def test_cc_bad_pred(self):
"""correlation_coefficient: should give 0 when TP=0"""
ref = Pairs([(1, 7), (2, 5)])
pred = Pairs([(0, 8)])
seqs = ['CAUCGAUUG']
self.assertEqual(correlation_coefficient(ref, pred, seqs=seqs), 0.0)
def test_cc_bad_pred(self):
"""correlation_coefficient: should give 0 when TP=0"""
ref = Pairs([(1,7),(2,5)])
pred = Pairs([(0,8)])
seqs = ['CAUCGAUUG']
self.assertEqual(correlation_coefficient(ref, pred, seqs=seqs), 0.0)
def test_correlation_coefficient(self):
"""correlation_coefficient: check against compare_ct.pm"""
self.assertFloatEqual(correlation_coefficient(self.true,\
self.predicted, seqs=self.seq, min_dist=4), 0.42906394)
def test_correlation_coefficient(self):
"""correlation_coefficient: check against compare_ct.pm"""
self.assertFloatEqual(correlation_coefficient(self.true,\
self.predicted, seqs=self.seq, min_dist=4), 0.42906394)