def default_traits_view(self):
return View(
VGroup(
VGroup(Item('channel', label="Channel", style="readonly"),
Item('scale'),
Item('huefacet',
editor=ExtendableEnumEditor(
name='handler.previous_conditions_names',
extra_items={"None": ""}),
label="Color\nFacet"),
label="Range Setup View",
show_border=False),
VGroup(Item('subset_list',
show_label=False,
editor=SubsetListEditor(
conditions="context.previous_wi.conditions")),
label="Subset",
show_border=False,
show_labels=False),
Item('context.view_warning',
resizable=True,
visible_when='context.view_warning',
editor=ColorTextEditor(foreground_color="#000000",
background_color="#ffff99")),
Item('context.view_error',
resizable=True,
visible_when='context.view_error',
editor=ColorTextEditor(foreground_color="#000000",
background_color="#ff9191"))))
def default_traits_view(self):
return View(
Item('name', editor=TextEditor(auto_set=False)),
Item('xchannel',
editor=EnumEditor(name='context.previous_wi.channels'),
label="X Channel"),
Item('ychannel',
editor=EnumEditor(name='context.previous_wi.channels'),
label="Y Channel"), Item('xscale', label="X Scale"),
Item('yscale', label="Y Scale"),
VGroup(Item('num_clusters', editor=TextEditor(auto_set=False)),
Item('by',
editor=CheckListEditor(
cols=2, name='handler.previous_conditions_names'),
label='Group\nEstimates\nBy',
style='custom'),
VGroup(Item(
'subset_list',
show_label=False,
editor=SubsetListEditor(
conditions="context.previous_wi.conditions")),
label="Subset",
show_border=False,
show_labels=False),
Item('do_estimate',
editor=ButtonEditor(value=True, label="Estimate!"),
show_label=False),
label="Estimation parameters",
show_border=False), shared_op_traits)
def default_traits_view(self):
return View(VGroup(Item('controls_list',
editor = VerticalListEditor(editor = InstanceEditor(view = self.control_traits_view()),
style = 'custom',
mutable = False),
style = 'custom'),
Item('handler.add_control',
editor = ButtonEditor(value = True,
label = "Add a control")),
Item('handler.remove_control',
editor = ButtonEditor(value = True,
label = "Remove a control")),
label = "Controls",
show_labels = False),
Item('mixture_model',
label = "Use mixture\nmodel?"),
VGroup(Item('subset_list',
show_label = False,
editor = SubsetListEditor(conditions = "context.previous_wi.conditions",
metadata = "context.previous_wi.metadata",
when = "'experiment' not in vars() or not experiment")),
label = "Subset",
show_border = False,
show_labels = False),
Item('do_estimate',
editor = ButtonEditor(value = True,
label = "Estimate!"),
show_label = False),
shared_op_traits)
def default_traits_view(self):
return View(Item("channels",
editor = CheckListEditor(cols = 2,
name = 'context.previous_wi.channels'),
style = 'custom'),
VGroup(
Item('blank_file'),
label = "Autofluorescence"),
VGroup(
Item('bleedthrough_list',
editor = VerticalListEditor(editor = InstanceEditor(view = self.bleedthrough_traits_view()),
style = 'custom',
mutable = False),
style = 'custom'),
label = "Bleedthrough Correction",
show_border = False,
show_labels = False),
VGroup(
Item('beads_name',
editor = EnumEditor(name = 'handler.beads_name_choices'),
label = "Beads",
width = -125),
Item('beads_file'),
Item('beads_unit',
editor = EnumEditor(name = 'handler.beads_units')),
Item('bead_peak_quantile',
label = "Peak\nQuantile"),
Item('bead_brightness_threshold',
label = "Peak\nThreshold "),
Item('bead_brightness_cutoff',
label = "Peak\nCutoff"),
label = "Bead Calibration",
show_border = False),
VGroup(
Item('to_channel',
editor = EnumEditor(name = 'channels')),
Item('mixture_model',
label = "Use mixture\nmodel?"),
label = "Color Translation"),
VGroup(
Item('translation_list',
editor = VerticalListEditor(editor = InstanceEditor(view = self.translation_traits_view()),
style = 'custom',
mutable = False),
style = 'custom'),
show_labels = False),
VGroup(Item('subset_list',
show_label = False,
editor = SubsetListEditor(conditions = "context.previous_wi.conditions",
metadata = "context.previous_wi.metadata",
when = "'experiment' not in vars() or not experiment")),
label = "Subset",
show_border = False,
show_labels = False),
Item('do_estimate',
editor = ButtonEditor(value = True,
label = "Estimate!"),
show_label = False),
shared_op_traits)
def default_traits_view(self):
return View(
VGroup(
VGroup(Item('channel', style='readonly'),
Item('huefacet', style='readonly'),
label="Binning Default Plot",
show_border=False)),
VGroup(Item(
'subset_list',
show_label=False,
editor=SubsetListEditor(
conditions="handler.context.previous_wi.conditions")),
label="Subset",
show_border=False,
show_labels=False),
Item('context.view_warning',
resizable=True,
visible_when='context.view_warning',
editor=ColorTextEditor(foreground_color="#000000",
background_color="#ffff99")),
Item('context.view_error',
resizable=True,
visible_when='context.view_error',
editor=ColorTextEditor(foreground_color="#000000",
background_color="#ff9191")))
def default_traits_view(self):
return View(
VGroup(
VGroup(
Item('xstatistic',
editor=EnumEditor(
name='handler.numeric_statistics_names'),
label="X Statistic"),
Item('xscale', label="X Scale"),
Item('ystatistic',
editor=EnumEditor(
name='handler.numeric_statistics_names'),
label="Y Statistic"),
Item('yscale', label="Y Scale"),
Item('variable',
editor=EnumEditor(name='handler.indices')),
Item('xfacet',
editor=ExtendableEnumEditor(name='handler.indices',
extra_items={"None": ""}),
label="Horizontal\nFacet"),
Item('yfacet',
editor=ExtendableEnumEditor(name='handler.indices',
extra_items={"None": ""}),
label="Vertical\nFacet"),
Item('huefacet',
editor=ExtendableEnumEditor(name='handler.indices',
extra_items={"None": ""}),
label="Color\nFacet"),
Item('huescale', label="Hue\nScale"),
Item('x_error_statistic',
editor=ExtendableEnumEditor(
name='handler.statistics_names',
extra_items={"None": ("", "")}),
label="X Error\nStatistic"),
Item('y_error_statistic',
editor=ExtendableEnumEditor(
name='handler.statistics_names',
extra_items={"None": ("", "")}),
label="Y Error\nStatistic"),
label="Two-Dimensional Statistics Plot",
show_border=False),
VGroup(Item(
'subset_list',
show_label=False,
editor=SubsetListEditor(conditions="handler.levels")),
label="Subset",
show_border=False,
show_labels=False),
Item('context.view_warning',
resizable=True,
visible_when='context.view_warning',
editor=ColorTextEditor(foreground_color="#000000",
background_color="#ffff99")),
Item('context.view_error',
resizable=True,
visible_when='context.view_error',
editor=ColorTextEditor(foreground_color="#000000",
background_color="#ff9191"))))
def default_traits_view(self):
return View(
VGroup(Item('channels_list',
editor=VerticalListEditor(editor=InstanceEditor(
view=self.channel_traits_view()),
style='custom',
mutable=False),
style='custom'),
Item('handler.add_channel',
editor=ButtonEditor(value=True,
label="Add a channel")),
Item('handler.remove_channel',
editor=ButtonEditor(value=True,
label="Remove a channel")),
show_labels=False),
VGroup(Item('xfacet',
editor=ExtendableEnumEditor(
name='handler.conditions_names',
extra_items={"None": ""}),
label="Horizontal\nFacet"),
Item('yfacet',
editor=ExtendableEnumEditor(
name='handler.conditions_names',
extra_items={"None": ""}),
label="Vertical\nFacet"),
Item('huefacet',
editor=ExtendableEnumEditor(
name='handler.conditions_names',
extra_items={"None": ""}),
label="Color\nFacet"),
Item('huescale', label="Color\nScale"),
Item('plotfacet',
editor=ExtendableEnumEditor(
name='handler.conditions_names',
extra_items={"None": ""}),
label="Tab\nFacet"),
label="2D Histogram",
show_border=False),
VGroup(Item(
'subset_list',
show_label=False,
editor=SubsetListEditor(conditions="context.conditions")),
label="Subset",
show_border=False,
show_labels=False),
Item('context.view_warning',
resizable=True,
visible_when='context.view_warning',
editor=ColorTextEditor(foreground_color="#000000",
background_color="#ffff99")),
Item('context.view_error',
resizable=True,
visible_when='context.view_error',
editor=ColorTextEditor(foreground_color="#000000",
background_color="#ff9191")))
def default_traits_view(self):
return View(
VGroup(
VGroup(Heading("WARNING: Very slow!"),
Item('xchannel',
editor=EnumEditor(name='context.channels'),
label="X Channel"),
Item('xscale', label="X Scale"),
Item('ychannel',
editor=EnumEditor(name='context.channels'),
label="Y Channel"),
Item('yscale', label="Y Scale"),
Item('xfacet',
editor=ExtendableEnumEditor(
name='handler.conditions_names',
extra_items={"None": ""}),
label="Horizontal\nFacet"),
Item('yfacet',
editor=ExtendableEnumEditor(
name='handler.conditions_names',
extra_items={"None": ""}),
label="Vertical\nFacet"),
Item('huefacet',
editor=ExtendableEnumEditor(
name='handler.conditions_names',
extra_items={"None": ""}),
label="Color\nFacet"),
Item('huescale', label="Color\nScale"),
Item('plotfacet',
editor=ExtendableEnumEditor(
name='handler.conditions_names',
extra_items={"None": ""}),
label="Tab\nFacet"),
label="2D Kernel Density Estimate",
show_border=False),
VGroup(Item(
'subset_list',
show_label=False,
editor=SubsetListEditor(conditions="context.conditions")),
label="Subset",
show_border=False,
show_labels=False),
Item('context.view_warning',
resizable=True,
visible_when='context.view_warning',
editor=ColorTextEditor(foreground_color="#000000",
background_color="#ffff99")),
Item('context.view_error',
resizable=True,
visible_when='context.view_error',
editor=ColorTextEditor(foreground_color="#000000",
background_color="#ff9191"))))
def default_traits_view(self):
return View(
VGroup(
VGroup(Item('channel',
editor=EnumEditor(name='context.channels'),
label="Channel"),
Item('scale'),
Item('xfacet',
editor=ExtendableEnumEditor(
name='context.conditions_names',
extra_items={"None": ""}),
label="Horizontal\nFacet"),
Item('yfacet',
editor=ExtendableEnumEditor(
name='context.conditions_names',
extra_items={"None": ""}),
label="Vertical\nFacet"),
Item('huefacet',
editor=ExtendableEnumEditor(
name='context.conditions_names',
extra_items={"None": ""}),
label="Color\nFacet"),
Item('huescale', label="Color\nScale"),
Item('plotfacet',
editor=ExtendableEnumEditor(
name='context.conditions_names',
extra_items={"None": ""}),
label="Tab\nFacet"),
label="Histogram Plot",
show_border=False),
VGroup(Item(
'subset_list',
show_label=False,
editor=SubsetListEditor(conditions="context.conditions",
mutable=False)),
label="Subset",
show_border=False,
show_labels=False),
Item('context.view_warning',
resizable=True,
visible_when='context.view_warning',
editor=ColorTextEditor(foreground_color="#000000",
background_color="#ffff99")),
Item('context.view_error',
resizable=True,
visible_when='context.view_error',
editor=ColorTextEditor(foreground_color="#000000",
background_color="#ff9191"))))
def default_traits_view(self):
return View(
VGroup(
VGroup(
Item('statistic',
editor=EnumEditor(name='handler.statistics_names'),
label="Statistic"),
Item('row_facet',
editor=ExtendableEnumEditor(name='handler.indices',
extra_items={"None": ""}),
label="Rows"),
Item('subrow_facet',
editor=ExtendableEnumEditor(name='handler.indices',
extra_items={"None": ""}),
label="Subrows"),
Item('column_facet',
editor=ExtendableEnumEditor(name='handler.indices',
extra_items={"None": ""}),
label="Columns"),
Item('subcolumn_facet',
editor=ExtendableEnumEditor(name='handler.indices',
extra_items={"None": ""}),
label="Subcolumn"),
Item('export',
editor=ButtonEditor(label="Export..."),
enabled_when='result is not None',
show_label=False),
label="Table View",
show_border=False),
VGroup(Item(
'subset_list',
show_label=False,
editor=SubsetListEditor(conditions="handler.levels")),
label="Subset",
show_border=False,
show_labels=False),
Item('context.view_warning',
resizable=True,
visible_when='context.view_warning',
editor=ColorTextEditor(foreground_color="#000000",
background_color="#ffff99")),
Item('context.view_error',
resizable=True,
visible_when='context.view_error',
editor=ColorTextEditor(foreground_color="#000000",
background_color="#ff9191"))))
def default_traits_view(self):
return View(
Item('name', editor=TextEditor(auto_set=False)),
Item('statistic',
editor=EnumEditor(name='handler.previous_statistics_names'),
label="Statistic"),
Item('statistic_name',
editor=EnumEditor(values=sorted(transform_functions.keys())),
label="Function"),
Item('by',
editor=CheckListEditor(cols=2, name='handler.indices'),
label='Group\nBy',
style='custom'),
VGroup(Item('subset_list',
show_label=False,
editor=SubsetListEditor(conditions="handler.levels")),
label="Subset",
show_border=False,
show_labels=False), shared_op_traits)
def default_traits_view(self):
return View(Item('blank_file'),
Item('channels',
editor = CheckListEditor(cols = 2,
name = 'context.previous_wi.channels'),
style = 'custom'),
VGroup(Item('subset_list',
show_label = False,
editor = SubsetListEditor(conditions = "context.previous_wi.conditions",
metadata = "context.previous_wi.metadata",
when = "'experiment' not in vars() or not experiment")),
label = "Subset",
show_border = False,
show_labels = False),
Item('do_estimate',
editor = ButtonEditor(value = True,
label = "Estimate!"),
show_label = False),
shared_op_traits)
def default_traits_view(self):
return View(Item('name',
editor = TextEditor(auto_set = False)),
Item('channel',
editor=EnumEditor(name='context.previous_wi.channels'),
label = "Channel"),
Item('statistic_name',
editor = EnumEditor(values = list(summary_functions.keys())),
label = "Function"),
Item('by',
editor = CheckListEditor(cols = 2,
name = 'handler.previous_conditions_names'),
label = 'Group\nBy',
style = 'custom'),
VGroup(Item('subset_list',
show_label = False,
editor = SubsetListEditor(conditions = "context.previous_wi.conditions")),
label = "Subset",
show_border = False,
show_labels = False),
shared_op_traits)
def default_traits_view(self):
return View(Item('name',
editor = TextEditor(auto_set = False)),
VGroup(Item('channels_list',
editor = VerticalListEditor(editor = InstanceEditor(view = self.channel_traits_view()),
style = 'custom',
mutable = False),
style = 'custom'),
Item('handler.add_channel',
editor = ButtonEditor(value = True,
label = "Add a channel"),
show_label = False),
Item('handler.remove_channel',
editor = ButtonEditor(value = True,
label = "Remove a channel")),
show_labels = False),
VGroup(Item('num_components',
editor = TextEditor(auto_set = False),
label = "Num\nComponents"),
Item('whiten'),
Item('by',
editor = CheckListEditor(cols = 2,
name = 'handler.previous_conditions_names'),
label = 'Group\nEstimates\nBy',
style = 'custom'),
label = "Estimate parameters"),
VGroup(Item('subset_list',
show_label = False,
editor = SubsetListEditor(conditions = "context.previous_wi.conditions",
metadata = "context.previous_wi.metadata",
when = "'experiment' not in vars() or not experiment")),
label = "Subset",
show_border = False,
show_labels = False),
Item('do_estimate',
editor = ButtonEditor(value = True,
label = "Estimate!"),
show_label = False),
shared_op_traits)
