def main(argv, pkg):
"""
Main function.
"""
# Use alternate compute (back-end) package if defined
batch = cs_batch.batch(pkg)
submit_cmd = batch.submit_command_prefix()
if not submit_cmd:
submit_cmd = get_shell_type()
epilog = ("Options not listed above are passed to the batch "
"submission commands; see your batch documentation for this.")
run_parser = cs_run.arg_parser(argv, pkg)
parser = ArgumentParser(
parents=[run_parser],
description="Submit a case or specified run stages.",
usage='%(prog)s [run options] [batch options]',
epilog=epilog,
conflict_handler='resolve')
run_args, submit_args = parser.parse_known_args(argv)
retcode, result_path, r_c = cs_run.run(pkg=pkg,
run_args=run_args,
submit_args=submit_args)
# Now prepare runcase for submission
if retcode != 0 or not result_path:
err_str = ' run not staged due to prior error.'
raise Exception(err_str)
runcase_path = os.path.join(result_path, 'runcase')
runcase = cs_runcase.runcase(runcase_path,
package=pkg,
submit=True,
job_header=r_c['job_header'],
prologue=r_c['run_prologue'],
epilogue=r_c['run_epilogue'])
runcase.save()
# Now submit case
save_wd = os.getcwd()
os.chdir(result_path)
if r_c['job_parameters']:
submit_cmd += ' ' + r_c['job_parameters']
submit_cmd += ' ./runcase'
return subprocess.call(submit_cmd, shell=True)
os.chdir(save_wd)
def __init__(self, path=None, pkg=None, import_legacy=False):
"""
Constructor.
"""
self.pkg = pkg
if self.pkg == None:
from code_saturne.cs_package import package
pkg = package()
self.run_conf = None
self.path = path
# Configuration-based information
i_c = cs_run_conf.get_install_config_info(self.pkg)
self.resource_name = cs_run_conf.get_resource_name(i_c)
self.compute_builds = i_c['compute_builds']
self.batch = cs_batch.batch(self.pkg)
# Convert from legacy runcase if not updated yet
# (delaying application of file changes to save).
# in this case, the run_conf object is pre-loaded so that
# the "save" operation can apply the (conversion) changes
# even when the configuration file has not been loaded.
self.runcase_path = None
if self.path:
if import_legacy and not os.path.isfile(self.path):
dirname = os.path.dirname(self.path)
if os.path.basename(dirname) == 'DATA':
dirname = os.path.join(os.path.basename(dirname), 'SCRIPTS')
runcase_path = os.path.join(dirname, 'runcase')
if os.path.isfile(runcase_path):
self.runcase_path = runcase_path
if self.runcase_path:
from code_saturne import cs_runcase
runcase = cs_runcase.runcase(runcase_path,
package=self.pkg)
sections = runcase.run_conf_sections(resource_name=self.resource_name,
batch_template=i_c['batch'])
self.run_conf = cs_run_conf.run_conf(self.path,
package=self.pkg,
create_if_missing=True)
for sn in sections:
if not sn in self.run_conf.sections:
run_conf.sections[sn] = {}
for kw in sections[sn]:
self.run_conf.sections[sn][kw] = sections[sn][kw]
def main(argv, pkg):
"""
Main function.
"""
# Use alternate compute (back-end) package if defined
batch = cs_batch.batch(pkg)
submit_cmd = batch.submit_command_prefix
if not submit_cmd:
submit_cmd = get_shell_type()
submit_args = []
for a in argv:
submit_args.append(a)
retcode, result_path, r_c = cs_run.run(pkg=pkg, submit_args=submit_args)
# Now prepare runcase for submission
if retcode != 0 or not result_path:
err_str = ' run not staged due to prior error.'
raise Exception(err_str)
runcase_path = os.path.join(result_path, 'runcase')
runcase = cs_runcase.runcase(runcase_path,
package=pkg,
submit=True,
job_header = r_c['job_header'],
prologue = r_c['run_prologue'],
epilogue = r_c['run_epilogue'])
runcase.save()
# Now submit case
save_wd = os.getcwd()
os.chdir(result_path)
if r_c['job_parameters']:
submit_cmd += ' ' + r_c['job_parameters']
submit_cmd += ' ./runcase'
return subprocess.call(submit_cmd, shell=True)
os.chdir(save_wd)
def main(argv, pkg):
"""
Main function.
"""
# Use alternate compute (back-end) package if defined
batch = cs_batch.batch(pkg)
submit_cmd = batch.submit_command_prefix()
if not submit_cmd:
submit_cmd = get_shell_type()
runcase_path = process_cmd_line(argv, submit_cmd, pkg)
if not runcase_path:
return 1
scripts_dir = os.path.abspath(os.path.dirname(runcase_path))
runcase = cs_runcase.runcase(runcase_path)
# Adjust run command for staging only
run_args = runcase.get_run_args()
for a in ['--stage', '--initialize', '--execute', '--finalize']:
while a in run_args:
run_args.remove(a)
run_args.append('--stage')
retcode, run_id, result_path = cs_run.run(run_args, pkg)
# Now prepare runcase for submission
if retcode != 0 or not result_path:
err_str = ' run not staged due to prior error.'
raise Exception(err_str)
run_args = runcase.get_run_args()
while '--stage' in run_args:
run_args.remove(a)
stages = []
for a in ['--initialize', '--execute', '--finalize']:
if a in run_args:
stages.append(a)
if not stages:
run_args.append('--initialize')
run_args.append('--finalize')
runcase.set_run_args(run_args)
runcase.set_run_id(run_id=run_id)
runcase_path = os.path.join(result_path, os.path.basename(runcase_path))
runcase.save(runcase_path)
# Now submit case
save_wd = os.getcwd()
os.chdir(result_path)
for a in argv:
if os.path.isfile(a) and runcase_path:
submit_cmd += ' ' + enquote_arg(runcase_path)
runcase_path = None
else:
submit_cmd += ' ' + enquote_arg(a)
return subprocess.call(submit_cmd, shell=True)
os.chdir(save_wd)
def run_conf_sections(self,
resource_name='job_defaults',
batch_template=None):
"""
Build "run_conf" sections from an existing runcase.
"""
sections = {}
param = self.get_parameters()
setup_dict = {}
if param != 'setup.xml':
setup_dict['param'] = param
if len(setup_dict) > 0:
sections['setup'] = setup_dict
run_dict = {}
compute_build = self.get_compute_build()
if compute_build:
run_dict['compute_build'] = compute_build
run_id, run_id_prefix, run_id_suffix = self.get_run_id()
if run_id:
run_dict['id'] = run_id
if run_id_prefix:
run_dict['id_prefix'] = run_id_prefix
if run_id_suffix:
run_dict['id_suffix'] = run_id_suffix
stage_map = {
'stage': 'stage',
'initialize': 'preprocess',
'execute': 'compute',
'finalize': 'finalize'
}
for stage in stage_map.keys():
if self.get_run_stage(stage):
run_dict[stage_map[stage]] = True
if len(run_dict) > 0:
sections['run'] = run_dict
resource_dict = {}
nprocs = self.get_nprocs()
if nprocs:
resource_dict['n_procs'] = nprocs
nthreads = self.get_nthreads()
if nthreads:
resource_dict['n_threads'] = nthreads
# Handle batch info
if batch_template:
from code_saturne import cs_batch
batch_src = cs_batch.batch(self.package)
batch_src.parse_lines(self.lines)
topdir, scriptdir = os.path.split(os.path.split(self.path)[0])
if scriptdir == 'SCRIPTS':
studydir, casedir = os.path.split(topdir)
studydir = os.path.split(studydir)[1]
else:
casedir = ''
studydir = scriptdir
job_name = studydir.lower() + casedir.lower()
dst_header = cs_batch.generate_header(
batch_template=batch_template,
job_name=job_name,
package=self.package)
batch_dst = cs_batch.batch(self.package)
batch_dst.parse_lines(dst_header)
for k in batch_src.params.keys():
if batch_src.params[k] != None:
batch_dst.params[k] = batch_src.params[k]
batch_dst.update_lines(dst_header)
br = os.linesep
job_header = ''
for i, l in enumerate(dst_header):
if i == 0:
job_header = l
else:
job_header += br + l
resource_dict['job_header'] = job_header
if len(resource_dict) > 0:
sections[resource_name] = resource_dict
return sections