def test_get_result_path(self):
"""Tests fasta2col result path"""
c = fasta2col(InputHandler='_input_as_lines')
res = c(self.input)
self.assertEqualItems(res.keys(),['StdOut','StdErr','ExitStatus'])
self.assertEqual(res['ExitStatus'],0)
res.cleanUp()
def test_stdout_input_as_lines(self):
"""Test fasta2col stdout input as lines"""
c = fasta2col(InputHandler='_input_as_lines')
res = c(self.input)
self.assertEqual(res['ExitStatus'],0)
assert res['StdOut'] is not None
res.cleanUp()
def test_get_result_path(self):
"""Tests fasta2col result path"""
c = fasta2col(InputHandler='_input_as_lines')
res = c(self.input)
self.assertEqualItems(res.keys(),['StdOut','StdErr','ExitStatus'])
self.assertEqual(res['ExitStatus'],0)
res.cleanUp()
def test_stdout_input_as_lines(self):
"""Test fasta2col stdout input as lines"""
c = fasta2col(InputHandler='_input_as_lines')
res = c(self.input)
self.assertEqual(res['ExitStatus'],0)
assert res['StdOut'] is not None
res.cleanUp()
def test_stdout_input_as_string(self):
"""Test fasta2col stdout input as string"""
c = fasta2col()
f = open('/tmp/single.col','w')
txt = '\n'.join([str(i).strip('\n') for i in self.input])
f.write(txt)
f.close()
res = c('/tmp/single.col')
self.assertEqual(res['ExitStatus'],0)
assert res['StdOut'] is not None
res.cleanUp()
remove('/tmp/single.col')
def test_stdout_input_as_string(self):
"""Test fasta2col stdout input as string"""
c = fasta2col()
f = open('/tmp/single.col','w')
txt = '\n'.join([str(i).strip('\n') for i in self.input])
f.write(txt)
f.close()
res = c('/tmp/single.col')
self.assertEqual(res['ExitStatus'],0)
assert res['StdOut'] is not None
res.cleanUp()
remove('/tmp/single.col')
