def test_MinimalGreengenesParser_mock(self):
"""Test MinimalGreengenesParser against mock data"""
res = MinimalGreengenesParser(
mock_data.splitlines(), RecStart="my_starting", RecEnd="my_ending"
)
records = list(res)
exp = [
{"a": "1", "b": "2", "c": "3", "d": "", "e": "5"},
{"q": "asdasd", "c": "taco"},
]
self.assertEqual(records, exp)
def test_MinimalGreengenesParser_real(self):
"""Test MinimalGreengenesParser against real data"""
res = MinimalGreengenesParser(real_data.splitlines())
record1, record2 = list(res)
self.assertEqual(record1["G2_chip_tax_string"], "Unclassified")
self.assertEqual(
record1["authors"],
"Hernanandez-Eugenio,G., Silva-Rojas,H.V., Zelaya-Molina,L.X.",
)
self.assertEqual(record1["bel3_div_ratio"], "")
self.assertEqual(len(record1), 72)
self.assertEqual(record2["ncbi_acc_w_ver"], "FJ832719.1")
self.assertEqual(record2["timestamp"], "2010-03-23 14:08:27")
self.assertEqual(
record2["title"],
"Developmental Microbial Ecology of the Crop of the Folivorous Hoatzin",
)