def convert_hdf_to_blockvisibility(f):
""" Convert HDF root to blockvisibility
:param f:
:return:
"""
assert f.attrs[
'ARL_data_model'] == "BlockVisibility", "Not a BlockVisibility"
s = f.attrs['phasecentre_coords'].split()
ss = [float(s[0]), float(s[1])] * u.deg
phasecentre = SkyCoord(ra=ss[0],
dec=ss[1],
frame=f.attrs['phasecentre_frame'])
polarisation_frame = PolarisationFrame(f.attrs['polarisation_frame'])
frequency = f.attrs['frequency']
channel_bandwidth = f.attrs['channel_bandwidth']
data = numpy.array(f['data'])
source = f.attrs['source']
meta = ast.literal_eval(f.attrs['meta'])
vis = BlockVisibility(data=data,
polarisation_frame=polarisation_frame,
phasecentre=phasecentre,
frequency=frequency,
channel_bandwidth=channel_bandwidth,
source=source,
meta=meta)
vis.configuration = convert_configuration_from_hdf(f)
return vis
def create_blockvisibility(config: Configuration,
times: numpy.array,
frequency: numpy.array,
phasecentre: SkyCoord,
weight: float = 1.0,
polarisation_frame: PolarisationFrame = None,
integration_time=1.0,
channel_bandwidth=1e6,
zerow=False,
**kwargs) -> BlockVisibility:
""" Create a BlockVisibility from Configuration, hour angles, and direction of source
Note that we keep track of the integration time for BDA purposes
:param config: Configuration of antennas
:param times: hour angles in radians
:param frequency: frequencies (Hz] [nchan]
:param weight: weight of a single sample
:param phasecentre: phasecentre of observation
:param channel_bandwidth: channel bandwidths: (Hz] [nchan]
:param integration_time: Integration time ('auto' or value in s)
:param polarisation_frame:
:return: BlockVisibility
"""
assert phasecentre is not None, "Must specify phase centre"
if polarisation_frame is None:
polarisation_frame = correlate_polarisation(config.receptor_frame)
nch = len(frequency)
ants_xyz = config.data['xyz']
nants = len(config.data['names'])
ntimes = len(times)
npol = polarisation_frame.npol
visshape = [ntimes, nants, nants, nch, npol]
rvis = numpy.zeros(visshape, dtype='complex')
rweight = weight * numpy.ones(visshape)
rtimes = numpy.zeros([ntimes])
ruvw = numpy.zeros([ntimes, nants, nants, 3])
# Do each hour angle in turn
for iha, ha in enumerate(times):
# Calculate the positions of the antennas as seen for this hour angle
# and declination
ant_pos = xyz_to_uvw(ants_xyz, ha, phasecentre.dec.rad)
rtimes[iha] = ha * 43200.0 / numpy.pi
# Loop over all pairs of antennas. Note that a2>a1
for a1 in range(nants):
for a2 in range(a1 + 1, nants):
ruvw[iha, a2, a1, :] = (ant_pos[a2, :] - ant_pos[a1, :])
ruvw[iha, a1, a2, :] = (ant_pos[a1, :] - ant_pos[a2, :])
rintegration_time = numpy.full_like(rtimes, integration_time)
rchannel_bandwidth = numpy.full_like(frequency, channel_bandwidth)
if zerow:
ruvw[..., 2] = 0.0
vis = BlockVisibility(uvw=ruvw,
time=rtimes,
frequency=frequency,
vis=rvis,
weight=rweight,
integration_time=rintegration_time,
channel_bandwidth=rchannel_bandwidth,
polarisation_frame=polarisation_frame)
vis.phasecentre = phasecentre
vis.configuration = config
log.info("create_blockvisibility: %s" % (vis_summary(vis)))
assert isinstance(
vis, BlockVisibility), "vis is not a BlockVisibility: %r" % vis
return vis
def create_blockvisibility(config: Configuration,
times: numpy.array,
frequency: numpy.array,
phasecentre: SkyCoord,
weight: float = 1.0,
polarisation_frame: PolarisationFrame = None,
integration_time=1.0,
channel_bandwidth=1e6,
zerow=False,
elevation_limit=None,
source='unknown',
meta=None,
**kwargs) -> BlockVisibility:
""" Create a BlockVisibility from Configuration, hour angles, and direction of source
Note that we keep track of the integration time for BDA purposes
:param config: Configuration of antennas
:param times: hour angles in radians
:param frequency: frequencies (Hz] [nchan]
:param weight: weight of a single sample
:param phasecentre: phasecentre of observation
:param channel_bandwidth: channel bandwidths: (Hz] [nchan]
:param integration_time: Integration time ('auto' or value in s)
:param polarisation_frame:
:return: BlockVisibility
"""
assert phasecentre is not None, "Must specify phase centre"
if polarisation_frame is None:
polarisation_frame = correlate_polarisation(config.receptor_frame)
latitude = config.location.geodetic[1].to('rad').value
nch = len(frequency)
ants_xyz = config.data['xyz']
nants = len(config.data['names'])
ntimes = 0
n_flagged = 0
for iha, ha in enumerate(times):
# Calculate the positions of the antennas as seen for this hour angle
# and declination
_, elevation = hadec_to_azel(ha, phasecentre.dec.rad, latitude)
if elevation_limit is None or (elevation > elevation_limit):
ntimes +=1
else:
n_flagged += 1
assert ntimes > 0, "No unflagged points"
if elevation_limit is not None:
log.info('create_visibility: flagged %d/%d times below elevation limit %f (rad)' %
(n_flagged, ntimes, elevation_limit))
else:
log.info('create_visibility: created %d times' % (ntimes))
npol = polarisation_frame.npol
visshape = [ntimes, nants, nants, nch, npol]
rvis = numpy.zeros(visshape, dtype='complex')
rweight = weight * numpy.ones(visshape)
rimaging_weight = numpy.ones(visshape)
rtimes = numpy.zeros([ntimes])
ruvw = numpy.zeros([ntimes, nants, nants, 3])
# Do each hour angle in turn
itime = 0
for iha, ha in enumerate(times):
# Calculate the positions of the antennas as seen for this hour angle
# and declination
ant_pos = xyz_to_uvw(ants_xyz, ha, phasecentre.dec.rad)
_, elevation = hadec_to_azel(ha, phasecentre.dec.rad, latitude)
if elevation_limit is None or (elevation > elevation_limit):
rtimes[itime] = ha * 43200.0 / numpy.pi
rweight[itime, ...] = 1.0
# Loop over all pairs of antennas. Note that a2>a1
for a1 in range(nants):
for a2 in range(a1 + 1, nants):
ruvw[itime, a2, a1, :] = (ant_pos[a2, :] - ant_pos[a1, :])
ruvw[itime, a1, a2, :] = (ant_pos[a1, :] - ant_pos[a2, :])
itime += 1
rintegration_time = numpy.full_like(rtimes, integration_time)
rchannel_bandwidth = channel_bandwidth
if zerow:
ruvw[..., 2] = 0.0
vis = BlockVisibility(uvw=ruvw, time=rtimes, frequency=frequency, vis=rvis, weight=rweight,
imaging_weight=rimaging_weight,
integration_time=rintegration_time, channel_bandwidth=rchannel_bandwidth,
polarisation_frame=polarisation_frame, source=source, meta=meta)
vis.phasecentre = phasecentre
vis.configuration = config
log.info("create_blockvisibility: %s" % (vis_summary(vis)))
assert isinstance(vis, BlockVisibility), "vis is not a BlockVisibility: %r" % vis
return vis