def test_RunGenovo_run(self):
infile_var = "tIn.fasta"
outfile_var = "tOut.fasta"
genovo = RunGenovo(infile=infile_var, outfile=outfile_var,
pdir=self.data_dir, no_iter=10, thresh=100,
check_exist=True)
is_exist, _ = genovo.check_outfiles_with_filetag_exist(self.data_dir + infile_var)
self.assertFalse(is_exist)
genovo.run()
is_exist, _ = genovo.check_outfiles_with_filetag_exist(self.data_dir + infile_var)
self.assertTrue(is_exist)
self.assertTrue(genovo.is_file_exist(self.data_dir + "tOut.fasta", True))
os.remove(self.data_dir + outfile_var)
