def test_motl_csv_not_in_path(self):
sys.argv = [
"something", "-motl", "emd_3465.map", "blabla.csv",
"--tomogram-map-file", "emd_3464.map"
]
with self.assertRaises(ValueError):
cm.main()
def test_map_not_in_path(self):
sys.argv = [
"something", "-dynamo", "emd_1305_averaged.em",
"emd_1305_averaged.tbl", "--tomogram-map-file", "blabla.map"
]
with self.assertRaises(ValueError):
cm.main()
def test_tbl_not_in_path(self):
"""Test whether the system raises ValueError if the given .tbl file does not exist in the path"""
sys.argv = [
"something", "-dynamo", "emd_1305_averaged.em", "blabla.tbl",
"--tomogram-map-file", "emd_1305.map"
]
with self.assertRaises(ValueError):
cm.main()
def test_calls_create_output_function(self):
"""Test if main() is executed, create_output() is run"""
sys.argv = [
"something", "-dynamo", "emd_1305_averaged.em",
"emd_1305_averaged.tbl", "--tomogram-map-file", "emd_1305.map",
"-o", "rm_5.txt"
]
cm.main()
self.assertTrue(os.path.exists("rm_5.txt"))
os.remove("rm_5.txt")
def test_which_create_output(self):
"""Test if the correct function is called"""
captured_output = io.StringIO()
sys.stdout = captured_output
sys.argv = [
"something", "-dynamo", "emd_1305_averaged.em",
"emd_1305_averaged.tbl", "--tomogram-map-file", "emd_1305.map",
"--output", "rm_4.txt"
]
cm.main()
os.path.exists("rm_4.txt")
os.remove("rm_4.txt")
self.assertTrue(
"Source file from Dynamo" in captured_output.getvalue())
sys.argv = [
"something", "-motl", "emd_3465.map", "tests/motl_1_1t.csv",
"--tomogram-map-file", "emd_3464.map", "--output", "rm_4.txt"
]
cm.main()
os.remove("rm_4.txt")
self.assertTrue(
"Source file from Brigg's lab" in captured_output.getvalue())