def _get_pipeline(self):
from core.vistrail.pipeline import Pipeline
import db.services.vistrail
workflow = db.services.vistrail.materializeWorkflow(self.abstraction,
self.version)
Pipeline.convert(workflow)
return workflow
def getPipeline(actions):
from db.domain import DBWorkflow
from db.services.vistrail import performActions
from core.vistrail.pipeline import Pipeline
workflow = DBWorkflow()
performActions(actions, workflow)
Pipeline.convert(workflow)
return workflow
def get_workflow_diff(vt, v1, v2):
from core.vistrail.pipeline import Pipeline
(v1, v2, pairs, v1Only, v2Only, paramChanges, _, _, _) = \
db.services.vistrail.getWorkflowDiff(vt, v1, v2, True)
Pipeline.convert(v1)
v1.set_abstraction_map(vt.abstractionMap)
Pipeline.convert(v2)
v2.set_abstraction_map(vt.abstractionMap)
# print 'pairs:', pairs
# print 'v1Only:', v1Only
# print 'v2Only:', v2Only
# print 'paramChanges:', paramChanges
return (v1, v2, pairs, v1Only, v2Only, paramChanges)
def get_workflow_diff_with_connections(vt_pair_1, vt_pair_2):
"""get_workflow_diff_with_connections
Similar to get_workflow_diff but with connection pairings.
"""
from core.vistrail.pipeline import Pipeline
(v1, v2, m_pairs, m_heuristic, v1_only, v2_only, param_changes, \
c_pairs, c_heuristic, c1_only, c2_only) = \
db.services.vistrail.getWorkflowDiff(vt_pair_1, vt_pair_2, False)
Pipeline.convert(v1)
Pipeline.convert(v2)
return (v1, v2, m_pairs, m_heustric, v1_only, v2_only, param_changes,
c_pairs, c_heuristic, c1_only, c2_only)
def convert(_group):
if _group.__class__ == Group:
return
_group.__class__ = Group
if _group.db_location:
Location.convert(_group.db_location)
if _group.db_workflow:
from core.vistrail.pipeline import Pipeline
Pipeline.convert(_group.db_workflow)
for _function in _group.db_functions:
ModuleFunction.convert(_function)
for _annotation in _group.db_get_annotations():
Annotation.convert(_annotation)
_group.set_defaults()
def get_workflow_diff(vt_pair_1, vt_pair_2):
"""get_workflow_diff( tuple(Vistrail, id), tuple(Vistrail, id) ) ->
Pipeline, Pipeline, [tuple(id, id)], [tuple(id, id)],
[id], [id], [tuple(id, id, list)]
Return a difference between two workflows referenced as vistrails.
"""
from core.vistrail.pipeline import Pipeline
(v1, v2, pairs, heuristic_pairs, v1_only, v2_only, param_changes, \
_, _, _, _) = \
db.services.vistrail.getWorkflowDiff(vt_pair_1, vt_pair_2, True)
Pipeline.convert(v1)
Pipeline.convert(v2)
return (v1, v2, pairs, heuristic_pairs, v1_only, v2_only, param_changes)
def convert(_group):
if _group.__class__ == Group:
return
_group.__class__ = Group
_group._registry = None
_group.portVisible = set()
if _group.db_location:
Location.convert(_group.db_location)
if _group.db_workflow:
from core.vistrail.pipeline import Pipeline
Pipeline.convert(_group.db_workflow)
for _function in _group.db_functions:
ModuleFunction.convert(_function)
for _annotation in _group.db_get_annotations():
Annotation.convert(_annotation)
def get_workflow_diff_with_connections(vt, v1, v2):
from core.vistrail.pipeline import Pipeline
(v1, v2, mPairs, v1Only, v2Only, paramChanges, cPairs, c1Only, c2Only) = \
db.services.vistrail.getWorkflowDiff(vt, v1, v2, False)
Pipeline.convert(v1)
v1.set_abstraction_map(vt.abstractionMap)
Pipeline.convert(v2)
v2.set_abstraction_map(vt.abstractionMap)
# print 'mPairs:', mPairs
# print 'v1Only:', v1Only
# print 'v2Only:', v2Only
# print 'paramChanges:', paramChanges
# print 'cPairs:', cPairs
# print 'c1Only:', c1Only
# print 'c2Only:', c2Only
return (v1, v2, pairs, v1Only, v2Only, paramChanges,
cPairs, c1Only, c2Only)
def open_workflow(filename):
from core.vistrail.pipeline import Pipeline
workflow = db.services.io.open_workflow_from_xml(filename)
Pipeline.convert(workflow)
return workflow
def get_workflow(vt, version):
from core.vistrail.pipeline import Pipeline
workflow = db.services.vistrail.materializeWorkflow(vt, version)
Pipeline.convert(workflow)
return workflow
def expand_workflow(vt, workflow=None, version=None):
from core.vistrail.pipeline import Pipeline
(workflow, module_remap) = \
db.services.vistrail.expandWorkflow(vt, workflow, version)
Pipeline.convert(workflow)
return (workflow, module_remap)
