def make(self, triples_filename, links_filename, verbose=False):
#if not triples_filename.startswith('/'):
# triples_filename = os.path.dirname(os.path.realpath(__file__)) + '/' + triples_filename
#if not links_filename == None and not links_filename.startswith('/'):
# links_filename = os.path.dirname(os.path.realpath(__file__)) + '/' + links_filename
print('Processing triples from {}'.format(triples_filename))
self.__prefixed = {
'http://www.w3.org/2000/01/rdf-schema#': 'rdfs',
'http://local/local.owl#': 'local',
'http://local/verbnet_roles.owl#': 'vn.role'
}
if not links_filename == None:
with open(links_filename, 'r') as links_file:
for line in links_file.readlines():
if len(line) < 2: continue
if line.startswith('@PREFIX'):
line_list = line.split()
prefix = line_list[1]
prefix = prefix[:prefix.rfind(':')]
uri = line_list[2]
uri = uri[uri.find('<') + 1:uri.find('>')]
self.__prefixed.update({uri: prefix})
elif line.startswith('@LINK'):
line_list = line.split('\t')
predicate = line_list[1]
links = '\t'.join(line_list[2:])
self.__links.update({predicate: links})
links_file.close()
with open(triples_filename, 'r') as triples_file:
for line in triples_file.readlines():
line_lst = line.replace('\"', '').split('\t')
sentence_number = line_lst[0].strip()
subject = line_lst[1].strip()
predicate = line_lst[2].strip()
object = line_lst[3].strip()
if not predicate in self.__links and predicate.find(':') < 0:
if verbose:
print(
'Warning: no match for predicate "{}" was found in the links! Skipping triple ...'
.format(predicate))
# continue
predicate_link = ''
#if predicate.find(':') < 0: #Predicates that are already resources/links
if predicate in self.__links:
predicate_link = self.__links[predicate]
entities = set([str(X) for X in self.__links.keys()])
closest_subjects = difflib.get_close_matches(subject,
entities,
n=3,
cutoff=1.0)
closest_objects = difflib.get_close_matches(object,
entities,
n=3,
cutoff=1.0)
if len(closest_subjects) < 1:
if verbose:
print(
'Warning: no match for subject "{}" was found in the links! Attempting partials ...'
.format(subject))
#subj = subject
# Reverse sorted list of entities by string length
#lst_entities = sorted(list(entities), key=len, reverse=True)
#for elem in lst_entities:
# if elem in subj:
# if verbose:
# print('-- Found: {}'.format(elem))
# closest_subjects.append(elem)
# subj = subj.replace(elem, '')
#if len(closest_subjects) < 1:
# if verbose:
# print('WARNING: not even partial matches were found for subject "{}" in the links!'.format(subject))
# continue
if len(closest_objects) < 1:
if verbose:
print(
'Warning: no match for object "{}" was found in the links! Atempting partials ...'
.format(object))
obj = object
# Reverse sorted list of entities by string length
#lst_entities = sorted(list(entities), key=len, reverse=True)
#for elem in lst_entities:
# if elem in obj:
# if verbose:
# print('-- Found: {}'.format(elem))
# closest_objects.append(elem)
# obj = obj.replace(elem, '')
#if len(closest_objects) < 1:
# if verbose:
# print('WARNING: not even partial matches were found for object "{}" in the links!'.format(object))
# continue
# Check for exact matches and discard the others if that's the case
#for sub in closest_subjects:
# if subject == sub:
# closest_subjects = [sub]
# break
#for ob in closest_objects:
# if object == ob:
# closest_objects = [ob]
# break
subject_links = []
for subj in closest_subjects:
subject_links += [self.__links[subj]]
object_links = []
for obj in closest_objects:
object_links += [self.__links[obj]]
triple = Triple(sentence_number, subject, predicate, object,
subject_links, predicate_link, object_links)
prefixes, classes, properties, mapped, relation = triple.to_turtle(
)
self.__prefixed.update(prefixes)
self.__classes.update(classes)
self.__mapped_relations.update(mapped)
self.__properties.update(properties)
self.__relations.add(relation)
triples_file.close()
output_filename = os.path.splitext(triples_filename)[0]
output_filename = output_filename[:output_filename.rfind('_'
)] + '_kg.ttl'
open(output_filename, 'w').close() # Clean the file in case it exists
with open(output_filename, 'a') as output_file:
for key in self.__prefixed.keys():
output_file.write('@prefix\t{}:\t<{}>\t.\n'.format(
self.__prefixed[key], key))
output_file.write('\n#### Classes ####\n\n')
for key in self.__classes.keys():
output_file.write('{}\n\n'.format(self.__classes[key]))
output_file.write('#### Properties ####\n\n')
for key in self.__properties.keys():
output_file.write('{}\n\n'.format(self.__properties[key]))
output_file.write('#### Mapped Relations ####\n\n')
for mapping in self.__mapped_relations:
output_file.write('{}\n'.format(mapping))
output_file.write('\n#### Relations ####\n\n')
for relation in self.__relations:
output_file.write('{}\n'.format(relation))
output_file.close()
print('Linked entities were stored at {}'.format(output_filename))
return output_filename
def make(self, triples_filename, links_filename, verbose=False):
if not triples_filename.startswith('/'):
triples_filename = os.path.dirname(
os.path.realpath(__file__)) + '/' + triples_filename
if not links_filename.startswith('/'):
links_filename = os.path.dirname(
os.path.realpath(__file__)) + '/' + links_filename
print('Processing predicates from {}'.format(triples_filename))
self.__predicates = {}
self.__prefixed = {
'http://www.w3.org/2000/01/rdf-schema#': 'rdfs',
'http://local/local.owl#': 'local'
}
self.__entities = {}
with open(links_filename, 'r') as links_file:
for line in links_file.readlines():
if len(line) < 2: continue
if line.startswith('@PREFIX'):
line_list = line.split()
prefix = line_list[1]
prefix = prefix[:prefix.rfind(':')]
uri = line_list[2]
uri = uri[uri.find('<') + 1:uri.find('>')]
self.__prefixed.update({uri: prefix})
elif line.startswith('@PREDICATE'):
line_list = line.split()
line = ' '.join(line_list[1:])
line_list = line.split(';')
predicate = line_list[0]
link = line_list[1]
self.__predicates.update({predicate: link})
elif line.startswith('@ENTITY'):
line_list = line.split()
line = ' '.join(line_list[1:])
line_list = line.split(';')
entity = line_list[0]
links = line_list[1].split(',')
self.__entities.update({entity: links})
links_file.close()
with open(triples_filename, 'r') as triples_file:
for line in triples_file.readlines():
line_lst = line.replace('\"', '').split('\t')
sentence_number = line_lst[0]
subject = line_lst[1]
predicate = line_lst[2]
object = line_lst[3]
if not predicate in self.__predicates:
print('Warning: predicate "{}" not found in links!'.format(
predicate))
continue
predicate_link = self.__predicates[predicate]
closest_subject = difflib.get_close_matches(
subject, self.__entities)
closest_object = difflib.get_close_matches(
object, self.__entities)
if len(closest_subject) < 1 or len(closest_object) < 1:
continue
subject_link = self.__entities[closest_subject[0]]
object_link = self.__entities[closest_object[0]]
triple = Triple(sentence_number, closest_subject[0], predicate,
closest_object[0], subject_link,
predicate_link, object_link)
prefixes, classes, properties, mapped, relation = triple.to_turtle(
)
self.__prefixed.update(prefixes)
self.__classes.update(classes)
self.__mapped_relations.update(mapped)
self.__properties.update(properties)
self.__relations.add(relation)
triples_file.close()
output_filename = os.path.splitext(triples_filename)[0]
output_filename = output_filename[:output_filename.rfind('_'
)] + '_kg.ttl'
open(output_filename, 'w').close() # Clean the file in case it exists
with open(output_filename, 'a') as output_file:
for key in self.__prefixed.keys():
output_file.write('@prefix\t{}:\t<{}>\t.\n'.format(
self.__prefixed[key], key))
output_file.write('\n#### Classes ####\n\n')
for key in self.__classes.keys():
output_file.write('{}\n\n'.format(self.__classes[key]))
output_file.write('#### Properties ####\n\n')
for key in self.__properties.keys():
output_file.write('{}\n\n'.format(self.__properties[key]))
output_file.write('#### Mapped Relations ####\n\n')
for mapping in self.__mapped_relations:
output_file.write('{}\n'.format(mapping))
output_file.write('\n#### Relations ####\n\n')
for relation in self.__relations:
output_file.write('{}\n'.format(relation))
output_file.close()
print('Linked entities were stored at {}'.format(output_filename))
return output_filename
