#for i in ntd.getXcoordA():
# print i
imp2.show()
print "Extracting Nucleus ..."
#subwwhh = 110 # this must be guessed in the pre-run, by doing particle analysis and get the approximate sizes.
en = NucleusExtractor(imp)
#en.constructNodesByPA(imp2)
ns = en.getPerNucleusBinImgProcessors(imp, imp2)
# for i in range(10):
# ImagePlus(str(i), ns.get(i).getBinip()).show()
#print "x", ns.get(i).getOrgroi().getBounds().x, "y", ns.get(i).getOrgroi().getBounds().y
#print "w", ns.get(i).getOrgroi().getBounds().width, "h", ns.get(i).getOrgroi().getBounds().height
en.reassignNodes(ns);
'''
#print 'node length before filtering: ' + str(en.getNodes().size())
#en.analyzeDotsandBinImages()
#print 'node length after filtering: ' + str(en.getNodes().size())
nodes = en.getNodes()
print "Nodes count:", nodes.size()
#stk = ImageStack(subwwhh, subwwhh)
#for n in nodes:
# binip = n.getBinip()
