def setUpClass(cls):
cls.url = "http://{host}:{port}/chrompack".format(
host=defines.BIOPROCESS_HOST, port=defines.BIOPROCESS_PORT)
cls.db_connection = DbConnection(defines.MONGO_HOST,
defines.MONGO_USER,
defines.MONGO_PASS, defines.MONGO_DB,
defines.MONGO_PORT)
cls.collection = 'chrompack'
cls.user_test = 'test_chrompack_one_sample'
def get_valid_connection(self):
return DbConnection(defines.MONGO_HOST, defines.MONGO_USER,
defines.MONGO_PASS, defines.MONGO_DB,
defines.MONGO_PORT)
def test_port_type_wrong(self):
with self.assertRaisesRegex(TypeError,
"port must be a int, not <class 'str'>"):
DbConnection("hostname", "username", "password", "database",
"port")
def test_database_type_wrong(self):
with self.assertRaisesRegex(
TypeError, "database must be a string, not <class 'int'>"):
DbConnection("hostname", "username", "password", 123, 123)
def get_instance(self):
return DbConnection(defines.MONGO_HOST, defines.MONGO_USER,
defines.MONGO_PASS, defines.MONGO_DB,
defines.MONGO_PORT)
def initialize_directory_data():
if not os.path.exists(defines.DATA_PATH):
os.mkdir(defines.DATA_PATH)
if not os.path.exists(defines.DATA_CHROMPACK):
os.mkdir(defines.DATA_CHROMPACK)
if not os.path.exists(defines.DATA_SAMPLE):
os.mkdir(defines.DATA_SAMPLE)
db_connection = DbConnection(defines.MONGO_HOST, defines.MONGO_USER,
defines.MONGO_PASS, defines.MONGO_DB,
defines.MONGO_PORT)
params_api = {'upload_folder': 'data', 'db_connection': db_connection}
app = Flask(__name__)
initialize_directory_data()
CORS(app)
api = Api(app)
app.config["JSON_SORT_KEYS"] = False
app.config['JWT_SECRET_KEY'] = defines.SECRET_KEY
JWTManager(app)