def keras_train(): # TODO custom loop...
tabnet_add_dense = models.tabnet_model()
train_dataset = dataset.make_dataset('train_1.csv', config.COLUMNS, config.BATCH_SIZE,
onehot=True,
shuffle=True,
train=True) # MapDataset (512, 676)
validation_dataset = dataset.make_dataset('validation_1.csv', config.COLUMNS, config.BATCH_SIZE,
onehot=True,
shuffle=True,
train=True) # MapDataset (512, 676)
tensorboard_callback = tf.keras.callbacks.TensorBoard(log_dir="./logs")
dt_value = datetime.datetime.now()
filename = 'checkpoint/checkpoint-epoch-{epoch:04d}.ckpt' # TODO F1 score를 넣지는 못할까?
checkpoint = ModelCheckpoint(filename, # file명을 지정합니다
verbose=1,
period=1,
save_weights_only=True
)
tabnet_add_dense.compile(
loss=focal_loss(),
#loss=tf.keras.losses.BinaryCrossentropy(from_logits=False),
optimizer=optimizer,
metrics=['accuracy', metrics.f1_score]
)
tabnet_add_dense.load_weights("checkpoint/checkpoint-epoch-0017.ckpt")
tabnet_add_dense.fit(train_dataset, validation_data=validation_dataset,
epochs=100000, verbose=1,
callbacks=[tensorboard_callback, checkpoint],
steps_per_epoch=200,
validation_steps=3)
return tabnet_add_dense
def main(*args):
path, csv, test_csv, test_labels, identifier, infer, model_name, result_dir, sub_fn_path, load, exp_name = args
config = global_config[exp_name]
config['path'] = path
config['csv'] = csv
config['test_csv'] = test_csv
config['test_labels'] = test_labels
config['model_name'] = model_name
config['result_dir'] = result_dir
config['identifier'] = identifier
if infer:
vocab, trn_ds, vld_ds, _, emb_matrix = make_dataset(config)
trn_dl, vld_dl, _ = make_iterator(config, vocab, trn_ds, vld_ds, _)
config['vocab_size'] = len(vocab.itos)
config['pad_idx'] = vocab.stoi[PAD_TOKEN]
model = make_model(config, emb_matrix)
# load model from disk from previous iteration and just
if load:
print(
'Loading model from disk from {}'.format(config['result_dir'] +
config['model_name'] +
'.pth'))
model_dict = load_model(config['result_dir'] +
config['model_name'] + '.pth')
model = model.load_state_dict(model_dict)
else:
model = learn(model, trn_dl, vld_dl, vocab, config)
else:
vocab, trn_ds, _, tst_ds, emb_matrix = make_dataset(config)
trn_dl, _, tst_dl = make_iterator(config, vocab, trn_ds, _, tst_ds)
config['vocab_size'] = len(vocab.itos)
config['emb_matrix'] = emb_matrix
config['pad_idx'] = vocab.stoi[PAD_TOKEN]
model = make_model(config, emb_matrix)
if load:
print(
'Loading model from disk from {}'.format(config['result_dir'] +
config['model_name'] +
'_full.pth'))
model_dict = load_model(config['result_dir'] +
config['model_name'] + '_full.pth')
model = model.load_state_dict(model_dict)
else:
model = learn(model, trn_dl, _, vocab, config)
test_labels = read_csv(config['test_labels'])
_ = predictions(model, tst_dl, None, test_labels, sub_fn_path)
def make_model(conn, uid, ptype, epochs, batch, learning_rate, project,
classes):
#retriveing data after Image augmentation
message_to_send = "Loading Dataset...".encode("UTF-8")
conn.send(len(message_to_send).to_bytes(2, byteorder='big'))
conn.send(message_to_send)
data, labels = make_dataset(uid, ptype, project, classes)
data = np.array(data)
#one-hot encoding
labels = pd.Series(labels)
labels = pd.get_dummies(labels).values
x_train, x_test, y_train, y_test = train_test_split(data,
labels,
test_size=0.2,
random_state=42)
message_to_send = "Training Model...".encode("UTF-8")
conn.send(len(message_to_send).to_bytes(2, byteorder='big'))
conn.send(message_to_send)
CNN(conn, x_train, x_test, y_train, y_test, int(epochs), int(batch),
float(learning_rate), len(classes), project, uid, ptype)
def make_data_loader(data_dir, dataset_type, plane, device=None, shuffle=False):
if device is None:
device = 'cuda' if torch.cuda.is_available() else 'cpu'
dataset = make_dataset(data_dir, dataset_type, plane, device=device)
data_loader = DataLoader(dataset, batch_size=1, shuffle=shuffle)
return data_loader
def main():
options = parse_args()
N_train = options.n_train
N_valid = options.n_valid
D_in = options.n_input
D_out = options.n_output
epochs = options.n_epoch
batch_size = options.n_batch
n_sampling_combs = options.n_sampling
X_data, X_valid, y_data, y_valid = make_dataset(N_train, N_valid, D_in)
net = Net(D_in, D_out)
opt = optim.Adam(net.parameters())
for epoch in range(1, epochs + 1):
index = torch.randperm(N_train)
X_train = X_data[index]
y_train = y_data[index]
for cur_batch in range(0, N_train, batch_size):
X_batch = X_train[cur_batch:cur_batch + batch_size]
y_batch = y_train[cur_batch:cur_batch + batch_size]
opt.zero_grad()
batch_loss = torch.zeros(1)
if X_batch is not None:
preds = net(X_batch)
for _ in range(n_sampling_combs):
i, j = np.random.choice(range(preds.shape[0]), 2)
s_i = preds[i]
s_j = preds[j]
if y_batch[i] > y_batch[j]:
S_ij = 1
elif y_batch[i] == y_batch[j]:
S_ij = 0
else:
S_ij = -1
loss = pairwise_loss(s_i, s_j, S_ij)
batch_loss += loss
batch_loss.backward(retain_graph=True)
opt.step()
with torch.no_grad():
valid_preds = net(X_valid)
valid_swapped_pairs = swapped_pairs(valid_preds, y_valid)
print(
f"epoch: {epoch} valid swapped pairs: {valid_swapped_pairs}/{N_valid*(N_valid-1)//2}"
)
print('DONE')
def get_data(i):
import dataset
imgs = dataset.make_dataset(r"E:\360Downloads\dataset\fingerprint\val")
imgx = []
imgy = []
for img in imgs:
imgx.append(img[0])
imgy.append(img[1])
return imgx[i], imgy[i]
def get_data(i):
import dataset
imgs = dataset.make_dataset(r"D:\project\data_sets\liver\val")
imgx = []
imgy = []
for img in imgs:
imgx.append(img[0])
imgy.append(img[1])
return imgx[i], imgy[i]
def resize(root, num):
folderA = os.path.join(root, 'target')
folderB = os.path.join(root, 'example')
folderA = make_dataset(folderA)
folderB = make_dataset(folderB)
os.makedirs(os.path.join(root, 'target_resize'), exist_ok=True)
os.makedirs(os.path.join(root, 'example_resize'), exist_ok=True)
for i in range(num):
if i % 100 == 0:
print(i)
imgA = cv2.imread(folderA[i])
imgB = cv2.imread(folderB[i])
imgA = cv2.resize(imgA, (128, 128))
imgB = cv2.resize(imgB, (128, 128))
cv2.imwrite(folderA[i].replace('target', 'target_resize'), imgA)
cv2.imwrite(folderB[i].replace('example', 'example_resize'), imgB)
def get_data(i):
import dataset
imgs = dataset.make_dataset(
r"/Users/apple/Desktop/FYPtest_2288970/data/val")
imgx = []
imgy = []
for img in imgs:
imgx.append(img[0])
imgy.append(img[1])
return imgx[i], imgy[i]
def get_data(i):
import dataset
imgs = dataset.make_dataset(
r"H:\BaiduNetdisk\BaiduDownload\u_net_liver-master\data\val")
imgx = []
imgy = []
for img in imgs:
imgx.append(img[0])
imgy.append(img[1])
return imgx[i], imgy[i]
def main(options):
seed = options.seed
torch.manual_seed(seed)
np.random.seed(seed)
torch.cuda.manual_seed(seed)
torch.backends.cudnn.enabled = True
torch.backends.cudnn.benchmark = True
frames, targets = dataset.make_dataset()
trainer.train_net(frames, targets)
def __init__(self):
# initializing the weights here with Xavier initialisation
# (by multiplying with 1/sqrt(n)).
self.weights = torch.randn(784, 10) / math.sqrt(784)
self.weights.requires_grad_()
self.bias = torch.zeros(10, requires_grad=True)
self.bs = 64
(self.x_train, self.y_train, self.x_valid,
self.y_valid) = dataset.make_dataset()
self.n, self.c = self.x_train.shape
def main(options):
seed = options.seed
torch.manual_seed(seed)
np.random.seed(seed)
torch.cuda.manual_seed(seed)
torch.backends.cudnn.enabled = True
torch.backends.cudnn.benchmark = True
d = options.dim
n = options.num_samples
x, y = dataset.make_dataset(d, n)
trainer.train_net(x, y)
def calculate_probability(config):
model = models.tabnet_model()
model.load_weights(config.CHCK_PATH)
test_dataset = dataset.make_dataset(config.TEST_DIR,
config.COLUMNS,
config.TEST_BATCH_SIZE,
onehot=True,
train=False)
# test_dataset = dataset.make_dataset(config.TEST_DIR, config.COLUMNS, config.TEST_BATCH_SIZE, onehot=False, train=False)
probs = np.empty((1, 1))
for num, chunk in enumerate(test_dataset):
print(f"Process batch: {num + 1}") # to 48
prob = model(chunk).numpy()
probs = np.append(probs, prob, axis=0)
return probs
def train_rpn(**kwargs):
transformed_dataset = make_dataset(**kwargs)
dataloader = DataLoader(transformed_dataset,
batch_size=batch_size,
shuffle=True,
num_workers=4)
net = build_rpn(pretrained=True)
optimizer = optim.SGD(
[param for param in net.parameters() if param.requires_grad],
lr=rpn_learning_rate)
scheduler = optim.lr_scheduler.MultiStepLR(optimizer,
milestones=[60000],
gamma=0.1)
criterion = criterion = RPNLoss()
iteration = 0
rpn_epochs = rpn_iterations // len(transformed_dataset)
print("Total number of epoch is {}".format(rpn_epochs))
for epoch in range(rpn_epochs):
running_loss = 0.0
for i, data in enumerate(dataloader, 0):
scheduler.step()
# get the inputs
inputs, labels = data
# Extends the labels with the image size
labels["size"] = inputs.size()[2:]
# zero the parameter gradients
optimizer.zero_grad()
# forward + backward + optimize
outputs = net(inputs)
loss = criterion(outputs, labels)
loss.backward()
optimizer.step()
# print statistics
running_loss += loss.item()
if i % 2 == 1:
#if i % 2000 == 1999: # print every 2000 mini-batches
print('[%d, %5d] loss: %.3f' %
(epoch + 1, i + 1, running_loss))
running_loss = 0.0
iteration += 1
def main(options):
seed = options.seed
torch.manual_seed(seed)
np.random.seed(seed)
torch.cuda.manual_seed(seed)
net = network.Net()
d = torch.load('trained_cnn_model.pth')
net.load_state_dict(d['state_dict'])
net.double()
net.cuda()
train_frames, _ = dataset.make_dataset()
frames, _ = dataset.make_test_dataset()
count = 0
#"""
for f in train_frames:
f = deepcopy(f.numpy())
J = fast_jacobian(net, f, 3 * SIZE * SIZE)
J = J.view(-1, 3 * SIZE * SIZE)
J = J.cpu().data.numpy()
s, _ = eigs(J, k=1, tol=1e-3)
top = np.abs(s)
print(top)
if top < 1:
count += 1
del J
print("Attractors: ", count)
#"""
#"""
avg_error = 0
for f in frames:
f = deepcopy(f.numpy())
count += 1
error = iterate(net, f)
#print(error)
avg_error += error
print(count)
print("AVERAGE ERROR: ", avg_error / count)
def train(config):
basemodel_name = config["basemodel"]
framework = config["framework"]
lr = config["lr"]
momentum = config["momentum"]
weight_decay = config["weight_decay"]
train_batch_size = config["train_bs"]
val_batch_size = config["val_bs"]
data_loader, data_loader_test, num_classes = ds.make_dataset(IMAGES,
ANNOS,
train_batch_size=train_batch_size,
val_batch_size=val_batch_size,
train_fraction=0.7)
basemodel = bm.fetch_basemodel(basemodel_name, framework)
model = fm.set_basemodel_in_framework(basemodel, framework, num_classes)
# some pipeline configs (put these into the pipeline module )
device = torch.device('cuda') if torch.cuda.is_available() else torch.device('cpu')
model.to(device)
if framework == "FasterRCNN":
pipeline = pp.PipelineFasterRCNN(num_epochs=10,
model=model,
lr=lr, momentum=momentum, weight_decay=weight_decay,
data_loader=data_loader,
data_loader_test=data_loader_test,
device=device,
print_freq=1)
elif framework == "SSD":
pipeline = pp.PipelineSSD(num_epochs=10,
model=model,
lr=lr, momentum=momentum, weight_decay=weight_decay,
data_loader=data_loader,
data_loader_test=data_loader_test,
device=device,
print_freq=1)
pipeline.train()
def test_rpn_training(**kwargs):
transformed_dataset = make_dataset(**kwargs)
dataloader = DataLoader(transformed_dataset,
batch_size=batch_size,
shuffle=False,
num_workers=4)
net = build_rpn(pretrained=True)
optimizer = optim.SGD(
[param for param in net.parameters() if param.requires_grad],
lr=rpn_learning_rate)
criterion = RPNLoss()
rpn_epochs = rpn_iterations // len(transformed_dataset)
data = next(iter(dataloader))
print("Total number of epoch is {}".format(rpn_epochs))
for epoch in range(rpn_epochs):
running_loss = 0.0
# get the inputs
inputs, labels = data
# Extends the labels with the image size
labels["size"] = inputs.size()[2:]
# zero the parameter gradients
optimizer.zero_grad()
# forward + backward + optimize
outputs = net(inputs)
loss = criterion(outputs, labels)
loss.backward()
optimizer.step()
# print statistics
running_loss += loss.item()
print('[%d, %5d] loss: %.3f' %
(epoch + 1, epoch + 1, running_loss / 2000))
running_loss = 0.0
def main():
max_iter_step = 60000
labeledset = make_dataset(txs, tys)
trainset = make_dataset(trainx, trainy)
testset = make_dataset(testx, testy)
with tf.device(device):
real_data, real_label, unlabeled_data, y, z, opt_c, opt_e_z, opt_e_y, opt_g, fake_x, c_loss, e_loss_z, e_loss_y, g_loss, true_y = build_graph(
)
merged_all = tf.summary.merge_all()
saver = tf.train.Saver()
config = tf.ConfigProto(allow_soft_placement=True,
log_device_placement=False)
config.gpu_options.allow_growth = False
config.gpu_options.per_process_gpu_memory_fraction = 0.95
with tf.Session(config=config) as sess:
def next_y():
return np.random.multinomial(1, [1 / 10.] * 10, size=batch_size)
def next_z():
return np.random.normal(0, 1,
[batch_size, z_dim]).astype(np.float32)
sess.run(tf.global_variables_initializer())
summary_writer = tf.summary.FileWriter(log_dir, sess.graph)
print("Training semi-supervised wgan...")
for i in range(max_iter_step):
citers = Citers
for j in range(citers):
unlabeled_img, _ = trainset.next_batch(batch_size)
if i % 100 == 99 and j == 0:
train_img, train_label = labeledset.next_batch(batch_size)
run_options = tf.RunOptions(
trace_level=tf.RunOptions.FULL_TRACE)
run_metadata = tf.RunMetadata()
_, merged, loss_c_ = sess.run(
[opt_c, merged_all, c_loss],
feed_dict={
real_data: train_img,
real_label: train_label,
y: next_y(),
z: next_z(),
unlabeled_data: unlabeled_img
},
options=run_options,
run_metadata=run_metadata)
summary_writer.add_summary(merged, i)
summary_writer.add_run_metadata(
run_metadata, 'critic_metadata {}'.format(i), i)
else:
_ = sess.run([opt_c],
feed_dict={
unlabeled_data: unlabeled_img,
y: next_y(),
z: next_z()
})
train_img, train_label = labeledset.next_batch(batch_size)
unlabeled_img, _ = trainset.next_batch(batch_size)
bz = next_z()
by = next_y()
if i % 100 == 99:
_, _, _, merged, loss_e_y_, loss_e_z_, loss_g_ = sess.run(
[
opt_e_y, opt_e_z, opt_g, merged_all, e_loss_y,
e_loss_z, g_loss
],
feed_dict={
real_data: train_img,
real_label: train_label,
y: by,
z: bz,
unlabeled_data: unlabeled_img
},
options=run_options,
run_metadata=run_metadata)
summary_writer.add_summary(merged, i)
summary_writer.add_run_metadata(
run_metadata,
'generator_and_encoder_metadata {}'.format(i), i)
else:
_, _, _ = sess.run(
[opt_e_y, opt_e_z, opt_g],
feed_dict={
real_data: train_img,
real_label: train_label,
y: by,
z: bz,
unlabeled_data: unlabeled_img
})
if i % 100 == 99:
print(
"Training ite %d, c_loss: %f, e_loss_z: %f, e_loss_y: %f, g_loss: %f"
% (i, loss_c_, loss_e_z_, loss_e_y_, loss_g_))
batch_y = []
batch_z = []
tmp = np.random.normal(0, 1, [10, z_dim]).astype(np.float32)
for j in range(10):
batch_z.append(tmp)
tmpy = np.zeros((10, 10))
tmpy[:, j] = 1
batch_y.append(tmpy)
batch_z = np.concatenate(batch_z, 0)
batch_y = np.concatenate(batch_y, 0)
bx = sess.run(fake_x, feed_dict={y: batch_y, z: batch_z})
fig = plt.figure(image_dir + '.semi-wgan')
grid_show(fig, (bx + 1) / 2, [32, 32, channel])
if not os.path.exists('./logs/{}/{}'.format(
image_dir, args.logdir)):
os.makedirs('./logs/{}/{}'.format(image_dir, args.logdir))
fig.savefig('./logs/{}/{}/{}.png'.format(
image_dir, args.logdir, (i - 99) / 100))
if i % 1000 == 999:
saver.save(sess,
os.path.join(ckpt_dir, "model.ckpt"),
global_step=i)
testset._index_in_epoch = 0
preds = np.zeros(
(testset.num_examples / batch_size * batch_size))
gts = np.zeros(
(testset.num_examples / batch_size * batch_size))
for j in range(testset.num_examples / batch_size):
test_img, test_label = testset.next_batch(batch_size)
by = sess.run(true_y, feed_dict={real_data: test_img})
preds[j * batch_size:(j + 1) * batch_size] = np.argmax(
by, 1)
gts[j * batch_size:(j + 1) * batch_size] = np.argmax(
test_label, 1)
acc = np.sum(preds == gts) / float(gts.shape[0])
print("Training ite %d, testing acc: %f" % (i, acc))
parser.add_argument('--w_tv', type=float, default=0.000005)
args = parser.parse_args()
if __name__ == '__main__':
SEED = 0
random.seed(SEED)
np.random.seed(SEED)
torch.manual_seed(SEED)
torch.cuda.manual_seed(SEED)
device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
checkpoint_dir, image_dir = prepare_sub_folder(args.output_path,
delete_first=True)
dataset = make_dataset(args)
dataloader = DataLoader(dataset=dataset,
batch_size=args.batch_size,
shuffle=True,
drop_last=False,
num_workers=args.num_workers)
warper = Warper(args)
warper.to(device)
warper.train()
paras = list(warper.parameters())
opt = optim.Adam([p for p in paras if p.requires_grad],
lr=args.lr,
betas=(0.5, 0.999),
weight_decay=1e-5)
def main():
mus = np.concatenate([np.identity(10), np.zeros((10, z_dim - 10))], 1)
covs = np.stack([np.identity(z_dim) * args.sigma] * 10, 0)
max_iter_step = 60000
trainset = make_dataset(trainx, trainy)
testset = make_dataset(testx, testy)
with tf.device(device):
unlabeled_data, z, opt_c_z, opt_c_x, opt_e, opt_g, fake_x, c_loss_z, c_loss_x, e_loss, g_loss, unlabeled_z = build_graph(
)
merged_all = tf.summary.merge_all()
saver = tf.train.Saver()
config = tf.ConfigProto(allow_soft_placement=True,
log_device_placement=False)
config.gpu_options.allow_growth = False
config.gpu_options.per_process_gpu_memory_fraction = 0.95
with tf.Session(config=config) as sess:
def sample_z(gmm):
if gmm is None:
return np.random.normal(0, 1,
[batch_size, z_dim]).astype(np.float32)
ys = np.random.randint(10, size=batch_size)
# np.random.multinomial(1, [1/10.]*10, size=batch_size)
return np.concatenate([
np.random.multivariate_normal(mus[y], covs[y], 1)
for y in ys
], 0)
else:
return gmm.sample(batch_size)[0]
def sample_z_given_y(gmm, inx):
if gmm is None:
return np.random.normal(0, 1, [1, z_dim]).astype(np.float32)
return np.random.multivariate_normal(mus[inx], covs[inx], 1)
else:
return np.random.multivariate_normal(gmm.means_[inx],
gmm.covariances_[inx], 1)
sess.run(tf.global_variables_initializer())
summary_writer = tf.summary.FileWriter(log_dir, sess.graph)
gmm = None
print("Training clustering wgan...")
for i in range(max_iter_step):
if i < 25 or i % 500 == 0:
citers = 100
else:
citers = Citers
for j in range(citers):
if i % 100 == 99 and j == 0:
run_options = tf.RunOptions(
trace_level=tf.RunOptions.FULL_TRACE)
run_metadata = tf.RunMetadata()
_, _, merged, loss_c_z_, loss_c_x_ = sess.run(
[opt_c_z, opt_c_x, merged_all, c_loss_z, c_loss_x],
feed_dict={
z: sample_z(gmm),
unlabeled_data: trainset.next_batch(batch_size)[0]
},
options=run_options,
run_metadata=run_metadata)
summary_writer.add_summary(merged, i)
summary_writer.add_run_metadata(
run_metadata, 'critic_metadata {}'.format(i), i)
else:
_, _ = sess.run(
[opt_c_z, opt_c_x],
feed_dict={
unlabeled_data: trainset.next_batch(batch_size)[0],
z: sample_z(gmm)
})
if i % 100 == 99:
_, _, merged, loss_e_, loss_g_ = sess.run(
[opt_g, opt_e, merged_all, e_loss, g_loss],
feed_dict={
z: sample_z(gmm),
unlabeled_data: trainset.next_batch(batch_size)[0]
},
options=run_options,
run_metadata=run_metadata)
summary_writer.add_summary(merged, i)
summary_writer.add_run_metadata(
run_metadata,
'generator_and_encoder_metadata {}'.format(i), i)
else:
_, _ = sess.run(
[opt_g, opt_e],
feed_dict={
z: sample_z(gmm),
unlabeled_data: trainset.next_batch(batch_size)[0]
})
if i % 100 == 99:
print(
"Training ite %d, c_loss_z: %f, c_loss_x: %f, e_loss: %f, g_loss: %f"
% (i, loss_c_z_, loss_c_x_, loss_e_, loss_g_))
batch_y = []
for j in range(10):
for k in range(10):
batch_y.append(j)
batch_z = np.concatenate(
[sample_z_given_y(gmm, y) for y in batch_y[:64]], 0)
bx = sess.run(fake_x, feed_dict={z: batch_z})
batch_z = np.concatenate(
[sample_z_given_y(gmm, y) for y in batch_y[36:]], 0)
bx1 = sess.run(fake_x, feed_dict={z: batch_z})
bx = np.concatenate([bx, bx1[28:]], 0)
fig = plt.figure(image_dir + '.clustering-wgan')
grid_show(fig, (bx + 1) / 2, [32, 32, channel])
if not os.path.exists('./logs/{}/{}'.format(
image_dir, args.logdir)):
os.makedirs('./logs/{}/{}'.format(image_dir, args.logdir))
fig.savefig('./logs/{}/{}/{}.png'.format(
image_dir, args.logdir, (i - 99) / 100))
if i % 500 == 0:
trainset._index_in_epoch = 0
true_zs = np.zeros(
(trainset.num_examples / batch_size * batch_size, z_dim))
gts = np.zeros(
(trainset.num_examples / batch_size * batch_size))
for j in range(trainset.num_examples / batch_size):
train_img, train_label = trainset.next_batch(batch_size)
bz = sess.run(unlabeled_z,
feed_dict={unlabeled_data: train_img})
true_zs[j * batch_size:(j + 1) * batch_size] = bz
gts[j * batch_size:(j + 1) * batch_size] = train_label
gmm = mixture.BayesianGaussianMixture(
n_components=10, covariance_type='full').fit(true_zs)
preds = gmm.predict(true_zs)
print("Training ite %d, acc: %f, nmi: %f" %
(i, cluster_acc(preds, gts), cluster_nmi(preds, gts)))
#preds1 = np.argmax(np.sum(np.square(true_zs[:, np.newaxis, :] - mus[np.newaxis, :, :]), 2), 1)
#print("Training ite %d, new gmm, acc: %f, nmi: %f; prior gmm, acc: %f, nmi: %f" % (i, cluster_acc(preds, gts), cluster_nmi(preds, gts), cluster_acc(preds1, gts), cluster_nmi(preds1, gts)))
if i % 1000 == 999:
saver.save(sess,
os.path.join(ckpt_dir, "model.ckpt"),
global_step=i)
def main(path_to_train_data, path_to_validation_data):
args = Args()
df_trn, df_val = dataset.make_dataset(path_to_train_data,
path_to_validation_data)
if args.should_continue:
sorted_checkpoints = _sorted_checkpoints(args)
if len(sorted_checkpoints) == 0:
raise ValueError(
"Used --should_continue but no checkpoint was found in --output_dir."
)
else:
args.model_name_or_path = sorted_checkpoints[-1]
if (os.path.exists(args.output_dir) and os.listdir(args.output_dir)
and args.do_train and not args.overwrite_output_dir
and not args.should_continue):
raise ValueError(
"Output directory ({}) already exists and is not empty. Use --overwrite_output_dir to overcome."
.format(args.output_dir))
# Setup CUDA, GPU & distributed training
device = torch.device("cuda")
args.n_gpu = torch.cuda.device_count()
args.device = device
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO if args.local_rank in [-1, 0] else logging.WARN,
)
logger.warning(
"Process rank: %s, device: %s, n_gpu: %s, distributed training: %s, 16-bits training: %s",
args.local_rank,
device,
args.n_gpu,
bool(args.local_rank != -1),
args.fp16,
)
# Set seed
utils.set_seed(args)
config = AutoConfig.from_pretrained(args.config_name,
cache_dir=args.cache_dir)
tokenizer = AutoTokenizer.from_pretrained(args.tokenizer_name,
cache_dir=args.cache_dir)
model = AutoModelWithLMHead.from_pretrained(
args.model_name_or_path,
from_tf=False,
config=config,
cache_dir=args.cache_dir,
)
model.to(args.device)
logger.info("Training/evaluation parameters %s", args)
# Training
if args.do_train:
train_dataset = utils.load_and_cache_examples(args,
tokenizer,
df_trn,
df_val,
evaluate=False)
global_step, tr_loss = train.train(args, train_dataset, model,
tokenizer)
logger.info(" global_step = %s, average loss = %s", global_step,
tr_loss)
# Saving best-practices: if you use save_pretrained for the model and tokenizer, you can reload them using from_pretrained()
if args.do_train:
# Create output directory if needed
os.makedirs(args.output_dir, exist_ok=True)
logger.info("Saving model checkpoint to %s", args.output_dir)
# Save a trained model, configuration and tokenizer using `save_pretrained()`.
# They can then be reloaded using `from_pretrained()`
model_to_save = (model.module if hasattr(model, "module") else model
) # Take care of distributed/parallel training
model_to_save.save_pretrained(args.output_dir)
tokenizer.save_pretrained(args.output_dir)
# Good practice: save your training arguments together with the trained model
torch.save(args, os.path.join(args.output_dir, "training_args.bin"))
# Load a trained model and vocabulary that you have fine-tuned
model = AutoModelWithLMHead.from_pretrained(args.output_dir)
tokenizer = AutoTokenizer.from_pretrained(args.output_dir)
model.to(args.device)
# Evaluation
results = {}
if args.do_eval and args.local_rank in [-1, 0]:
checkpoints = [args.output_dir]
if args.eval_all_checkpoints:
checkpoints = list(
os.path.dirname(c) for c in sorted(
glob.glob(args.output_dir + "/**/" + WEIGHTS_NAME,
recursive=True)))
logging.getLogger("transformers.modeling_utils").setLevel(
logging.WARN) # Reduce logging
logger.info("Evaluate the following checkpoints: %s", checkpoints)
for checkpoint in checkpoints:
global_step = checkpoint.split(
"-")[-1] if len(checkpoints) > 1 else ""
prefix = checkpoint.split(
"/")[-1] if checkpoint.find("checkpoint") != -1 else ""
model = AutoModelWithLMHead.from_pretrained(checkpoint)
model.to(args.device)
result = evaluate.evaluate(args,
model,
tokenizer,
df_trn,
df_val,
prefix=prefix)
result = dict(
(k + "_{}".format(global_step), v) for k, v in result.items())
results.update(result)
return results
import pathlib
def get_filenames_of_path(path: pathlib.Path, ext: str = '*'):
"""Returns a list of files in a directory/path. Uses pathlib."""
filenames = [
file for file in path.glob(ext + '/**/*.npy') if file.is_file()
]
return filenames
root = pathlib.Path('/data/dk/datasets_CROPS/crops_fixed_scale_uint8/valid')
# class_to_idx = {'FP': 0, 'LAD': 1, 'LCX': 2, 'RCA': 3, 'LM': 4}
class_to_idx = ['bengin', 'TP', 'negative', 'nipple']
train_samples = make_dataset(root, class_to_idx, extensions='npy')
print(len(train_samples))
dataset_train = ClassificationDataset(train_samples)
print(len(dataset_train))
train_sampler = BalancedBatchSampler(dataset_train)
# dataloader_train = DataLoader(dataset=dataset_train, sampler=train_sampler, batch_size=4)
dataloader_train = DataLoader(dataset=dataset_train,
batch_size=4,
shuffle=True)
#
#
x, y = next(iter(dataloader_train))
print(x)
print(y)
#
weights[_w_name] = checkpoint['state_dict'][w_name]
big_model.load_state_dict(weights)
big_model.cuda()
model = get_model(num_classes=27, sample_size=224, width_mult=1.0)
try:
checkpoint = torch.load('./best_classifier_checkpoint.pth.tar',
map_location=torch.device('cpu'))
model.load_state_dict(checkpoint)
except:
checkpoint = torch.load(
'./pretrain/models/imagenet_mobilenetv2_autoencoder.pth')
model.load_feature_detector_from_autoencoder(checkpoint['state_dict'])
model.cuda()
train_ds, test_ds = make_dataset()
loss_fn = nn.CrossEntropyLoss()
def SoftmaxWithTemperature(temp=1, dim=1):
def fn(x):
exp = torch.exp(x / temp)
denom = torch.sum(exp, dim)
return exp / denom
return fn
act_fn = SoftmaxWithTemperature(temp=10)
learning_rate = 0.001
clip_value = 0.05
def main():
""" main function """
RANDOM_SEED = 42
paths = {'train': '../data/train.csv', 'test': '../data/test.csv'}
target, test, train = make_dataset(paths)
X, X_valid, y, y_valid = train_test_split(train,
target,
test_size=0.2,
random_state=RANDOM_SEED)
forest = RandomForestRegressor(n_jobs=-1,
n_estimators=200,
random_state=RANDOM_SEED,
max_features=50,
min_samples_leaf=2,
min_samples_split=2,
max_depth=20)
forest.fit(X, y)
predictions = forest.predict(X_valid)
# gboost = GradientBoostingRegressor(n_estimators=1500,
# learning_rate=0.03,
# max_features=40,
# min_samples_leaf=2,
# min_samples_split=12,
# random_state=RANDOM_SEED)
# gboost.fit(train, target)
# lasso = Lasso(alpha=0.0005, max_iter=5000, random_state=RANDOM_SEED)
# lasso.fit(X, y)
# predictions = lasso.predict(X_valid)
# ridge = Ridge(alpha=7.5, random_state=RANDOM_SEED)
# ridge.fit(train, target)
def cv_rmse(model):
rmse = sqrt(-cross_val_score(model,
train,
target,
scoring="neg_mean_squared_error",
cv=5,
n_jobs=-1))
return (rmse)
rf_score = cv_rmse(forest)
# las_score = cv_rmse(lasso)
# rid_score = cv_rmse(ridge)
# gb_score = cv_rmse(gboost)
print("RandomForest CV score is: {:.4f} ({:.4f})".format(
rf_score.mean(), rf_score.std()))
# print("Gradient Boosting CV score is: {:.4f} ({:.4f})".format(
# gb_score.mean(), gb_score.std()))
# print("Lasso CV score is: {:.4f} ({:.4f})".format(
# las_score.mean(), las_score.std()))
# print("Ridge CV score is: {:.4f} ({:.4f})".format(
# rid_score.mean(), rid_score.std()))
# sns.scatterplot(x=y_valid, y=predictions)
# plt.show()
print("RandomForest score is: {:.4f}".format(
sqrt(mean_squared_error(y_valid, predictions)).mean()))
print("RandomForest R2 score is : {:.4f}".format(
forest.score(X_valid, y_valid)))
params = open_config_file(args.config)
params.gpu_ids = [params.gpu_ids]
# set gpu ids
if len(params.gpu_ids) > 0:
torch.cuda.set_device(params.gpu_ids[0])
params.nThreads = 1 # test code only supports nThreads = 1
params.batchSize = 1 # test code only supports batchSize = 1
params.serial_batches = True # no shuffle
params.no_flip = True # no flip
###
create_dir(Path(params.results_dir))
inference_images = make_dataset(params.source_dir)
num_inference_images = len(inference_images)
print(f'#inference images = {num_inference_images}')
model = create_model(params)
transform = get_transform(params)
start_time = time.time()
for i, img_path in enumerate(inference_images):
if params.how_many:
if i >= params.how_many:
print(f'how_many: {params.how_many}')
break
frameid = img_path.split('/')[-1].replace('.png', '')
}
if __name__ == '__main__':
model_dict = {
'n_res_blocks': config.n_res,
'n_classes': 10,
'n_channels': 128,
}
os.system('mkdir ' + config.save_dir)
np_dataset = pickle.load(open(config.dataset, 'rb'))
np_train_dataset, np_val_dataset = np_dataset
torch.manual_seed(config.seed)
train_rel_dataset, train_nonrel_dataset = make_dataset(np_train_dataset, rel_augmentation=True)
train_dataset = torch.utils.data.ConcatDataset([train_rel_dataset, train_nonrel_dataset])
train_dataloader = torch.utils.data.DataLoader(train_dataset, batch_size=config.batch_size, shuffle=True, pin_memory=True, num_workers=config.n_cpu)
val_rel_dataset, val_nonrel_dataset = make_dataset(np_val_dataset)
val_rel_dataloader = torch.utils.data.DataLoader(val_rel_dataset, batch_size=config.batch_size, pin_memory=True)
val_nonrel_dataloader = torch.utils.data.DataLoader(val_nonrel_dataset, batch_size=config.batch_size, pin_memory=True)
model_name = '{}_{}_{}'.format(model_dict['n_res_blocks'], model_dict['n_channels'], config.tag)
tb = tensorboard.tf_recorder(model_name, config.log_dir)
net = make_model(model_dict).cuda()
optimizer = optim.Adam(net.parameters(), lr=config.lr, weight_decay=config.weight_decay)
criterion = nn.CrossEntropyLoss().cuda()
if config.resume:
def features():
start_time = time.time()
make_dataset(config)
end_time = time.time()
return end_time - start_time
from train import train_model, save_model
from dataset import make_dataset, save_dataset, load_dataset
from config import make_config
import sys
config = make_config("""{
"target":"example",
"activation":"relu",
"solver":"adam",
"limit": 1000
}""")
try:
dataset = load_dataset(config)
except:
dataset = make_dataset(config)
save_dataset(config, dataset)
print("loaded dataset")
def features():
start_time = time.time()
make_dataset(config)
end_time = time.time()
return end_time - start_time
def train(dataset):
X, Y = dataset
start_time = time.time()
def main():
max_iter_step = 60000
mnist_trainset = make_dataset(mnist_trainX, mnist_trainY)
svhn_trainset = make_dataset(svhn_trainX, svhn_trainY)
with tf.device(device):
x1, f1, y1, x2, f2, opt, loss1, y1_test, y2_test, feature1, feature2, opt_2, loss2_critic, loss2_clf, f1_test, f2_test, reset, opt_3, loss3, epsilon, init = build_graph(
)
merged_all = tf.summary.merge_all()
saver = tf.train.Saver()
config = tf.ConfigProto(allow_soft_placement=True,
log_device_placement=False)
config.gpu_options.allow_growth = False
with tf.Session(config=config) as sess:
sess.run(tf.global_variables_initializer())
summary_writer = tf.summary.FileWriter(log_dir, sess.graph)
F1 = np.zeros([svhn_trainY.shape[0], 8, 8, 64])
Y1 = np.zeros(svhn_trainY.shape)
F2 = np.zeros([mnist_trainY.shape[0], 8, 8, 64])
Y2 = np.zeros(mnist_trainY.shape)
print("Pretraining...")
for i in range(10000):
svhn_bx, svhn_by = svhn_trainset.next_batch(batch_size)
mnist_bx, _ = mnist_trainset.next_batch(batch_size)
[_, loss1_] = sess.run([opt, loss1],
feed_dict={
x1: svhn_bx,
y1: svhn_by,
x2: mnist_bx
})
if i % 100 == 99:
print("Pretraining ite %d, loss1: %f" % (i, loss1_))
if i % 1000 == 999:
acc1_ = []
for j in range(26):
y1_test_ = sess.run(
[y1_test],
feed_dict={x1: svhn_testX[j * 1000:(j + 1) * 1000]})
acc1_.append(
np.mean(
np.equal(svhn_testY[j * 1000:(j + 1) * 1000],
y1_test_).astype(np.float32)))
acc2_ = []
for j in range(10):
y2_test_ = sess.run(
[y2_test],
feed_dict={x2: mnist_testX[j * 1000:(j + 1) * 1000]})
acc2_.append(
np.mean(
np.equal(mnist_testY[j * 1000:(j + 1) * 1000],
y2_test_).astype(np.float32)))
print("--------->Pretraining ite %d, acc1: %f, acc2: %f" %
(i, np.mean(acc1_), np.mean(acc2_)))
for i in range(int(math.ceil(svhn_trainset._num_examples /
batch_size))):
start = i * batch_size
end = min((i + 1) * batch_size, svhn_trainset._num_examples)
F1[start:end] = sess.run(
f1, feed_dict={x1: svhn_trainset._images[start:end]})
Y1[start:end] = svhn_trainset._labels[start:end]
for i in range(
int(math.ceil(mnist_trainset._num_examples / batch_size))):
start = i * batch_size
end = min((i + 1) * batch_size, mnist_trainset._num_examples)
F2[start:end] = sess.run(
f2, feed_dict={x2: mnist_trainset._images[start:end]})
Y2[start:end] = mnist_trainset._labels[start:end]
np.savez('features.npz', F1=F1, Y1=Y1, F2=F2, Y2=Y2)
# npz = np.load('features.npz')
# F1 = npz['F1']
# F2 = npz['F2']
# Y1 = npz['Y1']
# Y2 = npz['Y2']
print("Trainging...")
F1_set = make_dataset(F1, Y1)
F2_set = make_dataset(F2, Y2)
for ite in range(100):
sess.run(init)
for i in range(2000):
f1_, y1_ = F1_set.next_batch(batch_size)
f2_, y2_ = F2_set.next_batch(batch_size)
[_, loss2_clf_,
loss2_critic_] = sess.run([opt_2, loss2_clf, loss2_critic],
feed_dict={
feature1: f1_,
y1: y1_,
feature2: f2_
})
if i % 100 == 99:
[f1_test_, f2_test_] = sess.run([f1_test, f2_test],
feed_dict={
feature1: f1_,
feature2: f2_
})
print(
"Training epoch %d, ite %d, loss2_clf: %f, loss2_critic: %f, acc1: %f, acc2: %f"
%
(ite, i, loss2_clf_, loss2_critic_,
np.mean(np.equal(y1_, f1_test_).astype(np.float32)),
np.mean(np.equal(y2_, f2_test_).astype(np.float32))))
tmp = np.zeros(F1_set._images.shape)
for i in range(int(math.ceil(F1_set._num_examples / batch_size))):
print("Training adversarial samples at batch %d" % i)
start = i * batch_size
end = min((i + 1) * batch_size, svhn_trainset._num_examples)
f1_ = F1_set._images[start:end]
sess.run(reset)
for j in range(100):
[_, loss3_] = sess.run([opt_3, loss3],
feed_dict={feature1: f1_})
#print(i, j, loss3_)
tmp[start:end] = epsilon.eval()[:end - start] + f1_
F1_set._images = tmp