def test_filter_missing_indels_child_proportion(self): ''' test that filter_missing_indels() screens low child proportion ''' self.variants['dp4_child'] = ['20,15,30,25', '30,30,7,7'] status = filter_missing_indels(self.variants) self.assertTrue(all(status == Series([True, False])))
def test_filter_missing_indels_parental_depth(self): ''' test that filter_missing_indels() screens low parental depth ''' self.variants['dp4_mother'] = ['20,20,0,1', '3,3,0,0'] status = filter_missing_indels(self.variants) self.assertTrue(all(status == Series([True, False])))
def test_filter_missing_indels_parental_proportion(self): ''' test that filter_missing_indels() screens high parental proportion ''' self.variants['dp4_mother'] = ['20,20,0,1', '4,4,0,1'] status = filter_missing_indels(self.variants) self.assertTrue(all(status == Series([True, False])))
def test_filter_missing_indels_child_depth(self): ''' test that filter_missing_indels() screens low child alt depth ''' self.variants['dp4_child'] = ['20,15,30,25', '2,2,1,1'] status = filter_missing_indels(self.variants) self.assertTrue(all(status == Series([True, False])))
def test_filter_missing_indels_child_proportion(self): ''' test that filter_missing_indels() screens low child proportion ''' self.variants['dp4_child'] = ['20,15,30,25', '30,30,7,7'] status = filter_missing_indels(self.variants) self.assertTrue(all(status == Series([True, False])))
def test_filter_missing_indels_parental_proportion(self): ''' test that filter_missing_indels() screens high parental proportion ''' self.variants['dp4_mother'] = ['20,20,0,1', '4,4,0,1'] status = filter_missing_indels(self.variants) self.assertTrue(all(status == Series([True, False])))
def test_filter_missing_indels_parental_depth(self): ''' test that filter_missing_indels() screens low parental depth ''' self.variants['dp4_mother'] = ['20,20,0,1', '3,3,0,0'] status = filter_missing_indels(self.variants) self.assertTrue(all(status == Series([True, False])))
def test_filter_missing_indels_child_depth(self): ''' test that filter_missing_indels() screens low child alt depth ''' self.variants['dp4_child'] = ['20,15,30,25', '2,2,1,1'] status = filter_missing_indels(self.variants) self.assertTrue(all(status == Series([True, False])))
def test_filter_missing_indels_parental_alt(self): ''' test that filter_missing_indels() screens high parental alts ''' self.variants['dp4_mother'] = ['20,20,0,1', '20,20,0,2'] self.variants['dp4_father'] = ['30,30,0,1', '30,30,0,2'] status = filter_missing_indels(self.variants) self.assertTrue(all(status == Series([True, False])))
def test_filter_missing_indels_parental_alt(self): ''' test that filter_missing_indels() screens high parental alts ''' self.variants['dp4_mother'] = ['20,20,0,1', '20,20,0,2'] self.variants['dp4_father'] = ['30,30,0,1', '30,30,0,2'] status = filter_missing_indels(self.variants) self.assertTrue(all(status == Series([True, False])))
def test_filter_missing_indels(self): ''' test that filter_missing_indels() passes the default variants ''' status = filter_missing_indels(self.variants) self.assertTrue(all(status == Series([True, True])))
def test_filter_missing_indels(self): ''' test that filter_missing_indels() passes the default variants ''' status = filter_missing_indels(self.variants) self.assertTrue(all(status == Series([True, True])))