def testDcjLinear(self):
cont = LinearContig(10)
res = dcj(cont, 2, cont, 6, True)
assert len(res) == 1
assert res[0].size == 10
assert res[0].isLinear() == True
res = dcj(cont, 2, cont, 6, False)
assert len(res) == 2
assert res[0].isLinear() == True
assert res[1].isCircular() == True
assert res[0].size == 6
assert res[1].size == 4
res = dcj(cont, 1, cont, 0, False)
assert len(res) == 2
assert res[0].isLinear() == True
assert res[1].isCircular() == True
assert res[0].size == 9
assert res[1].size == 1
res = dcj(cont, 1, cont, 1, False)
assert len(res) == 1
assert res[0].isLinear()
assert res[0].size == cont.size
res = dcj(cont, 1, cont, 1, True)
assert len(res) == 2
assert res[0].isLinear() and res[1].isLinear()
assert res[0].size + res[1].size == cont.size + 1
def testDcjLinearLinear(self):
c1 = LinearContig(100)
c2 = LinearContig(50)
res = dcj(c1, 30, c2, 20, True)
assert len(res) == 2
assert res[0].size == 51
assert res[1].size == 99
res = dcj(c1, 30, c2, 20, False)
assert len(res) == 2
assert res[0].size + res[1].size == 150
def testDcjLinearCircular(self):
c1 = LinearContig(10)
c2 = CircularContig(5)
res = dcj(c1, 3, c2, 0, True)
assert len(res) == 1
assert res[0].size == 15
assert res[0].isLinear() == True
res = dcj(c1, 3, c2, 3, False)
assert len(res) == 1
assert res[0].size == 15
assert res[0].isLinear() == True
def testDcjCircularCircular(self):
c1 = CircularContig(33)
c2 = CircularContig(15)
res = dcj(c1, 10, c2, 11, True)
assert len(res) == 1
assert res[0].isCircular() == True
assert res[0].size == 48
res = dcj(c1, 1, c2, 11, False)
assert len(res) == 1
assert res[0].isCircular() == True
assert res[0].size == 48
def testDcjCircular(self):
cont = CircularContig(10)
res = dcj(cont, 3, cont, 4, True)
assert len(res) == 1
assert res[0].isCircular() == True
assert res[0].size == 10
res = dcj(cont, 2, cont, 9, False)
assert len(res) == 2
assert res[0].isCircular() == True
assert res[0].size == 7
assert res[1].isCircular() == True
assert res[1].size == 3
res = dcj(cont, 2, cont, 2, False)
assert len(res) == 1
assert res[0].size == cont.size
assert type(res[0]) == type(cont)
res = dcj(cont, 2, cont, 2, True)
assert len(res) == 1
assert res[0].size == cont.size
assert res[0].isCircular() == False
