def get():
l = []
solution, s_mul, s_equal = get_solution()
d0 = 0.8
f_beta_rm = lambda f: (1 - f) / (d0 + f * (1 - d0))
y = 2.5
v = numpy.arange(0.1, 1.2, 0.1)
for x in v:
d = {}
for keys in s_mul:
update(solution, d, keys)
l += [pl(d, '*', **{'name': ''})]
d = {}
for keys in s_equal:
update(solution, d, keys)
misc.dict_update(d, {'nest': {'ST': {'beta_I_AMPA_1': f_beta_rm(y)}}})
misc.dict_update(d, {'nest': {'ST': {'beta_I_NMDA_1': f_beta_rm(y)}}})
misc.dict_update(d, {'nest': {'GA_M1_gaba': {'weight': x}}})
misc.dict_update(d, {'nest': {'GA_M2_gaba': {'weight': x}}})
misc.dict_update(d, {'nest': {'GA_FS_gaba': {'weight': x}}})
d['node']['EA']['rate'] *= 0.7
l[-1] += pl(d, '=', **{'name': ('mod_GA_striatum_1' + str(x))})
return l
def get():
l = []
solution, s_mul, s_equal = get_solution_slow_GP_striatum()
d0 = 0.8
f_beta_rm = lambda f: (1 - f) / (d0 + f * (1 - d0))
v = STN_ampa_gaba_input_magnitude()
for _, x, y in v:
# x=2.5-1
d = {}
for keys in s_mul:
update(solution, d, keys)
l += [pl(d, '*', **{'name': ''})]
d = {}
for keys in s_equal:
update(solution, d, keys)
# misc.dict_update(d,{'nest':{'ST':{'beta_I_AMPA_1': f_beta_rm(x)}}})
# misc.dict_update(d,{'nest':{'ST':{'beta_I_NMDA_1': f_beta_rm(x)}}})
# d['node']['EA']['rate']*=0.7
misc.dict_update(d, {'node': {'CS': {'rate': x}}})
misc.dict_update(d, {'nest': {'GI_ST_gaba': {'weight': y}}})
l[-1] += pl(d, '=', **{'name': 'mod_ST_inp_' + str(x) + '_' + str(y)})
return l
def get():
l=[]
solution, s_mul, s_equal=get_solution_slow_GP_striatum()
d0=0.8
f_beta_rm=lambda f: (1-f)/(d0+f*(1-d0))
v=STN_ampa_gaba_input_magnitude()
for _, x, y in v:
# x=2.5-1
d={}
for keys in s_mul: update(solution, d, keys)
l+=[pl(d, '*', **{'name':''})]
d={}
for keys in s_equal: update(solution, d, keys)
# misc.dict_update(d,{'nest':{'ST':{'beta_I_AMPA_1': f_beta_rm(x)}}})
# misc.dict_update(d,{'nest':{'ST':{'beta_I_NMDA_1': f_beta_rm(x)}}})
# d['node']['EA']['rate']*=0.7
misc.dict_update(d,{'node':{'CS':{'rate': x}}})
misc.dict_update(d,{'nest':{'GI_ST_gaba':{'weight':y }}})
l[-1]+=pl(d, '=', **{'name':'mod_ST_inp_'+str(x)+'_'+str(y)})
return l
def get():
l = []
solution, s_mul, s_equal = get_solution_slow_GP_striatum_2()
for y in numpy.arange(1.0, -0.1, -0.25):
for z in numpy.arange(1.0, -0.1, -0.25):
x = 2.5
d = {}
for keys in s_mul:
update(solution, d, keys)
misc.dict_update(d, {'nest': {'GI_GA_gaba': {'weight': y}}})
misc.dict_update(d, {'nest': {'ST_GA_ampa': {'weight': z}}})
l += [pl(d, '*', **{'name': ''})]
d = {}
for keys in s_equal:
update(solution, d, keys)
l[-1] += pl(d, '=',
**{'name': 'GIGA_' + str(y) + '_STGA_' + str(z)})
return l
def get():
l = []
solution, s_mul, s_equal = get_solution_slow_GP_striatum()
d0 = 0.8
f_beta_rm = lambda f: (1 - f) / (d0 + f * (1 - d0))
x = 2.5
d = {}
for keys in s_mul:
update(solution, d, keys)
l += [pl(d, '*', **{'name': ''})]
d = {}
for keys in s_equal:
update(solution, d, keys)
misc.dict_update(d, {'nest': {'ST': {'beta_I_AMPA_1': f_beta_rm(x)}}})
misc.dict_update(d, {'nest': {'ST': {'beta_I_NMDA_1': f_beta_rm(x)}}})
d['node']['EA']['rate'] *= 0.7
l[-1] += pl(d, '=', **{'name': 'mod_ST_beta_' + str(x)})
return l
def get():
l=[]
solution, s_mul, s_equal=get_solution_slow_GP_striatum()
d0=0.8
f_beta_rm=lambda f: (1-f)/(d0+f*(1-d0))
x=2.5
d={}
for keys in s_mul: update(solution, d, keys)
l+=[pl(d, '*', **{'name':''})]
d={}
for keys in s_equal: update(solution, d, keys)
misc.dict_update(d,{'nest':{'ST':{'beta_I_AMPA_1': f_beta_rm(x)}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_NMDA_1': f_beta_rm(x)}}})
d['node']['EA']['rate']*=0.7
l[-1]+=pl(d, '=', **{'name':'mod_ST_beta_'+str(x)})
return l
def get():
l=[]
solution, s_mul, s_equal=get_solution()
d0=0.8
f_beta_rm=lambda f: (1-f)/(d0+f*(1-d0))
y=2.5
v=numpy.arange(0.1,1.2,0.1)
for x in v:
d={}
for keys in s_mul: update(solution, d, keys)
l+=[pl(d, '*', **{'name':''})]
d={}
for keys in s_equal: update(solution, d, keys)
misc.dict_update(d,{'nest':{'ST':{'beta_I_AMPA_1': f_beta_rm(y)}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_NMDA_1': f_beta_rm(y)}}})
misc.dict_update(d,{'nest':{'GA_M1_gaba':{'weight': x}}})
misc.dict_update(d,{'nest':{'GA_M2_gaba':{'weight': x}}})
misc.dict_update(d,{'nest':{'GA_FS_gaba':{'weight': x}}})
d['node']['EA']['rate']*=0.7
l[-1]+=pl(d, '=', **{'name':('mod_GA_striatum_1' + str(x))
})
return l
def get():
l = []
solution, s_mul, s_equal = get_solution()
d0 = 0.8
f_beta_rm = lambda f: (1 - f) / (d0 + f * (1 - d0))
# betas MS-MS
v = numpy.arange(1.5, 3, 0.25)
for x in v:
d = {}
for keys in s_mul:
update(solution, d, keys)
l += [pl(d, '*', **{'name': ''})]
d = {}
for keys in s_equal:
update(solution, d, keys)
misc.dict_update(d, {'nest': {'ST': {'beta_I_AMPA_1': f_beta_rm(x)}}})
misc.dict_update(d, {'nest': {'ST': {'beta_I_NMDA_1': f_beta_rm(x)}}})
l[-1] += pl(d, '=', **{'name': 'mod_ST_beta_' + str(x)})
v1 = numpy.arange(0.1, 1, 0.2)
for x in v1:
d = {}
for keys in s_mul:
update(solution, d, keys)
l += [pl(d, '*', **{'name': ''})]
d = {}
for keys in s_equal:
update(solution, d, keys)
d['node']['EA']['rate'] *= x
l[-1] += pl(d, '=', **{'name': 'mod_EA_' + str(x)})
v2 = numpy.arange(1.1, 2, 0.2)
for x in v2:
d = {}
for keys in s_mul:
update(solution, d, keys)
l += [pl(d, '*', **{'name': ''})]
d = {}
for keys in s_equal:
update(solution, d, keys)
d['node']['EI']['rate'] *= x
l[-1] += pl(d, '=', **{'name': 'mod_EI_' + str(x)})
return l
def get():
l=[]
solution, s_mul, s_equal=get_solution()
d0=0.8
f_beta_rm=lambda f: (1-f)/(d0+f*(1-d0))
# betas MS-MS
v=numpy.arange(1.5,3,0.25)
for x in v:
d={}
for keys in s_mul: update(solution, d, keys)
l+=[pl(d, '*', **{'name':''})]
d={}
for keys in s_equal: update(solution, d, keys)
misc.dict_update(d,{'nest':{'ST':{'beta_I_AMPA_1': f_beta_rm(x)}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_NMDA_1': f_beta_rm(x)}}})
l[-1]+=pl(d, '=', **{'name':'mod_ST_beta_'+str(x)})
v1=numpy.arange(0.1, 1, 0.2)
for x in v1:
d={}
for keys in s_mul: update(solution, d, keys)
l+=[pl(d, '*', **{'name':''})]
d={}
for keys in s_equal: update(solution, d, keys)
d['node']['EA']['rate']*=x
l[-1]+=pl(d, '=', **{'name':'mod_EA_'+str(x)})
v2=numpy.arange(1.1, 2, 0.2)
for x in v2:
d={}
for keys in s_mul: update(solution, d, keys)
l+=[pl(d, '*', **{'name':''})]
d={}
for keys in s_equal: update(solution, d, keys)
d['node']['EI']['rate']*=x
l[-1]+=pl(d, '=', **{'name':'mod_EI_'+str(x)})
return l
def merge(*args):
solution={}
# s_mul=[]
# s_equal=[]
for f in args:
s=f()
misc.dict_update(solution,s)
return solution
def get():
l = []
solution, s_mul, s_equal = get_solution()
d0 = 0.8
f_beta_rm = lambda f: (1 - f) / (d0 + f * (1 - d0))
# v=STN_ampa_gaba_input_magnitude()[0:5]
for _, u, w in v:
v0 = numpy.arange(1.25, 3.75, 1.)
v1 = numpy.arange(1.5, 4, 1.)
v = [[x, y] for x in v0 for y in v1]
for x, y in v:
d = {}
for keys in s_mul:
update(solution, d, keys)
l += [pl(d, '*', **{'name': ''})]
d = {}
for keys in s_equal:
update(solution, d, keys)
misc.dict_update(
d, {'nest': {
'ST': {
'beta_I_GABAA_1': f_beta_rm(x)
}
}})
misc.dict_update(d,
{'nest': {
'ST': {
'beta_I_AMPA_1': f_beta_rm(y)
}
}})
misc.dict_update(d,
{'nest': {
'ST': {
'beta_I_NMDA_1': f_beta_rm(y)
}
}})
misc.dict_update(d, {'node': {'CS': {'rate': u}}})
misc.dict_update(d, {'nest': {'GI_ST_gaba': {'weight': w}}})
d['node']['EA']['rate'] *= 0.7
l[-1] += pl(
d, '=', **{
'name': ('mod_ST_beta_' + str(u) + '_' + str(w) + '_' +
str(x) + '_' + str(y))
})
return l
def get():
l=[]
solution, s_mul, s_equal=get_solution()
d0=0.8
f_beta_rm=lambda f: (1-f)/(d0+f*(1-d0))
x=2.5-1.25
d={}
for keys in s_mul: update(solution, d, keys)
l+=[pl(d, '*', **{'name':''})]
d={}
for keys in s_equal: update(solution, d, keys)
misc.dict_update(d,{'nest':{'ST':{'beta_I_AMPA_1': f_beta_rm(x)}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_NMDA_1': f_beta_rm(x)}}})
d['node']['EA']['rate']*=0.7
misc.dict_update(d,{'node':{'CS':{'rate': 830.}}})
misc.dict_update(d,{'nest':{'GI_ST_gaba':{'weight':0.35 }}})
l[-1]+=pl(d, '=', **{'name':'mod_ST_beta_'+str(x)})
return l
def get():
l = []
solution, s_mul, s_equal = get_solution()
d0 = 0.8
f_beta_rm = lambda f: (1 - f) / (d0 + f * (1 - d0))
x = 2.5 - 1.25
d = {}
for keys in s_mul:
update(solution, d, keys)
l += [pl(d, '*', **{'name': ''})]
d = {}
for keys in s_equal:
update(solution, d, keys)
misc.dict_update(d, {'nest': {'ST': {'beta_I_AMPA_1': f_beta_rm(x)}}})
misc.dict_update(d, {'nest': {'ST': {'beta_I_NMDA_1': f_beta_rm(x)}}})
d['node']['EA']['rate'] *= 0.7
misc.dict_update(d, {'node': {'CS': {'rate': 830.}}})
misc.dict_update(d, {'nest': {'GI_ST_gaba': {'weight': 0.35}}})
l[-1] += pl(d, '=', **{'name': 'mod_ST_beta_' + str(x)})
return l
def get():
l=[]
solution, s_mul, s_equal=get_solution_slow_GP_striatum()
d0=0.8
f_beta_rm=lambda f: (1-f)/(d0+f*(1-d0))
x=2.5
d={}
for y in [12]+ list(numpy.arange(5,55,5)):
# x=3.4
# y=2.25
for keys in s_mul: update(solution, d, keys)
l+=[pl(d, '*', **{'name':''})]
d={}
for keys in s_equal: update(solution, d, keys)
ratio=12./y
dd={'nest':{'GA_M1_gaba':{'weight':0.8*ratio},
'GA_M2_gaba':{'weight':0.8*ratio}}}
misc.dict_update(d,dd)
# Decreasing from 2 leads to ...
# Increasing from 2 leads to ...
dd={'nest':{'GA_FS_gaba':{'weight':2.*ratio}}}
misc.dict_update(d,dd)
# Just assumed to be 12 ms
dd={'nest':{'M1_low':{'GABAA_3_Tau_decay':12./ratio},
'M2_low':{'GABAA_3_Tau_decay':12./ratio},
'FS_low':{'GABAA_2_Tau_decay':12./ratio},
}}
misc.dict_update(d,dd)
misc.dict_update(d,{'nest':{'ST':{'beta_I_AMPA_1': f_beta_rm(x)}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_NMDA_1': f_beta_rm(x)}}})
d['node']['EA']['rate']*=0.7
l[-1]+=pl(d, '=', **{'name':'mod_GAtau_'+str(y)})
return l
def get():
l = []
solution = get_solution()
d = {}
misc.dict_update(d, solution['mul'])
l += [pl(d, '*', **{'name': ''})]
d = {}
misc.dict_update(d, solution['equal'])
l[-1] += pl(d, '=', **{'name': 'control_sim'})
r_EI = [1000, 1600] #range(1000, 1200, 50)+range(1550, 1900, 50)
r_EA = range(100, 1500, 100)
r_CS = [180, 250]
w_STGA = numpy.linspace(1, 0.0, 15)
agg = [[r0, r1, r2, w] for r0, r2 in zip(r_EI, r_CS) for r1 in r_EA
for w in w_STGA]
for rEI, rEA, rCS, w in agg:
rEI = float(rEI)
rEA = float(rEA)
rCS = float(rCS)
w = float(w)
d = {}
misc.dict_update(d, solution['mul'])
d['nest']['ST_GA_ampa']['weight'] *= w
l += [pl(d, '*', **{'name': ''})]
d = {}
misc.dict_update(d, solution['equal'])
d['node']['EI']['rate'] = rEI
d['node']['EA']['rate'] = rEA
misc.dict_update(d, {'node': {'CS': {'rate': rCS}}})
s = 'rEI_{0}_rEA_{1}_rCS_{2}_STGAw_{3}'.format(rEI, rEA, rCS,
round(w, 2))
l[-1] += pl(d, '=', **{'name': s})
return l
def get():
l=[]
solution, s_mul, s_equal=get_solution()
d0=0.8
f_beta_rm=lambda f: (1-f)/(d0+f*(1-d0))
v0=numpy.arange(1.25,3.75,0.5)
v1=numpy.arange(2.5, 5.,0.5)
v=[[x,y] for x in v0 for y in v1]
for x, y in v:
d={}
for keys in s_mul: update(solution, d, keys)
l+=[pl(d, '*', **{'name':''})]
d={}
for keys in s_equal: update(solution, d, keys)
misc.dict_update(d,{'nest':{'ST':{'beta_I_GABAA_1': f_beta_rm(x)}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_AMPA_1': f_beta_rm(y)}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_NMDA_1': f_beta_rm(y)}}})
d['node']['EA']['rate']*=0.7
l[-1]+=pl(d, '=', **{'name':('mod_ST_beta_'
+str(x)+'_'+str(y))
})
return l
def get():
l = []
solution = get_solution()
d = {}
misc.dict_update(d, solution['mul'])
l += [pl(d, '*', **{'name': ''})]
d = {}
misc.dict_update(d, solution['equal'])
dd = {
'conn': {
'GAp_GA_gaba': {
'fan_in': 5
},
'GIp_GA_gaba': {
'fan_in': 25
}
},
'nest': {
'ST_GA_ampa': {
'weight': 0.259
}
}
} #estimate from beta opt
misc.dict_update(d, dd)
l[-1] += pl(d, '=', **{'name': 'control_sim'})
return l
def get_solution_slow():
solution={'mul':{},
'equal':{}}
# Decreasing from 0.8 leads to ...
# Increasing from 0.8 leads to ...
d={'nest':{'GA_M1_gaba':{'weight':0.8/5},
'GA_M2_gaba':{'weight':0.8/5}}}
misc.dict_update(solution,{'equal':d})
# Decreasing from 2 leads to ...
# Increasing from 2 leads to ...
d={'nest':{'GA_FS_gaba':{'weight':2./5}}}
misc.dict_update(solution,{'equal':d})
# Just assumed to be 12 ms
d={'nest':{'M1_low':{'GABAA_3_Tau_decay':12.*5},
'M2_low':{'GABAA_3_Tau_decay':12.*5},
'FS_low':{'GABAA_2_Tau_decay':12.*5},
}}
misc.dict_update(solution,{'equal':d})
return solution
def get():
l=[]
solution, s_mul, s_equal=get_solution()
d0=0.8
f_beta_rm=lambda f: (1-f)/(d0+f*(1-d0))
for nodes in [['M1', 'M2'],
['M1', 'M2', 'FS'],
['M1', 'M2', 'FS','ST', 'GA', 'GI','SN']]:
x=2.5
d={}
for keys in s_mul: update(solution, d, keys)
l+=[pl(d, '*', **{'name':''})]
d={}
for keys in s_equal: update(solution, d, keys)
misc.dict_update(d,{'nest':{'ST':{'beta_I_AMPA_1': f_beta_rm(x)}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_NMDA_1': f_beta_rm(x)}}})
d['node']['EA']['rate']*=0.7
for node in nodes:
misc.dict_update(d,{'node':{node:{'edge_wrap':False}}})
l[-1]+=pl(d, '=', **{'name':'mod_ST_beta_'+str(x)})
return l
def get():
l=[]
solution, s_mul, s_equal=get_solution()
d0=0.8
f_beta_rm=lambda f: (1-f)/(d0+f*(1-d0))
# v=STN_ampa_gaba_input_magnitude()[0:5]
for _, u, w in v:
v0=numpy.arange(1.25, 3.75, 1.)
v1=numpy.arange(1.5, 4, 1.)
v=[[x,y] for x in v0 for y in v1]
for x, y in v:
d={}
for keys in s_mul: update(solution, d, keys)
l+=[pl(d, '*', **{'name':''})]
d={}
for keys in s_equal: update(solution, d, keys)
misc.dict_update(d,{'nest':{'ST':{'beta_I_GABAA_1': f_beta_rm(x)}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_AMPA_1': f_beta_rm(y)}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_NMDA_1': f_beta_rm(y)}}})
misc.dict_update(d,{'node':{'CS':{'rate': u}}})
misc.dict_update(d,{'nest':{'GI_ST_gaba':{'weight':w }}})
d['node']['EA']['rate']*=0.7
l[-1]+=pl(d, '=', **{'name':('mod_ST_beta_'
+str(u)+'_'+str(w)+'_'
+str(x)+'_'+str(y))
})
return l
def get():
l = []
solution = get_solution()
d = {}
misc.dict_update(d, solution['mul'])
l += [pl(d, '*', **{'name': ''})]
d = {}
misc.dict_update(d, solution['equal'])
dd = {
'conn': {
'GAp_GA_gaba': {
'fan_in': 5
},
'GIp_GA_gaba': {
'fan_in': 25
}
}
}
misc.dict_update(d, dd)
l[-1] += pl(d, '=', **{'name': 'control_sim'})
return l
def get():
l = []
solution, s_mul, s_equal = get_solution()
d0 = 0.8
f_beta_rm = lambda f: (1 - f) / (d0 + f * (1 - d0))
v0 = numpy.arange(1.25, 3.75, 0.5)
v1 = numpy.arange(2.5, 5., 0.5)
v = [[x, y] for x in v0 for y in v1]
for x, y in v:
d = {}
for keys in s_mul:
update(solution, d, keys)
l += [pl(d, '*', **{'name': ''})]
d = {}
for keys in s_equal:
update(solution, d, keys)
misc.dict_update(d, {'nest': {'ST': {'beta_I_GABAA_1': f_beta_rm(x)}}})
misc.dict_update(d, {'nest': {'ST': {'beta_I_AMPA_1': f_beta_rm(y)}}})
misc.dict_update(d, {'nest': {'ST': {'beta_I_NMDA_1': f_beta_rm(y)}}})
d['node']['EA']['rate'] *= 0.7
l[-1] += pl(d, '=',
**{'name': ('mod_ST_beta_' + str(x) + '_' + str(y))})
return l
def get():
l = []
solution, s_mul, s_equal = get_solution()
d0 = 0.8
f_beta_rm = lambda f: (1 - f) / (d0 + f * (1 - d0))
d = {}
for x in numpy.arange(3.4, 6, 0.4):
# x=3.4
y = 2.25
for keys in s_mul:
update(solution, d, keys)
l += [pl(d, '*', **{'name': ''})]
d = {}
for keys in s_equal:
update(solution, d, keys)
print f_beta_rm(x)
misc.dict_update(d, {'nest': {'ST': {'beta_I_AMPA_1': f_beta_rm(x)}}})
misc.dict_update(d, {'nest': {'ST': {'beta_I_NMDA_1': f_beta_rm(x)}}})
misc.dict_update(d, {'nest': {'ST': {'beta_I_GABAA_1': f_beta_rm(y)}}})
# d['node']['EA']['rate']*=0.7
l[-1] += pl(
d, '=',
**{'name': 'mod_CS_STbeta_' + str(x) + '_GA_STbeta_' + str(y)})
return l
def get():
l = []
solution = get_solution()
d = {}
misc.dict_update(d, solution['mul'])
l += [pl(d, '*', **{'name': ''})]
d = {}
misc.dict_update(d, solution['equal'])
l[-1] += pl(d, '=', **{'name': 'control_sim'})
r_EI = range(1000, 1200, 50) + range(1550, 1900, 50)
r_EA = range(100, 800, 100)
r_CS = range(180, 260, 10)
agg = [[r0, r1, r2] for r0 in r_EI for r1 in r_EA for r2 in r_CS]
for rEI, rEA, rCS in agg:
rEI = float(rEI)
rEA = float(rEA)
rCS = float(rCS)
d = {}
misc.dict_update(d, solution['mul'])
l += [pl(d, '*', **{'name': ''})]
d = {}
misc.dict_update(d, solution['equal'])
d['node']['EI']['rate'] = rEI
d['node']['EA']['rate'] = rEA
misc.dict_update(d, {'node': {'CS': {'rate': rCS}}})
s = 'rEI_{0}_rEA_{1}_rCS_{2}'.format(rEI, rEA, rCS)
l[-1] += pl(d, '=', **{'name': s})
return l
def get():
l=[]
solution, s_mul, s_equal=get_solution_slow_GP_striatum()
d0=0.8
f_beta_rm=lambda f: (1-f)/(d0+f*(1-d0))
d={}
for x in numpy.arange(3.4, 6, 0.4):
# x=3.4
y=2.25
for keys in s_mul: update(solution, d, keys)
l+=[pl(d, '*', **{'name':''})]
d={}
for keys in s_equal: update(solution, d, keys)
misc.dict_update(d,{'nest':{'ST':{'beta_I_AMPA_1': f_beta_rm(x)}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_NMDA_1': f_beta_rm(x)}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_GABAA_1': f_beta_rm(y)}}})
d['node']['EA']['rate']*=0.7
l[-1]+=pl(d, '=', **{'name':'mod_CS_STbeta_'+str(x)+'_GA_STbeta_'+str(y)})
return l
def get():
l = []
solution = get_solution()
for r in numpy.arange(0, 1200, 200):
r = numpy.float(r)
d = {}
misc.dict_update(d, solution['mul'])
l += [pl(d, '*', **{'name': ''})]
d = {}
misc.dict_update(d, solution['equal'])
dd = {
'conn': {
'GAp_GA_gaba': {
'fan_in': 5
},
'GIp_GA_gaba': {
'fan_in': 25
}
},
'node': {
'EAp': {
'rate': r
}
}
}
misc.dict_update(d, dd)
l[-1] += pl(d, '=', **{'name': 'GAr_{0}'.format(r)})
return l
def get():
l = []
solution, s_mul, s_equal = get_solution()
d0 = 0.8
f_beta_rm = lambda f: (1 - f) / (d0 + f * (1 - d0))
# betas MS-MS
v = [0.1, 0.25, 0.5, 0.75]
for x, y in [[v1, v2] for v1 in v for v2 in v]:
d = {}
for keys in s_mul:
update(solution, d, keys)
l += [pl(d, '*', **{'name': ''})]
d = {}
for keys in s_equal:
update(solution, d, keys)
misc.dict_update(d,
{'nest': {
'ST': {
'beta_I_AMPA_1': f_beta_rm(2.5)
}
}})
misc.dict_update(d,
{'nest': {
'ST': {
'beta_I_NMDA_1': f_beta_rm(2.5)
}
}})
d['node']['EA']['rate'] *= 0.7
misc.dict_update(d, {'nest': {'MS': {'beta_I_GABAA_2': f_beta_rm(x)}}})
for conn in ['M1_M1_gaba', 'M1_M2_gaba', 'M2_M1_gaba', 'M2_M2_gaba']:
misc.dict_update(d,
{'conn': {
conn: {
'beta_fan_in': f_beta_rm(y)
}
}})
l[-1] += pl(d, '=', **{'name': 'mod_MSg_' + str(x) + '_MSc_' + str(y)})
#beta CTX-STN
return l
def get():
l = []
solution = get_solution()
'''
From
script_0000_rEI_1600.0_rEA_0.0_rCS_250.0_wGA_1.0-amp_0.08_1.0_stn_3.0_0
in new_beginning beta slow (1.77)
'''
# misc.dict_update(solution, {'equal':{'node':{'M2p':{'rate':2.9}}}})
l = []
solution = get_solution()
d = {}
misc.dict_update(d, solution['mul'])
l += [pl(d, '*', **{'name': ''})]
d = {}
misc.dict_update(d, solution['equal'])
l[-1] += pl(d, '=', **{'name': 'control_sim'})
return l
def get_dopMSGI_rates_beta():
d0=0.8
f_beta_rm=lambda f: (1-f)/(d0+f*(1-d0))
factor_CSEI_rate=1.25
# factor_CF_rate=1.
solution={'mul':{},
'equal':{}}
d={'mul':{'node':{'CS':{'rate': factor_CSEI_rate}}}}
misc.dict_update(solution,d)
# d={'equal':{'node':{'EI':{'rate': 1400.*factor_CSEI_rate}}}}
# misc.dict_update(solution,d)
# d={'mul':{'node':{'CF':{'rate': factor_CF_rate}}}}
# misc.dict_update(solution,d)
d={'conn': {'GA_GA_gaba':{'fan_in0': 20},
'GI_GA_gaba':{'fan_in0': 10 }}}
misc.dict_update(solution,{'equal':d})
d={'equal':{'node':{'EI':{'rate':1400*factor_CSEI_rate}}}}
misc.dict_update(solution,d)
d={'equal':{'node':{'EA':{'rate': 0.0}}}}
misc.dict_update(solution,d)
d={'equal':{'nest':{'GI':{'beta_I_GABAA_1': f_beta_rm(2)}}}}
misc.dict_update(solution,d)
return solution
def get():
l = []
solution = get_solution_slow_GP_striatum_2()
d0 = 0.8
f_beta_rm = lambda f: (1 - f) / (d0 + f * (1 - d0))
for y in numpy.arange(1., 3., 1.):
d = {}
misc.dict_update(d, solution['mul'])
l += [pl(d, '*', **{'name': ''})]
d = {}
misc.dict_update(d, solution['equal'])
misc.dict_update(d, {'nest': {'GI': {'beta_I_GABAA_1': f_beta_rm(y)}}})
l[-1] += pl(d, '=', **{'name': 'mod_GI_beta_' + str(y)})
return l
def get():
l = []
solution, s_mul, s_equal = get_solution()
d0 = 0.8
f_beta_rm = lambda f: (1 - f) / (d0 + f * (1 - d0))
y = 2.5
v = [1. / 10., 3. / 10, 5. / 10, 7. / 10, 9. / 10]
for x in v:
d = {}
for keys in s_mul:
update(solution, d, keys)
misc.dict_update(d, {'conn': {'GA_M1_gaba': {'fan_in0': x}}})
misc.dict_update(d, {'conn': {'GA_M2_gaba': {'fan_in0': x}}})
misc.dict_update(d, {'nest': {'GA_M1_gaba': {'weight': 1. / x}}})
misc.dict_update(d, {'nest': {'GA_M2_gaba': {'weight': 1. / x}}})
l += [pl(d, '*', **{'name': ('mod_GA_MS_' + str(x))})]
d = {}
for keys in s_equal:
update(solution, d, keys)
misc.dict_update(d, {'nest': {'ST': {'beta_I_AMPA_1': f_beta_rm(y)}}})
misc.dict_update(d, {'nest': {'ST': {'beta_I_NMDA_1': f_beta_rm(y)}}})
d['node']['EA']['rate'] *= 0.7
l[-1] += pl(d, '=', **{'name': ''})
for x in v:
d = {}
for keys in s_mul:
update(solution, d, keys)
misc.dict_update(d, {'conn': {'GA_FS_gaba': {'fan_in0': x}}})
misc.dict_update(d, {'nest': {'GA_FS_gaba': {'weight': 1. / x}}})
l += [pl(d, '*', **{'name': ('mod_GA_FS_' + str(x))})]
d = {}
for keys in s_equal:
update(solution, d, keys)
misc.dict_update(d, {'nest': {'ST': {'beta_I_AMPA_1': f_beta_rm(y)}}})
misc.dict_update(d, {'nest': {'ST': {'beta_I_NMDA_1': f_beta_rm(y)}}})
d['node']['EA']['rate'] *= 0.7
l[-1] += pl(d, '=', **{'name': ''})
for x in v:
d = {}
for keys in s_mul:
update(solution, d, keys)
misc.dict_update(d, {'conn': {'GA_FS_gaba': {'fan_in0': x}}})
misc.dict_update(d, {'conn': {'GA_M1_gaba': {'fan_in0': x}}})
misc.dict_update(d, {'conn': {'GA_M2_gaba': {'fan_in0': x}}})
misc.dict_update(d, {'nest': {'GA_M1_gaba': {'weight': 1. / x}}})
misc.dict_update(d, {'nest': {'GA_M2_gaba': {'weight': 1. / x}}})
misc.dict_update(d, {'nest': {'GA_FS_gaba': {'weight': 1. / x}}})
l += [pl(d, '*', **{'name': ('mod_GA_str_' + str(x))})]
d = {}
for keys in s_equal:
update(solution, d, keys)
misc.dict_update(d, {'nest': {'ST': {'beta_I_AMPA_1': f_beta_rm(y)}}})
misc.dict_update(d, {'nest': {'ST': {'beta_I_NMDA_1': f_beta_rm(y)}}})
d['node']['EA']['rate'] *= 0.7
l[-1] += pl(d, '=', **{'name': ''})
return l
def get_solution():
solution = {'mul': {}, 'equal': {}}
#Decreasing from 0.25 leads to ...
#Increasing from 0.25 leads to ...
d = {
'nest': {
'M1_M1_gaba': {
'weight': 0.25
},
'M1_M2_gaba': {
'weight': 0.25
},
'M2_M1_gaba': {
'weight': 0.25
},
'M2_M2_gaba': {
'weight': 0.25
}
}
}
misc.dict_update(solution, {'mul': d})
# GA firing rate needs to be maintained, around 12 Hz for sw in
# dopamine depleted rats). When decreasing/increasing
# ST-GA one need to either compensate by changing inhibition from
# GPe and/or EA external input (assume that synapses from TA and TI
# are of equal strength.
# This script is first run where ST-GA GP-GA and EA individually are
# perturbed to determine each relative influence to TA firing rate.
# From this data then combinations fo changes that should results in
# 12 Hz TA firing rate are created.
d = {
'nest': {
'ST_GA_ampa': {
'weight': 0.25
},
'GA_GA_gaba': {
'weight': 0.25
},
'GI_GA_gaba': {
'weight': 0.25
}
}
}
misc.dict_update(solution, {'mul': d})
d = {'node': {'EA': {'rate': 200.0}}}
misc.dict_update(solution, {'equal': d})
# C1 and C2 have been set such that MSN D1 and MSN D2 fires at
# low firing rates (0.1-0,2 Hz).
d = {'node': {'C1': {'rate': 560.0}, 'C2': {'rate': 700.}}}
misc.dict_update(solution, {'equal': d})
# Set such that GPe TI fires in accordance with slow wave sleep
# in dopamine depleted rats.
d = {
'node': {
'EI': {
'rate': 1400.0
}
}
} # Increase with 340, to get close to 24 Hz sw dopamine depleted rats TI
misc.dict_update(solution, {'equal': d})
# Decrease weight since tau decay is 5 times stronger
d = {
'nest': {
'GA_M1_gaba': {
'weight': 0.8 / 5
},
'GA_M2_gaba': {
'weight': 0.8 / 5
}
}
}
misc.dict_update(solution, {'equal': d})
# Decrease weight since tau decay is 5 times stronger
d = {'nest': {'GA_FS_gaba': {'weight': 2. / 5}}}
misc.dict_update(solution, {'equal': d})
# Just assumed to be 12*5 ms
d = {
'nest': {
'M1_low': {
'GABAA_3_Tau_decay': 12. * 5
},
'M2_low': {
'GABAA_3_Tau_decay': 12. * 5
},
'FS_low': {
'GABAA_2_Tau_decay': 12. * 5
},
}
}
misc.dict_update(solution, {'equal': d})
#Dopamine such that STN increase above 50-100 %
x = 2.5
d = {
'nest': {
'ST': {
'beta_I_AMPA_1': f_beta_rm(x),
'beta_I_NMDA_1': f_beta_rm(x)
}
}
}
misc.dict_update(solution, {'equal': d})
# Delay ctx striatum and ctx stn set to 2.5 ms Jaeger 2011
y = 2.5
misc.dict_update(solution,
{'equal': {
'nest': {
'C1_M1_ampa': {
'delay': y
}
}
}})
misc.dict_update(solution,
{'equal': {
'nest': {
'C1_M1_nmda': {
'delay': y
}
}
}})
misc.dict_update(solution,
{'equal': {
'nest': {
'C2_M2_ampa': {
'delay': y
}
}
}})
misc.dict_update(solution,
{'equal': {
'nest': {
'C2_M2_nmda': {
'delay': y
}
}
}})
misc.dict_update(solution,
{'equal': {
'nest': {
'CF_FS_ampa': {
'delay': y
}
}
}})
# Dopamine effect on MS-GI
d = {'equal': {'nest': {'GI': {'beta_I_GABAA_1': f_beta_rm(2)}}}}
misc.dict_update(solution, d)
# GI predominently connect to to GA
d = {'conn': {'GA_GA_gaba': {'fan_in0': 5}, 'GI_GA_gaba': {'fan_in0': 25}}}
return solution
def get():
l = []
solution = get_solution()
d = {}
misc.dict_update(d, solution['mul'])
l += [pl(d, '*', **{'name': ''})]
d = {}
misc.dict_update(d, solution['equal'])
l[-1] += pl(d, '=', **{'name': 'control_sim'})
# Connectivity GPe-STN
v = STN_ampa_gaba_input_magnitude()
agg = []
for _, a, b in v:
agg += [[a, b] for _ in range(1)]
GP_ST_delays = [[3., 5.] for _ in range(len(agg))]
GP_ST_delays = reduce(lambda x, y: x + y, GP_ST_delays)
agg = [[e[:] for e in agg] for _ in range(2)]
agg = zip(*agg)
agg = reduce(lambda x, y: x[:] + y[:], agg)
for i in range(len(agg)):
agg[i].append(GP_ST_delays[i])
STN_beta_I = []
for f in [1.]:
STN_beta_I.append(
reversed(list(numpy.linspace(f * 1.8, f * 2.5, len(v)))))
STN_beta_I = zip(*STN_beta_I)
STN_beta_I = reduce(lambda x, y: x + y, STN_beta_I)
STN_beta_I = [[a, a] for a in STN_beta_I]
#
STN_beta_I = reduce(lambda x, y: x + y, STN_beta_I)
for i in range(len(agg)):
agg[i].append(STN_beta_I[i])
ll = [
{},
{
'a_1': .7,
'a_2': 0.,
'b': 0.15,
'Delta_T': 5.6,
'E_L': -55.6,
'V_a': -55.6,
'V_th': -50.0,
'g_L': 5.,
'V_reset_max_slope1': -50.
},
{
'a_1': 1.,
'a_2': 0.,
'b': 0.25,
'Delta_T': 2.8,
'E_L': -52.8,
'V_a': -52.8,
'V_th': -50.0,
'g_L': 5.,
'V_reset_max_slope1': -50.
},
]
p_STN = [ll for _ in range(len(agg))]
p_STN = reduce(lambda x, y: x + y, p_STN)
agg = [[e[:] for e in agg] for _ in range(3)]
agg = zip(*agg)
agg = reduce(lambda x, y: x[:] + y[:], agg)
for i in range(len(agg)):
agg[i].append(p_STN[i])
ll = ['normal', 'pert1', 'pert2']
p_STN_name = [ll for _ in range(len(agg) / 3)]
p_STN_name = reduce(lambda x, y: x + y, p_STN_name)
# agg=[[e[:] for e in agg] for _ in range(3)]
# agg=zip(*agg)
# agg=reduce(lambda x,y:x[:]+y[:], agg)
for i in range(len(agg)):
agg[i].append(p_STN_name[i])
#
# M2_rate=[[1.0, 1.1, 1.2] for _ in range(len(agg))]
# M2_rate=reduce(lambda x,y:x+y, M2_rate)
# agg=[[e[:] for e in agg] for _ in range(3)]
# agg=zip(*agg)
# agg=reduce(lambda x,y:x[:]+y[:], agg)
#
# for i in range(len(agg)):
# agg[i].append(M2_rate[i])
# ST_GA_ampa_w=[[0.75,1.] for _ in range(len(agg))]
# ST_GA_ampa_w=reduce(lambda x,y:x+y, ST_GA_ampa_w)
# agg=[[e[:] for e in agg] for _ in range(2)]
# agg=zip(*agg)
# agg=reduce(lambda x,y:x[:]+y[:], agg)
#
# for i in range(len(agg)):
# agg[i].append(ST_GA_ampa_w[i])
EA_rate = [[200., 400., 600.] for _ in range(len(agg))]
EA_rate = reduce(lambda x, y: x + y, EA_rate)
agg = [[e[:] for e in agg] for _ in range(3)]
agg = zip(*agg)
agg = reduce(lambda x, y: x + y, agg)
for i in range(len(agg)):
agg[i].append(EA_rate[i])
i = 0
for a0, a1, a2, a3, a4, name, a5 in agg:
d = {}
misc.dict_update(d, solution['mul'])
# dd={'node':{'M1':{'rate':a3}}}
# dd={'nest':{'ST_GA_ampa':{'weight':a3*0.25}}}
# misc.dict_update(d,dd)
l += [pl(d, '*', **{'name': ''})]
d = {}
misc.dict_update(d, solution['equal'])
if a4:
dd = {'nest': {'ST': a4}}
misc.dict_update(d, dd)
dd = {
'nest': {
'GA_ST_gaba': {
'delay': a2
},
'ST_GA_ampa': {
'delay': a2
},
'ST_GI_ampa': {
'delay': a2
}
}
}
dd = {
'node': {
'CS': {
'rate': float(a0)
},
'EA': {
'rate': a5
}
},
'nest': {
'GI_ST_gaba': {
'weight': a1
},
'ST': {
'beta_I_AMPA_1': f_beta_rm(a3),
'beta_I_NMDA_1': f_beta_rm(a3)
}
}
}
misc.dict_update(d, dd)
s = 'CS_{0}_GPST_{1}_GPSTd_{2}_STbI_{3}_pST_{4}_EAr_{5}'.format(
a0,
str(a1)[0:4],
str(a2)[0:4], a3, name, int(a5))
l[-1] += pl(d, '=', **{'name': s})
i += 1
return l
def get():
l=[]
solution=get_solution_slow_GP_striatum_2()
d0=0.8
f_beta_rm=lambda f: (1-f)/(d0+f*(1-d0))
for a,b in zip([200., 300., 300., 400., 500.],
[a*0.25 for a in [0.75, 0.75, 0.5, 0.5, 0.5]]):
z=1.2
y=0.75
d={}
misc.dict_update(d, solution['mul'])
misc.dict_update(d,{'node':{'CS':{'rate': y}}})
misc.dict_update(d,{'node':{'CF':{'rate': z}}})
misc.dict_update(d,{'nest':{'ST_GA_ampa':{'weight':b}}})
l+=[pl(d, '*', **{'name':''})]
d={}
misc.dict_update(d, solution['equal'])
d['node']['EI']['rate']*=y
d['node']['EA']['rate']=a
misc.dict_update(d,{'nest':{'GI':{'beta_I_GABAA_1': f_beta_rm(2)}}})
l[-1]+=pl(d, '=', **{'name':'all_EIEACS_'+str(a)+'_STGAw_'+str(b)})
return l
def get():
l=[]
solution=get_solution_slow_GP_striatum_2()
for y in numpy.arange(2.,29.,4.):
d={}
misc.dict_update(d, solution['mul'])
l+=[pl(d, '*', **{'name':''})]
d={}
misc.dict_update(d, solution['equal'])
dd={'conn': {'GA_GA_gaba':{'fan_in0': y,'rule':'all-all' },
'GA_GI_gaba':{'fan_in0': 2,'rule':'all-all' },
'GI_GA_gaba':{'fan_in0': 30-y,'rule':'all-all' },
'GI_GI_gaba':{'fan_in0': 28,'rule':'all-all' }}}
misc.dict_update(d, dd)
l[-1]+=pl(d, '=', **{'name':'GAGA_'+str(y)+'_GIGA_'+str(30-y)})
d0=0.8
f_beta_rm=lambda f: (1-f)/(d0+f*(1-d0))
for y in [1.8, 2.0]:
d={}
misc.dict_update(d, solution['mul'])
l+=[pl(d, '*', **{'name':''})]
d={}
misc.dict_update(d, solution['equal'])
d['node']['EI']['rate']*=y
d['node']['EA']['rate']*=y*0.7
misc.dict_update(d,{'nest':{'GI':{'beta_I_GABAA_1': f_beta_rm(2)}}})
l[-1]+=pl(d, '=', **{'name':'mod_EIEA_'+str(y)})
for y, EA_rate in zip(numpy.arange(25,80,25)
numpy.arange(0.9,1.1,0.1)):
d={}
misc.dict_update(d, solution['mul'])
l+=[pl(d, '*', **{'name':''})]
d={}
misc.dict_update(d, solution['equal'])
d['node']['EA']['rate']*=EA_rate
misc.dict_update(d,{'conn':{'M2_GA_gaba':{'lesion': False}}})
misc.dict_update(d,{'conn':{'M2_GA_gaba':{'fan_in0': y}}})
l[-1]+=pl(d, '=', **{'name':'M2GA_'+str(y)+'_EArate_'+str(EA_rate)})
def get():
l=[]
solution, s_mul, s_equal=get_solution()
d0=0.8
f_beta_rm=lambda f: (1-f)/(d0+f*(1-d0))
y=2.5
w=numpy.arange(0.5, 1.2, 0.1)
v=[0.1,0.25, 0.5]
ll=[[v1,v2] for v1 in v for v2 in w]
pp(l)
for x, z in ll:
print x,z
d={}
for keys in s_mul: update(solution, d, keys)
l+=[pl(d, '*', **{'name':''})]
d={}
for keys in s_equal: update(solution, d, keys)
misc.dict_update(d,{'nest':{'ST':{'beta_I_AMPA_1': f_beta_rm(y)}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_NMDA_1': f_beta_rm(y)}}})
misc.dict_update(d,{'nest':{'MS':{'beta_I_GABAA_2': f_beta_rm(x)}}})
for conn in ['M1_M1_gaba', 'M1_M2_gaba','M2_M1_gaba','M2_M2_gaba']:
misc.dict_update(d,{'conn':{conn:{'beta_fan_in': f_beta_rm(x)}}})
misc.dict_update(d,{'nest':{'GA_M1_gaba':{'weight': z}}})
misc.dict_update(d,{'nest':{'GA_M2_gaba':{'weight': z}}})
misc.dict_update(d,{'nest':{'GA_FS_gaba':{'weight': z}}})
d['node']['EA']['rate']*=0.7
l[-1]+=pl(d, '=', **{'name':('mod_GA_str_' + str(z)+'_MS_'+str(x))
})
return l
def get():
l=[]
solution, s_mul, s_equal=get_solution()
d0=0.8
f_beta_rm=lambda f: (1-f)/(d0+f*(1-d0))
d={}
x=2.5
for keys in s_mul: update(solution, d, keys)
l+=[pl(d, '*', **{'name':''})]
d={}
for keys in s_equal: update(solution, d, keys)
misc.dict_update(d,{'nest':{'ST':{'beta_I_AMPA_1': f_beta_rm(x)}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_NMDA_1': f_beta_rm(x)}}})
d['node']['EA']['rate']*=0.7
l[-1]+=pl(d, '=', **{'name':'mod_ST_beta_'+str(x)})
for y in numpy.arange(1,11,1):
d={}
for keys in s_mul: update(solution, d, keys)
l+=[pl(d, '*', **{'name':''})]
d={}
for keys in s_equal: update(solution, d, keys)
misc.dict_update(d,{'nest':{'ST':{'beta_I_AMPA_1': f_beta_rm(x)}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_NMDA_1': f_beta_rm(x)}}})
d['node']['EA']['rate']*=0.7
misc.dict_update(d,{'conn':{'GI_FS_gaba':{'lesion': False}}})
misc.dict_update(d,{'conn':{'GI_FS_gaba':{'fan_in0': y}}})
misc.dict_update(d,{'conn':{'GI_M1_gaba':{'lesion': False}}})
misc.dict_update(d,{'conn':{'GI_M1_gaba':{'fan_in0': y}}})
misc.dict_update(d,{'conn':{'GI_M2_gaba':{'lesion': False}}})
misc.dict_update(d,{'conn':{'GI_M2_gaba':{'fan_in0': y}}})
l[-1]+=pl(d, '=', **{'name':'mod_GI_M2_'+str(y)})
for y, EA_rate in zip(numpy.arange(25,125,25),
numpy.arange(0.9,1.3,0.1)):
d={}
for keys in s_mul: update(solution, d, keys)
l+=[pl(d, '*', **{'name':''})]
d={}
for keys in s_equal: update(solution, d, keys)
misc.dict_update(d,{'nest':{'ST':{'beta_I_AMPA_1': f_beta_rm(x)}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_NMDA_1': f_beta_rm(x)}}})
d['node']['EA']['rate']*=EA_rate
misc.dict_update(d,{'conn':{'M2_GA_gaba':{'lesion': False}}})
misc.dict_update(d,{'conn':{'M2_GA_gaba':{'fan_in0': y}}})
l[-1]+=pl(d, '=', **{'name':'M2GA_'+str(y)+'_EArate_'+str(EA_rate)})
return l
def get():
l=[]
solution=get_solution_slow_GP_striatum_2()
d0=0.8
f_beta_rm=lambda f: (1-f)/(d0+f*(1-d0))
for y in [0.75, 0.8]:
d={}
misc.dict_update(d, solution['mul'])
misc.dict_update(d,{'node':{'CS':{'rate': y}}})
l+=[pl(d, '*', **{'name':''})]
d={}
misc.dict_update(d, solution['equal'])
d['node']['EI']['rate']*=y
d['node']['EA']['rate']*=0.0
misc.dict_update(d,{'nest':{'GI':{'beta_I_GABAA_1': f_beta_rm(2)}}})
l[-1]+=pl(d, '=', **{'name':'all_CSEIEA_'+str(y)})
for z in [1.1,1.2]:
y=0.75
d={}
misc.dict_update(d, solution['mul'])
misc.dict_update(d,{'node':{'CS':{'rate': y}}})
misc.dict_update(d,{'node':{'CF':{'rate': z}}})
l+=[pl(d, '*', **{'name':''})]
d={}
misc.dict_update(d, solution['equal'])
d['node']['EI']['rate']*=y
d['node']['EA']['rate']*=0.0
misc.dict_update(d,{'nest':{'GI':{'beta_I_GABAA_1': f_beta_rm(2)}}})
l[-1]+=pl(d, '=', **{'name':'all_CF_'+str(z)})
for y in numpy.arange(5.,29.,5.):
z=0.8
d={}
misc.dict_update(d, solution['mul'])
misc.dict_update(d,{'node':{'CS':{'rate': z}}})
l+=[pl(d, '*', **{'name':''})]
d={}
misc.dict_update(d, solution['equal'])
dd={'conn': {'GA_GA_gaba':{'fan_in0': y,'rule':'all-all' },
'GA_GI_gaba':{'fan_in0': 2,'rule':'all-all' },
'GI_GA_gaba':{'fan_in0': 30-y,'rule':'all-all' },
'GI_GI_gaba':{'fan_in0': 28,'rule':'all-all' }}}
misc.dict_update(d, dd)
d['node']['EI']['rate']*=z
d['node']['EA']['rate']*=0.0
misc.dict_update(d,{'nest':{'GI':{'beta_I_GABAA_1': f_beta_rm(2)}}})
l[-1]+=pl(d, '=', **{'name':'GAGA_'+str(y)+'_GIGA_'+str(30-y)})
return l
def get():
l=[]
solution=get_solution_slow_GP_striatum_2()
d0=0.8
f_beta_rm=lambda f: (1-f)/(d0+f*(1-d0))
for y in [1.2, 1.3]:
d={}
misc.dict_update(d, solution['mul'])
misc.dict_update(d,{'node':{'CS':{'rate': y}}})
l+=[pl(d, '*', **{'name':''})]
d={}
misc.dict_update(d, solution['equal'])
dd={'conn': {'GA_GA_gaba':{'fan_in0': 20,'rule':'all-all' },
'GA_GI_gaba':{'fan_in0': 2,' rule':'all-all' },
'GI_GA_gaba':{'fan_in0': 10,'rule':'all-all' },
'GI_GI_gaba':{'fan_in0': 28,'rule':'all-all' }}}
misc.dict_update(d, dd)
misc.dict_update(d,{'conn':{'GI_FS_gaba':{'lesion': False}}})
misc.dict_update(d,{'conn':{'GI_FS_gaba':{'fan_in0': 2}}})
misc.dict_update(d,{'conn':{'GI_M1_gaba':{'lesion': False}}})
misc.dict_update(d,{'conn':{'GI_M1_gaba':{'fan_in0': 2}}})
misc.dict_update(d,{'conn':{'GI_M2_gaba':{'lesion': False}}})
misc.dict_update(d,{'conn':{'GI_M2_gaba':{'fan_in0': 2}}})
# d['node']['EA']['rate']*=0.9
# misc.dict_update(d,{'conn':{'M2_GA_gaba':{'lesion': False}}})
# misc.dict_update(d,{'conn':{'M2_GA_gaba':{'fan_in0': 25}}})
d['node']['EI']['rate']*=y*0.9
d['node']['EA']['rate']*=y
# d['node']['CS']['rate']*=y
#
misc.dict_update(d,{'nest':{'GI':{'beta_I_GABAA_1': f_beta_rm(2)}}})
l[-1]+=pl(d, '=', **{'name':'all_EIEA_'+str(y)})
for a,b in zip([1.1, 1.2, 1.7, 2.3, 2.5],
[a*0.25 for a in [0.75, 0.5, 0.25, 0.1, 0.01]]):
y=1.2
d={}
misc.dict_update(d, solution['mul'])
misc.dict_update(d,{'node':{'CS':{'rate': y}}})
misc.dict_update(d,{'nest':{'ST_GA_ampa':{'weight':b}}})
l+=[pl(d, '*', **{'name':''})]
d={}
misc.dict_update(d, solution['equal'])
dd={'conn': {'GA_GA_gaba':{'fan_in0': 20,'rule':'all-all' },
'GA_GI_gaba':{'fan_in0': 2,' rule':'all-all' },
'GI_GA_gaba':{'fan_in0': 10,'rule':'all-all' },
'GI_GI_gaba':{'fan_in0': 28,'rule':'all-all' }}}
misc.dict_update(d, dd)
misc.dict_update(d,{'conn':{'GI_FS_gaba':{'lesion': False}}})
misc.dict_update(d,{'conn':{'GI_FS_gaba':{'fan_in0': 2}}})
misc.dict_update(d,{'conn':{'GI_M1_gaba':{'lesion': False}}})
misc.dict_update(d,{'conn':{'GI_M1_gaba':{'fan_in0': 2}}})
misc.dict_update(d,{'conn':{'GI_M2_gaba':{'lesion': False}}})
misc.dict_update(d,{'conn':{'GI_M2_gaba':{'fan_in0': 2}}})
# d['node']['EA']['rate']*=0.9
# misc.dict_update(d,{'conn':{'M2_GA_gaba':{'lesion': False}}})
# misc.dict_update(d,{'conn':{'M2_GA_gaba':{'fan_in0': 25}}})
d['node']['EI']['rate']*=y*0.9
d['node']['EA']['rate']*=y*a
# d['node']['CS']['rate']*=y
misc.dict_update(d,{'nest':{'GI':{'beta_I_GABAA_1': f_beta_rm(2)}}})
l[-1]+=pl(d, '=', **{'name':'all_EIEACS_'+str(a)+'_STGAw_'+str(b)})
return l
def get():
l=[]
solution, s_mul, s_equal=get_solution_slow_GP_striatum()
d0=0.8
f_beta_rm=lambda f: (1-f)/(d0+f*(1-d0))
for y in numpy.arange(1.0,-0.1,-0.5):
for z in numpy.arange(1.0,-0.1,-0.5):
x=2.5
d={}
for keys in s_mul: update(solution, d, keys)
misc.dict_update(d,{'nest':{'GI_GA_gaba':{'weight':y}}})
misc.dict_update(d,{'nest':{'ST_GA_ampa':{'weight':z}}})
l+=[pl(d, '*', **{'name':''})]
d={}
for keys in s_equal: update(solution, d, keys)
misc.dict_update(d,{'nest':{'ST':{'beta_I_AMPA_1': f_beta_rm(x)}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_NMDA_1': f_beta_rm(x)}}})
d['node']['EA']['rate']*=0.7
l[-1]+=pl(d, '=', **{'name':'GIGA_'+str(y)+'_STGA_'+str(z)})
for y in numpy.arange(1.,6.):
for z in numpy.arange(1.,6.):
x=2.5
d={}
for keys in s_mul: update(solution, d, keys)
l+=[pl(d, '*', **{'name':''})]
d={}
for keys in s_equal: update(solution, d, keys)
misc.dict_update(d,{'nest':{'ST_GA_ampa':{'delay':y}}})
misc.dict_update(d,{'nest':{'ST_GI_ampa':{'delay':y}}})
misc.dict_update(d,{'nest':{'GI_ST_gaba':{'delay':z}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_AMPA_1': f_beta_rm(x)}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_NMDA_1': f_beta_rm(x)}}})
d['node']['EA']['rate']*=0.7
l[-1]+=pl(d, '=', **{'name':'STGPdelay_'+str(y)+'_GPSTdelay_'+str(z)})
for y in numpy.arange(2.5, 21., 2.5):
x=2.5
d={}
for keys in s_mul: update(solution, d, keys)
l+=[pl(d, '*', **{'name':''})]
d={}
for keys in s_equal: update(solution, d, keys)
misc.dict_update(d,{'nest':{'CS_ST_ampa':{'delay':y}}})
misc.dict_update(d,{'nest':{'CS_ST_nmda':{'delay':y}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_AMPA_1': f_beta_rm(x)}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_NMDA_1': f_beta_rm(x)}}})
d['node']['EA']['rate']*=0.7
l[-1]+=pl(d, '=', **{'name':'CSSTdelay_'+str(y)})
for y in numpy.arange(2.5, 21., 2.5):
x=2.5
d={}
for keys in s_mul: update(solution, d, keys)
l+=[pl(d, '*', **{'name':''})]
d={}
for keys in s_equal: update(solution, d, keys)
misc.dict_update(d,{'nest':{'C1_M1_ampa':{'delay':y}}})
misc.dict_update(d,{'nest':{'C1_M1_nmda':{'delay':y}}})
misc.dict_update(d,{'nest':{'C2_M2_ampa':{'delay':y}}})
misc.dict_update(d,{'nest':{'C2_M2_nmda':{'delay':y}}})
misc.dict_update(d,{'nest':{'CF_FS_ampa':{'delay':y}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_AMPA_1': f_beta_rm(x)}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_NMDA_1': f_beta_rm(x)}}})
d['node']['EA']['rate']*=0.7
l[-1]+=pl(d, '=', **{'name':'CSTRdelay_'+str(y)})
for y in numpy.arange(1, 8., 1.):
x=2.5
d={}
for keys in s_mul: update(solution, d, keys)
l+=[pl(d, '*', **{'name':''})]
d={}
for keys in s_equal: update(solution, d, keys)
misc.dict_update(d,{'nest':{'GA_M1_gaba':{'delay':y}}})
misc.dict_update(d,{'nest':{'GA_M2_gaba':{'delay':y}}})
misc.dict_update(d,{'nest':{'GA_FS_gaba':{'delay':y}}})
d['node']['EA']['rate']*=0.7
l[-1]+=pl(d, '=', **{'name':'GASTRdelay_'+str(y)})
return l
def get():
l=[]
solution=get_solution_slow_GP_striatum_2()
d0=0.8
f_beta_rm=lambda f: (1-f)/(d0+f*(1-d0))
for y in [1.1, 1.2, 1.3]:
d={}
misc.dict_update(d, solution['mul'])
misc.dict_update(d,{'node':{'CS':{'rate': y}}})
l+=[pl(d, '*', **{'name':''})]
d={}
misc.dict_update(d, solution['equal'])
d['node']['EI']['rate']*=y*0.9
d['node']['EA']['rate']*=y
misc.dict_update(d,{'nest':{'GI':{'beta_I_GABAA_1': f_beta_rm(2)}}})
l[-1]+=pl(d, '=', **{'name':'all_CSEIEA_'+str(y)})
y=1.2
d={}
misc.dict_update(d, solution['mul'])
misc.dict_update(d,{'node':{'CS':{'rate': y}}})
l+=[pl(d, '*', **{'name':''})]
d={}
misc.dict_update(d, solution['equal'])
d['node']['EI']['rate']*=y*0.9
d['node']['EA']['rate']*=0.0
misc.dict_update(d,{'nest':{'GI':{'beta_I_GABAA_1': f_beta_rm(2)}}})
l[-1]+=pl(d, '=', **{'name':'all_CSEIEA_'+str(y)})
return l
def get():
l = []
solution = get_solution_slow_GP_striatum_2()
d0 = 0.8
f_beta_rm = lambda f: (1 - f) / (d0 + f * (1 - d0))
for y in [1.1, 1.2, 1.3]:
d = {}
misc.dict_update(d, solution['mul'])
misc.dict_update(d, {'node': {'CS': {'rate': y}}})
l += [pl(d, '*', **{'name': ''})]
d = {}
misc.dict_update(d, solution['equal'])
d['node']['EI']['rate'] *= y * 0.9
d['node']['EA']['rate'] *= y
misc.dict_update(d, {'nest': {'GI': {'beta_I_GABAA_1': f_beta_rm(2)}}})
l[-1] += pl(d, '=', **{'name': 'all_CSEIEA_' + str(y)})
y = 1.2
d = {}
misc.dict_update(d, solution['mul'])
misc.dict_update(d, {'node': {'CS': {'rate': y}}})
l += [pl(d, '*', **{'name': ''})]
d = {}
misc.dict_update(d, solution['equal'])
d['node']['EI']['rate'] *= y * 0.9
d['node']['EA']['rate'] *= 0.0
misc.dict_update(d, {'nest': {'GI': {'beta_I_GABAA_1': f_beta_rm(2)}}})
l[-1] += pl(d, '=', **{'name': 'all_CSEIEA_' + str(y)})
return l
def get():
l = []
solution, s_mul, s_equal = get_solution()
d0 = 0.8
f_beta_rm = lambda f: (1 - f) / (d0 + f * (1 - d0))
y = 2.5
w = numpy.arange(0.5, 1.2, 0.1)
v = [0.1, 0.25, 0.5]
ll = [[v1, v2] for v1 in v for v2 in w]
pp(l)
for x, z in ll:
print x, z
d = {}
for keys in s_mul:
update(solution, d, keys)
l += [pl(d, '*', **{'name': ''})]
d = {}
for keys in s_equal:
update(solution, d, keys)
misc.dict_update(d, {'nest': {'ST': {'beta_I_AMPA_1': f_beta_rm(y)}}})
misc.dict_update(d, {'nest': {'ST': {'beta_I_NMDA_1': f_beta_rm(y)}}})
misc.dict_update(d, {'nest': {'MS': {'beta_I_GABAA_2': f_beta_rm(x)}}})
for conn in ['M1_M1_gaba', 'M1_M2_gaba', 'M2_M1_gaba', 'M2_M2_gaba']:
misc.dict_update(d,
{'conn': {
conn: {
'beta_fan_in': f_beta_rm(x)
}
}})
misc.dict_update(d, {'nest': {'GA_M1_gaba': {'weight': z}}})
misc.dict_update(d, {'nest': {'GA_M2_gaba': {'weight': z}}})
misc.dict_update(d, {'nest': {'GA_FS_gaba': {'weight': z}}})
d['node']['EA']['rate'] *= 0.7
l[-1] += pl(d, '=',
**{'name': ('mod_GA_str_' + str(z) + '_MS_' + str(x))})
return l
def get():
l=[]
solution, s_mul, s_equal=get_solution()
d0=0.8
f_beta_rm=lambda f: (1-f)/(d0+f*(1-d0))
y=2.5
v=[1./10., 3./10, 5./10,7./10, 9./10]
for x in v:
d={}
for keys in s_mul: update(solution, d, keys)
misc.dict_update(d,{'conn':{'GA_M1_gaba':{'fan_in0': x}}})
misc.dict_update(d,{'conn':{'GA_M2_gaba':{'fan_in0': x}}})
misc.dict_update(d,{'nest':{'GA_M1_gaba':{'weight': 1./x}}})
misc.dict_update(d,{'nest':{'GA_M2_gaba':{'weight': 1./x}}})
l+=[pl(d, '*', **{'name':('mod_GA_MS_' + str(x))})]
d={}
for keys in s_equal: update(solution, d, keys)
misc.dict_update(d,{'nest':{'ST':{'beta_I_AMPA_1': f_beta_rm(y)}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_NMDA_1': f_beta_rm(y)}}})
d['node']['EA']['rate']*=0.7
l[-1]+=pl(d, '=', **{'name':'' })
for x in v:
d={}
for keys in s_mul: update(solution, d, keys)
misc.dict_update(d,{'conn':{'GA_FS_gaba':{'fan_in0': x}}})
misc.dict_update(d,{'nest':{'GA_FS_gaba':{'weight': 1./x}}})
l+=[pl(d, '*', **{'name':('mod_GA_FS_' + str(x))})]
d={}
for keys in s_equal: update(solution, d, keys)
misc.dict_update(d,{'nest':{'ST':{'beta_I_AMPA_1': f_beta_rm(y)}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_NMDA_1': f_beta_rm(y)}}})
d['node']['EA']['rate']*=0.7
l[-1]+=pl(d, '=', **{'name':'' })
for x in v:
d={}
for keys in s_mul: update(solution, d, keys)
misc.dict_update(d,{'conn':{'GA_FS_gaba':{'fan_in0': x}}})
misc.dict_update(d,{'conn':{'GA_M1_gaba':{'fan_in0': x}}})
misc.dict_update(d,{'conn':{'GA_M2_gaba':{'fan_in0': x}}})
misc.dict_update(d,{'nest':{'GA_M1_gaba':{'weight': 1./x}}})
misc.dict_update(d,{'nest':{'GA_M2_gaba':{'weight': 1./x}}})
misc.dict_update(d,{'nest':{'GA_FS_gaba':{'weight': 1./x}}})
l+=[pl(d, '*', **{'name':('mod_GA_str_' + str(x))})]
d={}
for keys in s_equal: update(solution, d, keys)
misc.dict_update(d,{'nest':{'ST':{'beta_I_AMPA_1': f_beta_rm(y)}}})
misc.dict_update(d,{'nest':{'ST':{'beta_I_NMDA_1': f_beta_rm(y)}}})
d['node']['EA']['rate']*=0.7
l[-1]+=pl(d, '=', **{'name':'' })
return l
misc.dict_update(d, solution['equal'])
d['node']['EA']['rate']*=EA_rate
misc.dict_update(d,{'conn':{'M2_GA_gaba':{'lesion': False}}})
misc.dict_update(d,{'conn':{'M2_GA_gaba':{'fan_in0': y}}})
l[-1]+=pl(d, '=', **{'name':'M2GA_'+str(y)+'_EArate_'+str(EA_rate)})
for y in numpy.arange(2, 5, 2):
d={}
misc.dict_update(d, solution['mul'])
l+=[pl(d, '*', **{'name':''})]
d={}
misc.dict_update(d, solution['equal'])
misc.dict_update(d,{'conn':{'GI_FS_gaba':{'lesion': False}}})
misc.dict_update(d,{'conn':{'GI_FS_gaba':{'fan_in0': y}}})
misc.dict_update(d,{'conn':{'GI_M1_gaba':{'lesion': False}}})
misc.dict_update(d,{'conn':{'GI_M1_gaba':{'fan_in0': y}}})
misc.dict_update(d,{'conn':{'GI_M2_gaba':{'lesion': False}}})
misc.dict_update(d,{'conn':{'GI_M2_gaba':{'fan_in0': y}}})
l[-1]+=pl(d, '=', **{'name':'mod_GI_M2_'+str(y)})
def get():
l = []
solution = get_solution_slow_GP_striatum_2()
d0 = 0.8
f_beta_rm = lambda f: (1 - f) / (d0 + f * (1 - d0))
for a, b in zip([200., 300., 300., 400., 500.],
[a * 0.25 for a in [0.75, 0.75, 0.5, 0.5, 0.5]]):
z = 1.2
y = 0.75
d = {}
misc.dict_update(d, solution['mul'])
misc.dict_update(d, {'node': {'CS': {'rate': y}}})
misc.dict_update(d, {'node': {'CF': {'rate': z}}})
misc.dict_update(d, {'nest': {'ST_GA_ampa': {'weight': b}}})
l += [pl(d, '*', **{'name': ''})]
d = {}
misc.dict_update(d, solution['equal'])
d['node']['EI']['rate'] *= y
d['node']['EA']['rate'] = a
misc.dict_update(d, {'nest': {'GI': {'beta_I_GABAA_1': f_beta_rm(2)}}})
l[-1] += pl(d, '=',
**{'name': 'all_EIEACS_' + str(a) + '_STGAw_' + str(b)})
return l
def get():
l=[]
solution=get_solution_slow_GP_striatum_2()
d0=0.8
f_beta_rm=lambda f: (1-f)/(d0+f*(1-d0))
for z in [1.05,1.1]:
for a,b in zip([900., 1200.0 ],
[a*0.25 for a in [0.75, 0.5]]):
for y in numpy.arange(5.,29.,5.):
# z=0.8
d={}
misc.dict_update(d, solution['mul'])
misc.dict_update(d,{'node':{'CS':{'rate': z}}})
misc.dict_update(d,{'nest':{'ST_GA_ampa':{'weight':b}}})
l+=[pl(d, '*', **{'name':''})]
d={}
misc.dict_update(d, solution['equal'])
dd={'conn': {'GA_GA_gaba':{'fan_in0': y,'rule':'all-all' },
'GA_GI_gaba':{'fan_in0': 2,'rule':'all-all' },
'GI_GA_gaba':{'fan_in0': 30-y,'rule':'all-all' },
'GI_GI_gaba':{'fan_in0': 28,'rule':'all-all' }}}
misc.dict_update(d, dd)
d['node']['EI']['rate']*=z
d['node']['EA']['rate']=a
misc.dict_update(d,{'nest':{'GI':{'beta_I_GABAA_1': f_beta_rm(2)}}})
l[-1]+=pl(d, '=', **{'name':'exc'+str(z)
+'_EIEACS_'+str(a)
+'_STGAw_'+str(b)
+'_GAGA_'+str(y)
+'_GIGA_'+str(30-y)})
return l