def test_align(self):
"""test aligning samples"""
c = Dialign(WorkingDir=self.temp_dir,
params={"-fn": path.join(self.temp_dir, "seq1.txt")})
c.Parameters["-fa"].on()
res = c(path.join(self.temp_dir, 'seq1.txt'))
align = "".join(res["Align"].readlines())
def test_base_command(self):
"""Dialign BaseCommand should return the correct BaseCommand"""
c = Dialign()
self.assertEqual(c.BaseCommand,
''.join(['cd ',
'"%s/"; ' % getcwd(), 'dialign2-2']))
c.Parameters["-fa"].on()
self.assertEqual(c.BaseCommand,\
''.join(['cd ','"%s/"; ' % getcwd(),'dialign2-2 -fa']))