#//////////////////////////// # Get the planes. #//////////////////////////// planes = ui.getmimsTomography().getPlanes() #//////////////////////////// # Get the rois. #//////////////////////////// rois = ui.getRoiManager().getAllROIs() #//////////////////////////// # Get images. #//////////////////////////// imageArray = ArrayList() massimages = ui.getOpenMassImages() for j in range(len(massimages)): imageArray.add(massimages[j]) # Ratio images # 0 corresponds to the first mass image (e.g. mass 12.0) # 1 corresponds to the second mass image (e.g. mass 13.0) ratioProps1 = RatioProps(1, 0) mp1 = MimsPlus(ui, ratioProps1) imageArray.add(mp1) IJ.log("Opening ratio: " + mp1.getTitle()) # Ratio images # 2 corresponds to the first mass image (e.g. mass 26.0) # 3 corresponds to the second mass image (e.g. mass 27.0) ratioProps2 = RatioProps(3, 2)
#//////////////////////////// # Get the planes. #//////////////////////////// planes = ui.getmimsTomography().getPlanes() #//////////////////////////// # Get the rois. #//////////////////////////// rois = ui.getRoiManager().getAllROIs() #//////////////////////////// # Get images. #//////////////////////////// imageArray = ArrayList() massimages = ui.getOpenMassImages() for j in range(len(massimages)): imageArray.add(massimages[j]) # Ratio images # 0 corresponds to the first mass image (e.g. mass 12.0) # 1 corresponds to the second mass image (e.g. mass 13.0) ratioProps1 = RatioProps(1, 0) mp1 = MimsPlus(ui, ratioProps1) imageArray.add(mp1) IJ.log("Opening ratio: "+mp1.getTitle()) # Ratio images # 2 corresponds to the first mass image (e.g. mass 26.0) # 3 corresponds to the second mass image (e.g. mass 27.0)