def import_hdf_nist_special(pth, filename, dset, output_cls_instance):
"""
Import data from HDF File as specified by NIST-specific settings
Returns
-------
Success : bool
Whether import was successful
"""
print('\n')
import_success = _hdf_import_data(pth, filename, dset, output_cls_instance)
if import_success is False:
raise ValueError('hdf_import_data failed')
return False
_meta_process(_snb(), output_cls_instance)
return True
def import_hdf_nist_special_ooc(pth, filename, dset, output_cls_instance):
"""
Import data from HDF File (OUT-OF-CORE) as specified by NIST-specific settings
Returns
-------
Success : bool
Whether import was successful
"""
print('\n')
try:
fid = lazy5.utils.FidOrFile(lazy5.utils.fullpath(filename,
pth=pth)).fid
output_cls_instance._data = fid[dset]
output_cls_instance.meta = lazy5.inspect.get_attrs_dset(fid, dset)
_meta_process(_snb(), output_cls_instance)
except:
raise ValueError('hdf_import_data failed')
return False
else:
return fid
def import_hdf_nist_special(pth, filename, dset, output_cls_instance):
"""
Import data from HDF File as specified by NIST-specific settings
Returns
-------
Success : bool
Whether import was successful
"""
print('\n')
try:
import_success = _hdf_import_data(pth, filename, dset,
output_cls_instance)
if import_success is None or import_success is False:
raise ValueError('hdf_import_data returned None')
_meta_process(_snb(), output_cls_instance)
except:
print('Something failed in import_hdf_nist_special')
return False
else:
print('\n')
return True
meta = _lazy5.inspect.get_attrs_dset(fid, dname)
else:
data = _np.vstack(
(data, fid[dname][:].astype(dset_dtype_import)))
ret = [data, meta]
else:
raise TypeError('output_cls must be Spectrum, Spectra, or Hsi')
fid.close()
return ret
if __name__ == '__main__': # pragma: no cover
from crikit.io.meta_configs import (special_nist_bcars2 as _snb)
rosetta = _snb()
pth = '../'
filename = 'mP2_w_small.h5'
dset = '/Spectra/Dark_3_5ms_2'
tester = _lazy5.inspect.valid_dsets(pth=pth,
file='fake.h5',
dset_list='fake')
assert not tester
tester = _lazy5.inspect.valid_dsets(pth=pth,
file='fake.h5',
dset_list='fake_dset')
assert not tester
# dset.attrs.create(attr_key,bc_attr_dict[attr_key])
# except:
# print('Could not create attribute')
except:
print('Something went wrong while saving')
else:
print('Saved without issues')
finally:
f_out.close()
if __name__ == '__main__': # pragma: no cover
from crikit.io.meta_configs import (special_nist_bcars2
as _snb)
rosetta = _snb()
pth = '../../../'
filename = 'mP2_w_small.h5'
dset = '/Spectra/Dark_3_5ms_2'
tester = hdf_is_valid_dsets(pth, 'fake.h5','fake')
assert tester == False
tester = hdf_is_valid_dsets(pth, filename,'fake_dset')
assert tester == False
tester = hdf_is_valid_dsets(pth, filename,['fake_dset1','fake_dset2'])
assert tester == False
tester = hdf_is_valid_dsets(pth, filename,dset)