class Measurement(db.Model):
__tablename__ = 'measurement'
measurement_id = db.Column(db.Integer, primary_key=True)
measurement_type = db.Column(db.Enum(NatureOfDataSource), nullable=False)
measurement_instruments = db.Column(db.String(100))
measu_parent_id = db.Column(db.Integer,
db.ForeignKey('experiment_design.design_id'),
nullable=False)
class Task(db.Model):
__tablename__ = 'task'
task_id = db.Column(db.Integer, primary_key=True)
task_parent_id = db.Column(db.Integer,
db.ForeignKey('experiment_design.design_id'),
nullable=False)
task_type = db.Column(db.Enum(TaskType), nullable=False)
quantity = db.Column(db.Integer, nullable=True)
class SamplingCharacteristic(db.Model):
__tablename__ = 'sampling_charac'
charac_id = db.Column(db.Integer, primary_key=True)
parent_charac_id = db.Column(db.Integer,
db.ForeignKey('sampling.sample_id'),
nullable=False)
charac = db.Column(db.String(20), nullable=False)
info = db.Column(db.String(100), nullable=True)
class SamplingProfile(db.Model):
__tablename__ = 'sampling_profile'
sample_profile_id = db.Column(db.Integer, primary_key=True)
parent_profile_id = db.Column(db.Integer,
db.ForeignKey('sampling.sample_id'),
nullable=False)
profile = db.Column(db.Enum(ProfileType), nullable=False)
quantity = db.Column(db.Integer, nullable=False)
class Recruting(db.Model):
__tablename__ = 'recruting'
recruting_id = db.Column(db.Integer, primary_key=True)
recruiting_strategy = db.Column(db.Enum(RecrutingType), nullable=False)
parent_recru_id = db.Column(db.Integer,
db.ForeignKey('sampling.sample_id'),
nullable=False)
parent = db.relationship("Sampling",
back_populates="recruiting_strategies")
class Experiment(db.Model):
__tablename__ = 'experiment'
exp_id = db.Column(db.Integer, primary_key=True)
lab_settings = db.Column(db.Integer)
exp_pub_id = db.Column(db.Integer,
db.ForeignKey('publication.pub_id'),
nullable=False)
samples = db.relationship("Sampling", backref="exp", lazy=True)
design = db.relationship("ExperimentDesign",
uselist=False,
back_populates="experiment")
class ExperimentDesign(db.Model):
__tablename__ = 'experiment_design'
design_id = db.Column(db.Integer, primary_key=True)
experiment_id = db.Column(db.Integer,
db.ForeignKey('experiment.exp_id'),
nullable=False)
experiment = db.relationship("Experiment", back_populates="design")
factor_quantity = db.Column(db.Integer, nullable=False)
# design = db.Column(db.Enum(DesignType), nullable=False)
design = db.Column(db.String(100), nullable=False)
is_explicity_design = db.Column(db.Integer, nullable=False)
tasks = db.relationship('Task', backref="task_parent", lazy=True)
duration = db.relationship("Duration", backref="dura_parent", lazy=True)
measurements = db.relationship('Measurement',
backref='measu_parent',
lazy=True)
class Guideline(db.Model):
__tablename__ = 'guideline'
guide_id = db.Column(db.Integer, primary_key=True)
title = db.Column(db.String(200), nullable=False)
year = db.Column(db.Integer, nullable=False)
authors = db.Column(db.String(200), nullable=False)
address = db.Column(db.String(200), nullable=False)
referenced_by = db.relationship('Publication',
secondary=association_guideline,
backref=db.backref('guidelines',
lazy='dynamic'))
# referenced_by_id = db.Column(db.Integer, db.ForeignKey(
# 'publication.pub_id'), nullable=False)
def __repr__(self):
return f"Guideline('{self.title}', '{self.year}')"
class Sampling(db.Model):
__tablename__ = 'sampling'
sample_id = db.Column(db.Integer, primary_key=True)
exp_id = db.Column(db.Integer,
db.ForeignKey('experiment.exp_id'),
nullable=False)
power_analysis = db.Column(db.Integer, default=0)
sample_total = db.Column(db.Integer, nullable=False)
profiles = db.relationship("SamplingProfile",
backref="parent_profile",
lazy=True)
characteristics = db.relationship("SamplingCharacteristic",
backref="parent_charac",
lazy=True)
recruiting_strategies = db.relationship("Recruting",
uselist=False,
backref="parent_recru",
lazy=True)
def __repr__(self):
return f"Sampling('{self.recruitment_type}', '{self.sample_size}')"
def sample_classification(self):
has_student = False
has_professional = False
total = 0
classification = 0
for a_profile in self.profiles:
if (a_profile.profile == ProfileType.PROFESSIONAL):
has_professional = True
else:
has_student = True
total += a_profile.quantity
if (has_student and has_professional):
return 'mix', total
elif (has_professional):
return 'professional_only', total
else:
return 'student_only', total
class Duration(db.Model):
__tablename__ = 'durantion'
durantion_id = db.Column(db.Integer, primary_key=True)
dura_parent_id = db.Column(db.Integer,
db.ForeignKey('experiment_design.design_id'),
nullable=False)
# If it is short: this amount is in minutes
# If it is long: this amount is in months
durantion_type = db.Column(db.Enum(DurationType))
amount = db.Column(db.FLOAT)
def set_amount(self, data, metric):
self.amount = data
if metric == 'min' or metric == 'mins':
self.amount = data / 60
if metric == 'weeks' or metric == 'week':
self.amount = data / 4
def classification(self):
if self.durantion_type == DurationType.SHORT:
if self.amount < 1:
return '>1h'
elif self.amount < 2:
return '1h-2h'
elif self.amount < 3:
return '2h-3h'
elif self.amount < 4:
return '3h-4h'
else:
return '>4h'
else:
if self.amount < 1:
return 'less than a mounth'
elif self.amount <= 2:
return 'one to two mounths'
else:
return 'three or more mounths'
class Publication(db.Model):
__tablename__ = 'publication'
pub_id = db.Column(db.Integer, primary_key=True)
title = db.Column(db.String(200), nullable=False)
year = db.Column(db.Integer, nullable=False)
venue = db.Column(db.String(200), nullable=False)
authors = db.Column(db.String(200), nullable=False)
institution = db.Column(db.String(200), nullable=False)
keywords = db.Column(db.String(200))
experiments = db.relationship("Experiment", backref="exp_pub", lazy=True)
# guidelines = db.relationship(
# "Guideline", backref="referenced_by", lazy=True)
def __repr__(self):
return f"Publication('{self.title}', '{self.year}')"
from enum import Enum
from datetime import datetime
from itsdangerous import TimedJSONWebSignatureSerializer as Serializer
from coding_tool import db
association_guideline = db.Table(
'association_guideline',
db.metadata,
db.Column('pub_id', db.Integer, db.ForeignKey('publication.pub_id')),
db.Column('guide_id', db.Integer, db.ForeignKey('guideline.guide_id')),
)
class Publication(db.Model):
__tablename__ = 'publication'
pub_id = db.Column(db.Integer, primary_key=True)
title = db.Column(db.String(200), nullable=False)
year = db.Column(db.Integer, nullable=False)
venue = db.Column(db.String(200), nullable=False)
authors = db.Column(db.String(200), nullable=False)
institution = db.Column(db.String(200), nullable=False)
keywords = db.Column(db.String(200))
experiments = db.relationship("Experiment", backref="exp_pub", lazy=True)
# guidelines = db.relationship(
# "Guideline", backref="referenced_by", lazy=True)
def __repr__(self):
return f"Publication('{self.title}', '{self.year}')"