def test_RunMINE_run(self):
infile_var = "Spellman2.csv"
jobID_var = "tOut"
mine = RunMINE(infile=infile_var, pdir=self.data_dir, wdir=self.working_dir,
jobID=jobID_var, comparison="-allPairs", check_exist=False)
mine.run(True)
self.assertTrue(mine.check_outfiles_with_filetag_exist(self.working_dir + infile_var + "," + jobID_var))
def test_outfile_already_exist(self):
"""
check if out file already exists,
maybe should not raise error, should
TODO: maybe it should be handle it at different way, auto rename?
"""
infile_var = "Spellman2.csv"
jobID_var = "exist"
mine = RunMINE(infile=infile_var, pdir=self.data_dir, wdir=self.working_dir,
jobID=jobID_var, comparison="0", check_exist=False)
mine.run(debug=0)
with self.assertRaises(IOError):
RunMINE(infile=infile_var, pdir=self.data_dir, wdir=self.working_dir,
jobID=jobID_var, comparison="0", check_exist=True)
