def main(filename):
settings = config.read_config(namespace="_REACTOR")
jobstore = PipelineJobStore(settings.mongodb)
jobdef = json.load(open(filename, 'r'))
resp = jobstore.create(jobdef)
if resp is not None:
print('Loaded job {}'.format(resp['uuid']))
def test_job_list_job_dir(mongodb_settings, agave):
# The listed path is set up for test_agavehelpers and the job_uuid is the
# from data/tests/pipelinejob/tacbobot.json
job_uuid = '107b93f3-1eae-5e79-8a18-0a480f8aa3a5'
base = PipelineJobStore(
mongodb_settings, agave=agave)
dirlist = base.list_job_archive_path(job_uuid, recurse=True)
assert '/sample/tacc-cloud/agavehelpers/upload/transcriptic/hello.txt' in dirlist
def test_job_fsm_state_png(mongodb_settings, env_localonly):
try:
import pygraphviz
base = PipelineJobStore(mongodb_settings)
for data_struct in pipelinejob.get_jobs():
graf = base.fsm_state_png(data_struct['uuid'])
# This is the signature of PNG - \x89PNG
assert 'iVBOR' in graf.decode('utf-8')
except ModuleNotFoundError:
pass
def test_job_agaveclient(mongodb_settings, agave):
base = PipelineJobStore(
mongodb_settings, agave=agave)
assert getattr(base, '_helper') is not None
def test_job_handle_event_wrong_uuid(mongodb_settings, env_localonly):
base = PipelineJobStore(mongodb_settings)
for data_struct in pipelinejob.get_events_wrong_uuid():
with pytest.raises(exceptions.UnknownJob):
base.handle(data_struct['data'])
def test_job_create(mongodb_settings, env_localonly):
base = PipelineJobStore(mongodb_settings)
for data_struct in pipelinejob.get_jobs():
resp = base.create(data_struct['data'])
assert resp['uuid'] == data_struct['uuid']
def test_job_handle_event_ok(mongodb_settings, env_localonly):
base = PipelineJobStore(mongodb_settings)
for data_struct in pipelinejob.get_events():
resp = base.handle(data_struct['data'])
assert resp['uuid'] == data_struct['uuid']
def test_job_name(mongodb_settings):
base = PipelineJobStore(mongodb_settings)
assert base.name == 'jobs'
def test_job_uuid_tytpe(mongodb_settings):
base = PipelineJobStore(mongodb_settings)
assert base.get_uuid_type() == 'pipelinejob'
def test_job_schema(mongodb_settings):
base = PipelineJobStore(mongodb_settings)
assert isinstance(base.schema, dict)
def test_job_db_list_collection_names(mongodb_settings):
base = PipelineJobStore(mongodb_settings)
assert base.db.list_collection_names() is not None
def test_job_db_heritable_schema(mongodb_settings):
base = PipelineJobStore(mongodb_settings)
assert 'archive_path' in base.get_indexes()
# exclude via NEVER_INDEX_FIELDS
assert 'data' not in base.get_indexes()
def test_job_delete(mongodb_settings):
base = PipelineJobStore(mongodb_settings)
for data_struct in pipelinejob.get_jobs():
resp = base.delete_document(data_struct['uuid'], force=True)
assert resp.raw_result == {'n': 1, 'ok': 1.0}
def test_job_db_init(mongodb_settings):
base = PipelineJobStore(mongodb_settings)
assert base is not None