def __set_gnu_when_given(self):
"""Set datetime when given"""
# TODO Maybe add hours, minutes, etc.
if self.medication_statement:
start = safe_attrgetter(self.medication_statement,
self.map['when-given']['start'])
end = safe_attrgetter(self.medication_statement,
self.map['when-given']['end'])
if start:
p = supermod.Period()
p.start = supermod.dateTime(value=start.strftime('%Y/%m/%d'))
if end:
p.end = supermod.dateTime(value=end.strftime('%Y/%m/%d'))
self.set_whenGiven(p)
def __import_from_gnu_diagnostic_report(self):
"""Import data from the model"""
if self.diagnostic_report:
self.set_conclusion(safe_attrgetter(self.diagnostic_report, self.map['conclusion']))
self.set_subject(safe_attrgetter(self.diagnostic_report, self.map['subject']))
self.set_performer(safe_attrgetter(self.diagnostic_report, self.map['performer']))
self.set_issued(safe_attrgetter(self.diagnostic_report, self.map['date']))
self.set_result(safe_attrgetter(self.diagnostic_report, self.map['result']))
self.set_name(safe_attrgetter(self.diagnostic_report, self.map['test']))
self.set_identifier(
safe_attrgetter(self.diagnostic_report, self.map['test']),
safe_attrgetter(self.diagnostic_report, 'patient.rec_name'),
safe_attrgetter(self.diagnostic_report, self.map['date']))
def __import_from_gnu_organization(self):
if self.organization:
self.set_name(safe_attrgetter(self.organization,
self.map_['name']))
self.set_identifier(
safe_attrgetter(self.organization, self.map_['identifier']))
# Need selection text, not value
t = self.map_['type']
v = safe_attrgetter(self.organization, t)
d = dict(self.organization.fields_get(t)[t]['selection'])
self.set_type(d.get(v))
self.set_address(
safe_attrgetter(self.organization,
self.map_['address'],
default=[]))
self.set_telecom(
safe_attrgetter(self.organization, self.map_['contacts']))
self.set_active(True)
def __import_from_gnu_procedure(self):
"""Set the data from the model"""
if self.procedure:
self.set_subject(
safe_attrgetter(self.procedure, self.map['subject']))
self.set_type(safe_attrgetter(self.procedure, self.map['type']))
self.set_date(safe_attrgetter(self.procedure, self.map['date']),
safe_attrgetter(self.procedure, self.map['date']))
self.set_identifier(
safe_attrgetter(self.procedure, self.map['subject_name']),
safe_attrgetter(self.procedure, self.map['type']),
safe_attrgetter(self.procedure, self.map['date']))
def __import_from_gnu_practitioner(self):
"""Set data from model"""
if self.practitioner:
self.set_specialty(safe_attrgetter(self.practitioner, self.map['specialty']))
self.set_role(safe_attrgetter(self.practitioner, self.map['role']))
self.set_communication(safe_attrgetter(self.practitioner, self.map['communication']))
self.set_gender(safe_attrgetter(self.practitioner, self.map['gender']))
self.set_name(safe_attrgetter(self.practitioner, self.map['name']))
self.set_identifier(safe_attrgetter(self.practitioner, self.map['identifier']))
def __set_gnu_dosage(self):
"""Set dosage"""
# TODO Add better dosage info
# FIX On hold since many changes upcoming to the dosage
if self.medication_statement:
d = supermod.MedicationStatement_Dosage()
d.quantity = supermod.Quantity()
f = safe_attrgetter(self.medication_statement,
self.map['dose']['quantity'])
if f:
d.quantity.value = supermod.decimal(value=f)
u = safe_attrgetter(self.medication_statement,
self.map['dose']['units'])
if u:
d.quantity.units = supermod.string(value=u)
d.route = supermod.CodeableConcept()
r = safe_attrgetter(self.medication_statement,
self.map['dose']['route'])
if r:
d.route.coding = [supermod.Coding()]
d.route.coding[0].code = supermod.code(value=r.code)
d.route.coding[0].display = supermod.string(value=r.name)
d.route.text = supermod.string(r.name)
# PRN?
an = safe_attrgetter(self.medication_statement,
self.map['dose']['asNeededBoolean'])
if an:
self.set_asNeededBoolean(supermod.boolean(value=True))
d.timing = supermod.Schedule()
if self.medication_statement.infusion:
d.rate
def __import_from_gnu_condition(self):
"""Sets the data from the model"""
if self.condition:
self.set_code(safe_attrgetter(self.condition, self.map['code']))
self.set_subject(
safe_attrgetter(self.condition, self.map['subject']))
self.set_asserter(
safe_attrgetter(self.condition, self.map['asserter']))
self.set_dateAsserted(
safe_attrgetter(self.condition, self.map['dateAsserted']))
self.set_notes(safe_attrgetter(self.condition, self.map['notes']))
self.set_abatement(
safe_attrgetter(self.condition, self.map['abatementDate']))
self.set_severity(
safe_attrgetter(self.condition, self.map['severity']))
self.set_status('confirmed')
def __import_from_gnu_immunization(self):
"""Import the data from the Health model"""
if self.immunization:
self.set_date(safe_attrgetter(self.immunization,
self.map['date']))
self.set_expirationDate(safe_attrgetter(self.immunization,
self.map['expirationDate']))
self.set_subject(safe_attrgetter(self.immunization,
self.map['subject']))
self.set_performer(safe_attrgetter(self.immunization,
self.map['performer']))
self.set_lotNumber(safe_attrgetter(self.immunization,
self.map['lotNumber']))
self.set_doseQuantity(safe_attrgetter(self.immunization,
self.map['doseQuantity']))
self.set_route(safe_attrgetter(self.immunization,
self.map['route']))
self.set_site(safe_attrgetter(self.immunization,
self.map['site']))
self.set_vaccineType(safe_attrgetter(self.immunization,
self.map['vaccine-type']))
self.set_reported(reported=False)
self.set_refusedIndicator(refusedIndicator=False)
def set_address(self, addresses):
"""Extend superclass
Set the institution's address
Keyword arguments:
addresses - address models (party.address)
"""
ads = []
for address in addresses:
ad = supermod.Address()
ad.set_use(supermod.string(value='work'))
line = []
street, zip_, city, state, country = safe_attrgetter(
address, 'street', 'zip', 'city', 'subdivision.name',
'country.name')
# Deal with number in field maybe never
#if number:
#line.append(str(number))
if street:
line.append(street)
if line:
ad.add_line(supermod.string(value=' '.join(line)))
if city:
ad.set_city(supermod.string(value=city))
if state:
ad.set_state(supermod.string(value=state))
if zip_:
ad.set_zip(supermod.string(value=zip_))
if country:
ad.set_country(supermod.string(value=country))
ads.append(ad)
super(health_Organization, self).set_address(ads)
def set_address(self, address):
"""Extends superclass for convenience
Set patient's home address
Keyword arguments:
address -- domiciliary unit model
"""
if address:
ad = supermod.Address()
ad.set_use(supermod.string(value='home'))
line = []
number, street, zip_, city, state, country = safe_attrgetter(
address, 'address_street_number', 'address_street',
'address_zip', 'address_city', 'address_subdivision.name',
'address_country.name')
if number:
line.append(str(number))
if street:
line.append(street)
if line:
ad.add_line(supermod.string(value=' '.join(line)))
if city:
ad.set_city(supermod.string(value=city))
if state:
ad.set_state(supermod.string(value=state))
if zip_:
ad.set_zip(supermod.string(value=zip_))
if country:
ad.set_country(supermod.string(value=country))
super(health_Patient, self).set_address([ad])
def __import_from_gnu_medication(self):
"""Set the data from the model"""
if self.medication:
self.set_code(safe_attrgetter(self.medication, self.map['display']),
safe_attrgetter(self.medication, self.map['code']))
self.set_kind('product')
def __import_from_gnu_observation(self):
"""Set the data from the model"""
if self.gnu_obs:
self.set_identifier(
self.gnu_obs,
safe_attrgetter(self.gnu_obs, self.map_['patient']),
safe_attrgetter(self.gnu_obs, self.map_['date']))
self.set_subject(
safe_attrgetter(self.gnu_obs, self.map_['patient']))
self.set_comments(
safe_attrgetter(self.gnu_obs, self.map_['comments']))
self.set_valueQuantity(
safe_attrgetter(self.gnu_obs, self.model_field),
safe_attrgetter(self.gnu_obs, 'units.name'))
self.set_referenceRange(
safe_attrgetter(self.gnu_obs, 'units.name', default='unknown'),
safe_attrgetter(self.gnu_obs, 'lower_limit'),
safe_attrgetter(self.gnu_obs, 'upper_limit'))
self.set_interpretation(
safe_attrgetter(self.gnu_obs, self.model_field),
safe_attrgetter(self.gnu_obs, 'lower_limit'),
safe_attrgetter(self.gnu_obs, 'upper_limit'))
self.set_status(
safe_attrgetter(self.gnu_obs, self.map_['excluded']),
safe_attrgetter(self.gnu_obs, self.model_field))
self.set_reliability('ok')
self.set_issued(self.gnu_obs.write_date
or self.gnu_obs.create_date)
self.set_performer(
safe_attrgetter(self.gnu_obs, self.map_['performer']))
self.set_name(self.description)
def __import_from_gnu_patient(self):
"""Set data from the Patient model"""
if self.patient:
self.set_identifier(
safe_attrgetter(self.patient, self.map_['identifier']),
safe_attrgetter(self.patient, self.map_['alternative']))
self.set_name(safe_attrgetter(self.patient, 'name'))
self.set_telecom(
safe_attrgetter(self.patient, self.map_['contacts']))
self.set_gender(safe_attrgetter(self.patient, self.map_['gender']))
self.set_birthDate(
safe_attrgetter(self.patient, self.map_['birthDate']))
self.set_deceasedBoolean(
safe_attrgetter(self.patient, self.map_['deceased']))
self.set_deceasedDatetime(
safe_attrgetter(self.patient, self.map_['deceasedDateTime']))
self.set_address(
safe_attrgetter(self.patient, self.map_['address']))
self.set_maritalStatus(
safe_attrgetter(self.patient, self.map_['maritalStatus']))
self.set_photo(safe_attrgetter(self.patient, self.map_['photo']))
self.set_communication(
safe_attrgetter(self.patient, self.map_['communication']))
self.set_careProvider(
safe_attrgetter(self.patient, self.map_['careProvider']))
self.set_active(safe_attrgetter(self.patient, self.map_['active']))