def do_inCites_publications(list,url):
#[employeeID,lastName,firstName,other-authors,title,source-title,starting-page]
global c
global pubdict
members = []
jsonprint = ""
csvprint = "URLTitle,DOI,AuthorList,Year,RepositoryURL\n"
c.write(csvprint)
for pub in list:
item = pub['pub']
# procedure to get the authors
rel = pub['rel']
users = rel['users']
type = item['type']
authors = []
employeeID = ""
lastName = ""
firstName = ""
otherAuthors = ""
i = 0
for author in users:
proprietaryId = author['proprietary-id']
username = author['username']
href = author['href']
authorinfo = cris.parseUser(href,url)
if i == 0:
employeeID = author['id']
lastName = authorinfo['last-name']
firstName = authorinfo['first-name']
else:
otherAuthors = authorinfo['last-name'] + ", " + authorinfo['first-name'] + ";" + otherAuthors
i = i + 1
if otherAuthors <> "":
otherAuthors = otherAuthors[:-1]
# end of procedure to get the authors
records = item['records']
puburl = item['puburl']
repo = item['repo']
id = item['id']
# select best available record (manual, pubmed, wos, woslite)
recordindex = 100
winningrecord = dict()
for record in records:
if int(record['source-id']) < recordindex:
recordindex = int(record['source-id'])
winningrecord = record
try:
year = winningrecord['date']['{http://www.symplectic.co.uk/publications/api}year']
except Exception, err:
year = ""
if repo <> "NONE" and repo <> None and len(repo)>0:
filename = os.path.dirname(__file__) +"/output/pub_" + id + ".rdf"
members.append(filename)
f = open(filename, 'w')
rdfprint = ""
# Preamble
rdfprint = rdfprint + """<?xml version="1.0" encoding="UTF-8"?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:bibo="http://purl.org/ontology/bibo/"
xmlns:sgul="http://data.sgul.ac.uk/ontology/lib/"
xmlns:vivo="http://vivoweb.org/ontology/core#">"""
# General info
rdfprint = rdfprint + """<rdf:Description rdf:about=\""""+puburl+"""\">
<rdf:type rdf:resource="http://purl.org/ontology/bibo/AcademicArticle"/>
<rdf:type rdf:resource="http://purl.org/ontology/bibo/Article"/>
<rdf:type rdf:resource="http://purl.org/ontology/bibo/Document"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Thing"/>
<rdfs:label>"""+winningrecord['title'].encode('utf-8').replace('\n', '').replace('\r', '')+"""</rdfs:label>
<bibo:abstract>"""+winningrecord['abstract'].encode('utf-8').replace('\n', '').replace('\r', '')+"""</bibo:abstract>
<bibo:doi>"""+winningrecord['doi']+"""</bibo:doi>
<bibo:authorList>"""+lastName+","+firstName+";"+otherAuthors+"""</bibo:authorList>
<vivo:dateTime rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">"""+year+"""</vivo:dateTime>
<sgul:repositoryLink>"""+repo+"""</sgul:repositoryLink>
</rdf:Description>"""
csvprint = puburl + "," + winningrecord['title'].encode('utf-8').replace('\n', '').replace('\r', '') + "," + winningrecord['doi'] + "," + lastName+","+firstName+";"+otherAuthors+ "," + year + "," + repo + "\n"
c.write(csvprint)
# Closing and writing RDF
rdfprint = rdfprint + """</rdf:RDF>"""
f.write(rdfprint)
f.close()
# For JSON
thisdict = dict()
thisdict["publication_url"] = puburl
thisdict["title"] = winningrecord['title'].encode('utf-8').replace('\n', '').replace('\r', '')
thisdict["abstract"] = winningrecord['abstract'].encode('utf-8').replace('\n', '').replace('\r', '').replace('<','<').replace('>','>')
thisdict["doi"] = winningrecord['doi']
thisdict["authorList"] = lastName+","+firstName+";"+otherAuthors
thisdict["repository"] = repo
pubdict[puburl] = thisdict
def do_inCites_publications(list,url):
#[employeeID,lastName,firstName,other-authors,title,source-title,starting-page]
for pub in list:
item = pub['pub']
# procedure to get the authors
rel = pub['rel']
users = rel['users']
type = item['type']
authors = []
employeeID = ""
lastName = ""
firstName = ""
otherAuthors = ""
i = 0
for author in users:
proprietaryId = author['proprietary-id']
username = author['username']
href = author['href']
authorinfo = cris.parseUser(href,url)
if i == 0:
employeeID = author['id']
lastName = authorinfo['last-name']
firstName = authorinfo['first-name']
else:
otherAuthors = authorinfo['last-name'] + ", " + authorinfo['first-name'] + ";" + otherAuthors
i = i + 1
if otherAuthors <> "":
otherAuthors = otherAuthors[:-1]
# end of procedure to get the authors
records = item['records']
puburl = item['puburl']
# select best available record (manual, pubmed, wos, woslite)
recordindex = 100
winningrecord = dict()
for record in records:
if int(record['source-id']) < recordindex:
recordindex = int(record['source-id'])
winningrecord = record
# pub contains the whole publication
# winningrecord contains the record we're meant to work on
# rel contains the relationships
# users contain user info from the relationships
# authors contains all the authors
#print winningrecord
try:
year = winningrecord['date']['{http://www.symplectic.co.uk/publications/api}year']
except Exception, err:
year = ""
#print employeeID+","+lastName+","+firstName+",,"+otherAuthors+",,"+winningrecord['title'].encode('utf-8').replace('\n', '').replace('\r', '')+","+winningrecord['journal'].encode('utf-8').replace('\n', '').replace('\r', '')+","+winningrecord['volume']+","+winningrecord['issue']+","+winningrecord['begin-page']+","+winningrecord['issn']+",,,"+year+","+winningrecord['doi'].encode('utf-8')+",,,"
# print "\""+employeeID+"\""+","+"\""+lastName+"\""+","+"\""+firstName+"\""+",,"+"\""+otherAuthors+"\""+",,"+"\""+winningrecord['title'].encode('utf-8').replace('\n', '').replace('\r', '')+"\""+","+"\""+winningrecord['journal'].encode('utf-8').replace('\n', '').replace('\r', '')+","+"\""+winningrecord['volume']+"\""+","+"\""+winningrecord['issue']+"\""+","+"\""+winningrecord['begin-page']+"\""+","+"\""+winningrecord['issn']+"\""+",,,"+"\""+year+"\""+","+"\""+winningrecord['doi'].encode('utf-8')+"\""+",,,"
#print str(len(records))+","+winningrecord['source-id']+","+puburl+","+employeeID+","+lastName+","+firstName+","+winningrecord['title'].encode('utf-8').replace('\n', '').replace('\r', '')+","+winningrecord['journal'].encode('utf-8').replace('\n', '').replace('\r', '')+","+winningrecord['begin-page']+","+year
if (winningrecord['parent_title'].encode('utf-8').replace('\n', '').replace('\r', '') is ""):
print str(len(records))+","+winningrecord['source-id']+","+puburl+","+employeeID+","+lastName+","+firstName+",\""+winningrecord['title'].encode('utf-8').replace('\n', '').replace('\r', '')+"\",\""+winningrecord['journal'].encode('utf-8').replace('\n', '').replace('\r', '')+"\","+winningrecord['begin-page']+","+year+","+type
else:
print str(len(records))+","+winningrecord['source-id']+","+puburl+","+employeeID+","+lastName+","+firstName+",\""+winningrecord['title'].encode('utf-8').replace('\n', '').replace('\r', '')+"\",\""+winningrecord['parent_title'].encode('utf-8').replace('\n', '').replace('\r', '')+"\","+winningrecord['begin-page']+","+year+","+type
