method='MSTree',
missing_data='pair_delete',
matrix_type='symmetric',
edge_weight='eBurst',
branch_recrafting='F')
appendTo(tree, 'goeBurstI', trees)
tree = GrapeTree2(profile=sim_data, method='MSTreeV2')
appendTo(tree, 'MSTreeV3', trees)
tree = GrapeTree2(profile=sim_data,
method='MSTree',
missing_data='pair_delete',
matrix_type='asymmetric',
edge_weight='harmonic',
branch_recrafting='F')
appendTo(tree, 'MS2', trees)
tree = GrapeTree(profile=sim_data,
method='MSTree',
missing_data='pair_delete',
matrix_type='asymmetric',
edge_weight='harmonic',
neighbor_branch_reconnection='F')
appendTo(tree, 'MSA', trees)
tree = GrapeTree(profile=sim_data, method='NJ', missing_data='pair_delete')
appendTo(tree, 'NJ', trees)
print trees.as_string('nexus')
