Python BlastDatabase.download示例

示例#1

文件： dbfasta.py 项目： numerodix/gridportal

	def download(self):
		BlastDatabase.download(self)
		# wget chokes on files >2GB
		# invoke = ConfigSys.wget + " -nc"		# -nc to overwrite existing file with same name
		invoke = ConfigSys.curl + " -O -s "
		if (not self.flag_debug):
			invoke += " -nv"
		invoke += " " + self.url + "/" + self.downloaded_filemask
		self.invokeCmd(invoke)

示例#2

文件： dbasn1.py 项目： numerodix/gridportal

	def download(self):
		BlastDatabase.download(self)
		invoke = ConfigSys.cp + " " + self.script_cwd + "/update_blastdb.pl ."
		self.invokeCmd(invoke)
		
		# use the --force flag, update_blastdb.pl isn't clever enough to detect
		# incomplete downloads
		invoke = ConfigSys.perl + " update_blastdb.pl --force"
		if (self.flag_debug):
			pass
#			invoke += " --verbose"		# do nothing, this debug is too detailed
		invoke += " " + self.name
		self.invokeCmd(invoke)

示例#3

文件： dbasn1.py 项目： numerodix/gridportal

	def download(self):
		BlastDatabase.download(self)
		ftp.getDB(self.name, Config.ncbi_formatted, self.workdir, self.flag_debug)