_lamb_head_A)
axarr[3].set_title("Loss no lamb head A")
axarr[4].clear()
axarr[4].plot(config.epoch_loss_head_B)
axarr[4].set_title("Loss head B")
axarr[5].clear()
axarr[5].plot(config.epoch_loss_no_lamb_head_B)
axarr[5].set_title("Loss no lamb head B")
fig.canvas.draw_idle()
fig.savefig(os.path.join(config.out_dir, "plots.png"))
if is_best or (e_i % config.save_freq == 0):
net.module.cpu()
save_dict = {"net": net.module.state_dict(),
"optimiser": optimiser.state_dict()}
if e_i % config.save_freq == 0:
torch.save(save_dict, os.path.join(config.out_dir, "latest.pytorch"))
config.last_epoch = e_i # for last saved version
if is_best:
torch.save(save_dict, os.path.join(config.out_dir, "best.pytorch"))
with open(os.path.join(config.out_dir, "best_config.pickle"),
'wb') as outfile:
pickle.dump(config, outfile)
with open(os.path.join(config.out_dir, "best_config.txt"),
"w") as text_file:
text_file.write("%s" % config)
net.module.cuda()
with open(os.path.join(config.out_dir, "config.pickle"), 'wb') as outfile:
pickle.dump(config, outfile)
with open(os.path.join(config.out_dir, "config.txt"), "w") as text_file:
text_file.write("%s" % config)
if config.test_code:
exit(0)
if not os.path.exists(render_out_dir):
os.makedirs(render_out_dir)
results_f = os.path.join(render_out_dir, "results.txt")
iterators = (d for d in [dataloader, render_dataloader])
for tup in itertools.izip(*iterators):
train_batch = tup[0]
render_batch = tup[1]
imgs = train_batch[0].cuda()
orig_imgs = render_batch[0]
if sobel:
imgs = sobel_process(imgs, config.include_rgb, using_IR=using_IR)
flat_targets = train_batch[1]
with torch.no_grad():
x_outs = net(imgs)
assert (x_outs[0].shape[1] == config.output_k)
assert (len(x_outs[0].shape) == 2)
x_outs_curr = x_outs[best_head]
flat_preds_curr = torch.argmax(x_outs_curr, dim=1) # along output_k
with open(results_f, "w") as f:
for i, img_i in enumerate(img_inds):
img = orig_imgs[img_i].numpy()
all_img2[actual_batch_start:actual_batch_end, :, :, :] = img2
all_affine2_to_1[actual_batch_start:actual_batch_end, :, :] = affine2_to_1
all_mask_img1[actual_batch_start:actual_batch_end, :, :] = mask_img1
if not (curr_batch_sz == config.dataloader_batch_sz) and (
e_i == next_epoch):
print("last batch sz %d" % curr_batch_sz)
curr_total_batch_sz = curr_batch_sz * config.num_dataloaders
all_img1 = all_img1[:curr_total_batch_sz, :, :, :]
all_img2 = all_img2[:curr_total_batch_sz, :, :, :]
all_affine2_to_1 = all_affine2_to_1[:curr_total_batch_sz, :, :]
all_mask_img1 = all_mask_img1[:curr_total_batch_sz, :, :]
if (not config.no_sobel):
all_img1 = sobel_process(all_img1, config.include_rgb,
using_IR=config.using_IR)
all_img2 = sobel_process(all_img2, config.include_rgb,
using_IR=config.using_IR)
x1_outs = net(all_img1)
x2_outs = net(all_img2)
avg_loss_batch = None # avg over the heads
avg_loss_no_lamb_batch = None
for i in xrange(config.num_sub_heads):
loss, loss_no_lamb = loss_fn(x1_outs[i],
x2_outs[i],
all_affine2_to_1=all_affine2_to_1,
all_mask_img1=all_mask_img1,
lamb=config.lamb,
half_T_side_dense=config.half_T_side_dense,
def _segmentation_get_data(config,
net,
dataloader,
sobel=False,
using_IR=False,
verbose=0):
# returns (vectorised) cuda tensors for flat preds and targets
# sister of _clustering_get_data
assert (config.output_k <= 255)
num_batches = len(dataloader)
num_samples = 0
# upper bound, will be less for last batch
samples_per_batch = config.batch_sz * config.input_sz * config.input_sz
if verbose > 0:
print("started _segmentation_get_data %s" % datetime.now())
sys.stdout.flush()
# vectorised
flat_predss_all = [
torch.zeros((num_batches * samples_per_batch),
dtype=torch.uint8).cuda()
for _ in range(config.num_sub_heads)
]
flat_targets_all = torch.zeros((num_batches * samples_per_batch),
dtype=torch.uint8).cuda()
mask_all = torch.zeros((num_batches * samples_per_batch),
dtype=torch.uint8).cuda()
if verbose > 0:
batch_start = datetime.now()
all_start = batch_start
print("starting batches %s" % batch_start)
for b_i, batch in enumerate(dataloader):
imgs, flat_targets, mask = batch
imgs = imgs.cuda()
if sobel:
imgs = sobel_process(imgs, config.include_rgb, using_IR=using_IR)
with torch.no_grad():
x_outs = net(imgs)
assert (x_outs[0].shape[1] == config.output_k)
assert (x_outs[0].shape[2] == config.input_sz
and x_outs[0].shape[3] == config.input_sz)
# actual batch size
actual_samples_curr = (flat_targets.shape[0] * config.input_sz *
config.input_sz)
num_samples += actual_samples_curr
# vectorise: collapse from 2D to 1D
start_i = b_i * samples_per_batch
for i in range(config.num_sub_heads):
x_outs_curr = x_outs[i]
assert (not x_outs_curr.requires_grad)
flat_preds_curr = torch.argmax(x_outs_curr, dim=1)
flat_predss_all[i][start_i:(
start_i + actual_samples_curr)] = flat_preds_curr.view(-1)
flat_targets_all[start_i:(start_i +
actual_samples_curr)] = flat_targets.view(-1)
mask_all[start_i:(start_i + actual_samples_curr)] = mask.view(-1)
if verbose > 0 and b_i < 3:
batch_finish = datetime.now()
print("finished batch %d, %s, took %s, of %d" %
(b_i, batch_finish, batch_finish - batch_start, num_batches))
batch_start = batch_finish
sys.stdout.flush()
if verbose > 0:
all_finish = datetime.now()
print("finished all batches %s, took %s" %
(all_finish, all_finish - all_start))
sys.stdout.flush()
flat_predss_all = [
flat_predss_all[i][:num_samples] for i in range(config.num_sub_heads)
]
flat_targets_all = flat_targets_all[:num_samples]
mask_all = mask_all[:num_samples]
flat_predss_all = [
flat_predss_all[i].masked_select(mask=mask_all)
for i in range(config.num_sub_heads)
]
flat_targets_all = flat_targets_all.masked_select(mask=mask_all)
if verbose > 0:
print("ended _segmentation_get_data %s" % datetime.now())
sys.stdout.flush()
selected_samples = mask_all.sum()
assert (len(flat_predss_all[0].shape) == 1
and len(flat_targets_all.shape) == 1)
assert (flat_predss_all[0].shape[0] == selected_samples)
assert (flat_targets_all.shape[0] == selected_samples)
return flat_predss_all, flat_targets_all
is_best = False
if e_i in config.lr_schedule:
optimiser = update_lr(optimiser, lr_mult=config.lr_mult)
avg_loss = 0. # over epoch
for b_i, tup in enumerate(dataloader):
net.module.zero_grad()
img, mask = tup # cuda
# no need for requires_grad or Variable (torch 0.4.1)
if (not config.no_sobel):
img = sobel_process(img,
config.include_rgb,
using_IR=config.using_IR)
centre, other, adjacent = isola_set_patches(
input_sz=config.input_sz, patch_side=config.isola_patch_side)
adjacent_pred = net(img, centre=centre, other=other)
loss = isola_loss(adjacent_pred,
centre,
other,
adjacent,
mask,
verbose=config.verbose)
if ((b_i % 100) == 0) or (e_i == next_epoch):
print("Model ind %d epoch %d batch: %d loss %f "
imgs_dataloader = mapping_assignment_dataloader
else:
assert (False)
print("length of imgs_dataloader %d" % len(imgs_dataloader))
next_img_ind = 0
for b_i, batch in enumerate(imgs_dataloader):
orig_imgs, flat_targets, mask = batch
orig_imgs, flat_targets, mask = \
orig_imgs.cuda(), flat_targets.numpy(), mask.numpy().astype(np.bool)
if not config.no_sobel:
imgs = sobel_process(orig_imgs,
config.include_rgb,
using_IR=config.using_IR)
else:
imgs = orig_imgs
with torch.no_grad():
x_outs_all = net(imgs)
x_outs = x_outs_all[head_i]
x_outs = x_outs.cpu().numpy()
flat_preds = np.argmax(x_outs, axis=1)
n, h, w = flat_preds.shape
num_imgs_curr = flat_preds.shape[0]
reordered_preds = np.zeros((num_imgs_curr, h, w),
def train_kmeans(config, net, test_dataloader):
num_imgs = len(test_dataloader.dataset)
max_num_pixels_per_img = int(config.max_num_kmeans_samples / num_imgs)
features_all = np.zeros(
(config.max_num_kmeans_samples, net.module.features_sz),
dtype=np.float32)
actual_num_features = 0
# discard the label information in the dataloader
for i, tup in enumerate(test_dataloader):
if (config.verbose and i < 10) or (i % int(len(test_dataloader) / 10)
== 0):
print("(kmeans_segmentation_eval) batch %d time %s" %
(i, datetime.now()))
sysout.flush()
imgs, _, mask = tup # test dataloader, cpu tensors
imgs = imgs.cuda()
mask = mask.numpy().astype(np.bool)
# mask = mask.numpy().astype(np.bool)
num_unmasked = mask.sum()
if not config.no_sobel:
imgs = sobel_process(imgs,
config.include_rgb,
using_IR=config.using_IR)
# now rgb(ir) and/or sobel
with torch.no_grad():
# penultimate = features
x_out = net(imgs, penultimate=True).cpu().numpy()
if config.verbose and i < 2:
print("(kmeans_segmentation_eval) through model %d time %s" %
(i, datetime.now()))
sysout.flush()
num_imgs_batch = x_out.shape[0]
x_out = x_out.transpose((0, 2, 3, 1)) # features last
x_out = x_out[mask, :]
if config.verbose and i < 2:
print("(kmeans_segmentation_eval) applied mask %d time %s" %
(i, datetime.now()))
sysout.flush()
if i == 0:
assert (x_out.shape[1] == net.module.features_sz)
assert (x_out.shape[0] == num_unmasked)
# select pixels randomly, and record how many selected
num_selected = min(num_unmasked,
num_imgs_batch * max_num_pixels_per_img)
selected = np.random.choice(num_selected, replace=False)
x_out = x_out[selected, :]
if config.verbose and i < 2:
print("(kmeans_segmentation_eval) applied select %d time %s" %
(i, datetime.now()))
sysout.flush()
features_all[actual_num_features:actual_num_features + num_selected, :] = \
x_out
actual_num_features += num_selected
if config.verbose and i < 2:
print("(kmeans_segmentation_eval) stored %d time %s" %
(i, datetime.now()))
sysout.flush()
assert (actual_num_features <= config.max_num_kmeans_samples)
features_all = features_all[:actual_num_features, :]
if config.verbose:
print("running kmeans")
sysout.flush()
kmeans = MiniBatchKMeans(n_clusters=config.gt_k,
verbose=config.verbose).fit(features_all)
return kmeans
def apply_trained_kmeans(config, net, test_dataloader, kmeans):
if config.verbose:
print("starting inference")
sysout.flush()
# on the entire test dataset
num_imgs = len(test_dataloader.dataset)
max_num_samples = num_imgs * config.input_sz * config.input_sz
preds_all = torch.zeros(max_num_samples, dtype=torch.int32).cuda()
targets_all = torch.zeros(max_num_samples, dtype=torch.int32).cuda()
actual_num_unmasked = 0
# discard the label information in the dataloader
for i, tup in enumerate(test_dataloader):
if (config.verbose and i < 10) or (i % int(len(test_dataloader) / 10)
== 0):
print("(apply_trained_kmeans) batch %d time %s" %
(i, datetime.now()))
sysout.flush()
imgs, targets, mask = tup # test dataloader, cpu tensors
imgs, mask_cuda, targets, mask_np = imgs.cuda(), mask.cuda(), \
targets.cuda(), mask.numpy().astype(
np.bool)
num_unmasked = mask_cuda.sum().item()
if not config.no_sobel:
imgs = sobel_process(imgs,
config.include_rgb,
using_IR=config.using_IR)
# now rgb(ir) and/or sobel
with torch.no_grad():
# penultimate = features
x_out = net(imgs, penultimate=True).cpu().numpy()
x_out = x_out.transpose((0, 2, 3, 1)) # features last
x_out = x_out[mask_np, :]
targets = targets.masked_select(mask_cuda) # can do because flat
assert (x_out.shape == (num_unmasked, net.module.features_sz))
preds = torch.from_numpy(kmeans.predict(x_out)).cuda()
preds_all[actual_num_unmasked:actual_num_unmasked +
num_unmasked] = preds
targets_all[actual_num_unmasked:actual_num_unmasked +
num_unmasked] = targets
actual_num_unmasked += num_unmasked
preds_all = preds_all[:actual_num_unmasked]
targets_all = targets_all[:actual_num_unmasked]
torch.cuda.empty_cache()
# permutation, not many-to-one
match = _hungarian_match(preds_all,
targets_all,
preds_k=config.gt_k,
targets_k=config.gt_k)
torch.cuda.empty_cache()
# do in cpu because of RAM
reordered_preds = torch.zeros(actual_num_unmasked, dtype=preds_all.dtype)
for pred_i, target_i in match:
selected = (preds_all == pred_i).cpu()
reordered_preds[selected] = target_i
reordered_preds = reordered_preds.cuda()
# this checks values
acc = _acc(reordered_preds,
targets_all,
config.gt_k,
verbose=config.verbose)
if GET_NMI_ARI:
nmi, ari = _nmi(reordered_preds, targets_all), \
_ari(reordered_preds, targets_all)
else:
nmi, ari = -1., -1.
reordered_masses = np.zeros(config.gt_k)
for c in xrange(config.gt_k):
reordered_masses[c] = float(
(reordered_preds == c).sum()) / actual_num_unmasked
return acc, nmi, ari, reordered_masses
