def testParticleCollectorAsModuleListOutput(self):
sim = crp.ModuleList()
sim.add(crp.MaximumTrajectoryLength(3.14))
sim.add(crp.SimplePropagation(0.001, 0.001))
collector = crp.ParticleCollector()
sim.add(collector)
c = crp.Candidate()
sim.run(c)
self.assertAlmostEqual(collector[0].getTrajectoryLength(),
3.14,
places=2)
def testParticleCollectorAsModuleListInput(self):
sim = crp.ModuleList()
sim.add(crp.MaximumTrajectoryLength(3.14))
sim.add(crp.SimplePropagation(0.001, 0.001))
collector = crp.ParticleCollector()
c1 = crp.Candidate()
c2 = crp.Candidate()
collector.process(c1)
collector.process(c2)
sim.run(collector.getContainer())
for c in collector:
self.assertAlmostEqual(c.getTrajectoryLength(), 3.14, places=2)
def test_DiffusionEnergy100PeV(self):
x, y, z = [], [], []
E = 10 * PeV
D = self.Dif.getScale()*6.1e24*(E/(4*GeV))**self.Dif.getAlpha()
L_max = 50 * kpc
std_exp = np.sqrt(2*D*L_max/c_light)
mean_exp = 0.
N = 10**4
maxTra = crpropa.MaximumTrajectoryLength(L_max)
for i in range(N):
c = crpropa.Candidate()
c.current.setId(crpropa.nucleusId(1,1))
c.current.setEnergy(E)
while c.getTrajectoryLength() < L_max:
maxTra.process(c)
self.Dif.process(c)
x.append(c.current.getPosition().x)
y.append(c.current.getPosition().y)
z.append(c.current.getPosition().z)
A2 = Anderson(z)['testStatistic']
self.assertLess(A2, 2.274, msg=self.msg1)
meanX, meanY, meanZ = np.mean(x), np.mean(y), np.mean(z)
stdZ = np.std(z)
# no diffusion in perpendicular direction
self.assertAlmostEqual(meanX, 0.)
self.assertAlmostEqual(meanY, 0.)
# diffusion in parallel direction
# compare the mean and std of the z-positions with expected values
# z_mean = 0. (no advection)
# z_ std = (2*D_parallel*t)^0.5
# Take 4 sigma errors due to limited number of candidates into account
stdOfMeans = std_exp/np.sqrt(N)
stdOfStds = std_exp/np.sqrt(N)/np.sqrt(2.)
self.assertLess(abs((meanZ-mean_exp)/4./stdOfMeans), 1., msg=self.msg1)
self.assertLess(abs((stdZ-std_exp)/4./stdOfStds), 1., msg=self.msg1)
import crpropa
import CRPropaROOTOutput
print("My Simulation\n")
ml = crpropa.ModuleList()
ml.add(crpropa.SimplePropagation(1 * crpropa.parsec, 100 * crpropa.parsec))
ml.add(crpropa.MaximumTrajectoryLength(1000 * crpropa.parsec))
print("+++ List of modules")
print(ml.getDescription())
print("+++ Preparing source")
source = crpropa.Source()
print(source.getDescription())
print("+++ Starting Simulation")
ml.run(source, 1)
print("+++ Done")
# As test, we propagate some particels in a random field with a sheet observer:
# In[2]:
from crpropa import Mpc, nG, EeV
import numpy as np
vgrid = crpropa.VectorGrid(crpropa.Vector3d(0), 128, 1 * Mpc)
crpropa.initTurbulence(vgrid, 1 * nG, 2 * Mpc, 5 * Mpc, -11. / 3.)
BField = crpropa.MagneticFieldGrid(vgrid)
m = crpropa.ModuleList()
m.add(crpropa.PropagationCK(BField, 1e-4, 0.1 * Mpc, 5 * Mpc))
m.add(crpropa.MaximumTrajectoryLength(25 * Mpc))
# Observer
out = crpropa.TextOutput("sheet.txt")
o = crpropa.Observer()
# The Observer feature has to be created outside of the class attribute
# o.add(ObserverPlane(...)) will not work for custom python modules
plo = ObserverPlane(
np.asarray([0., 0, 0]) * Mpc,
np.asarray([0., 1., 0.]) * Mpc,
np.asarray([0., 0., 1.]) * Mpc)
o.add(plo)
o.setDeactivateOnDetection(False)
o.onDetection(out)
m.add(o)
def test_FullTransport(self):
x, y, z = [], [], []
E = 10 * TeV
D = self.DifAdv.getScale()*6.1e24*(E/(4*GeV))**self.DifAdv.getAlpha()
L_max = 50 * kpc
epsilon = 0.1
advSpeed = 1e6
std_exp_x = np.sqrt(2*epsilon*D*L_max/c_light)
std_exp_y = np.sqrt(2*epsilon*D*L_max/c_light)
std_exp_z = np.sqrt(2*D*L_max/c_light)
mean_exp_x = advSpeed * L_max / c_light
mean_exp_y = 0.
mean_exp_z = 0.
N = 10**4
maxTra = crpropa.MaximumTrajectoryLength(L_max)
ConstMagVec = crpropa.Vector3d(0*nG,0*nG,1*nG)
BField = crpropa.UniformMagneticField(ConstMagVec)
ConstAdvVec = crpropa.Vector3d(advSpeed, 0., 0.)
AdvField = crpropa.UniformAdvectionField(ConstAdvVec)
precision = 1e-4
minStep = 1*pc
maxStep = 10*kpc
DifAdv = crpropa.DiffusionSDE(BField, AdvField, precision, minStep, maxStep, epsilon)
for i in range(N):
c = crpropa.Candidate()
c.current.setId(crpropa.nucleusId(1,1))
c.current.setEnergy(E)
while c.getTrajectoryLength() < L_max:
maxTra.process(c)
DifAdv.process(c)
x.append(c.current.getPosition().x)
y.append(c.current.getPosition().y)
z.append(c.current.getPosition().z)
# test for normality
A2 = Anderson(x)['testStatistic']
self.assertLess(A2, 2.274, msg=self.msg1)
A2 = Anderson(y)['testStatistic']
self.assertLess(A2, 2.274, msg=self.msg1)
A2 = Anderson(z)['testStatistic']
self.assertLess(A2, 2.274, msg=self.msg1)
meanX, meanY, meanZ = np.mean(x), np.mean(y), np.mean(z)
stdX, stdY, stdZ = np.std(x), np.std(y), np.std(z)
# diffusion in parallel direction
# compare the mean and std of the z-positions with expected values
# z_mean = 0. (no advection)
# z_ std = (2*D_parallel*t)^0.5
# Take 4 sigma errors due to limited number of candidates into account
stdOfMeans_x = std_exp_x/np.sqrt(N)
stdOfStds_x = std_exp_x/np.sqrt(N)/np.sqrt(2.)
self.assertLess(abs((meanX-mean_exp_x)/4./stdOfMeans_x), 1., msg=self.msg1)
self.assertLess(abs((stdX-std_exp_x)/4./stdOfStds_x), 1., msg=self.msg1)
stdOfMeans_y = std_exp_y/np.sqrt(N)
stdOfStds_y = std_exp_y/np.sqrt(N)/np.sqrt(2.)
self.assertLess(abs((meanY-mean_exp_y)/4./stdOfMeans_y), 1., msg=self.msg1)
self.assertLess(abs((stdY-std_exp_y)/4./stdOfStds_y), 1., msg=self.msg1)
stdOfMeans_z = std_exp_z/np.sqrt(N)
stdOfStds_z = std_exp_z/np.sqrt(N)/np.sqrt(2.)
self.assertLess(abs((meanZ-mean_exp_z)/4./stdOfMeans_z), 1., msg=self.msg1)
self.assertLess(abs((stdZ-std_exp_z)/4./stdOfStds_z), 1., msg=self.msg1)