def test_print_arg(capsys):
test_arg_name = "My argument"
test_arg_val = "My value"
log.print_arg(test_arg_name, test_arg_val)
captured = capsys.readouterr().err
expected = f"[ARG] {test_arg_name}: {test_arg_val}\n"
assert captured == expected
def _print_args(args: argparse.Namespace):
log.print_arg(
"No. worker processes for the categorization",
f"{args.num_proc: ,d}",
)
def _print_args(args: argparse.Namespace):
log.print_arg("CWAS Workspace", args.workspace)
def _print_args(args: argparse.Namespace):
print_arg("Sample information file", args.sample_info_path)
print_arg("Adjustment factor list", args.adj_factor_path)
def _print_args(args: argparse.Namespace):
print_arg("Target VCF file", args.vcf_path)
def _print_args(args: argparse.Namespace):
log.print_arg("No. Processes for this step", args.num_proc)
log.print_arg(
"Force to overwrite the result",
"Y" if args.force_overwrite else "N",
)