def check_prerequisites(self, env):
"""list and check specific prequisites for this plot.
"""
super(SurfaceFields, self).check_prerequisites(env)
print(" Checking prerequisites for : {0}".format(self.__class__.__name__))
# check the observation sea surface height file
sourceFile = '{0}/{1}'.format( env['SSHOBSDIR'], env['SSHOBSFILE'] )
linkFile = '{0}/{1}'.format(env['WORKDIR'],env['SSHOBSFILE'])
diagUtilsLib.createSymLink(sourceFile, linkFile)
def check_prerequisites(self, env):
"""list and check specific prequisites for this plot.
"""
super(SeasonalCycle, self).check_prerequisites(env)
print(' Checking prerequisites for : {0}'.format(self.__class__.__name__))
# set a link to SSTOBSDIR/SSTOBSFILE
sourceFile = '{0}/{1}'.format(env['SSTOBSDIR'], env['SSTOBSFILE'])
linkFile = '{0}/{1}'.format(env['WORKDIR'], env['SSTOBSFILE'])
diagUtilsLib.createSymLink(sourceFile, linkFile)
def check_prerequisites(self, env):
"""list and check specific prequisites for this plot.
"""
super(MOCAnnual, self).check_prerequisites(env)
print(" Checking prerequisites for : {0}".format(self.__class__.__name__))
# create link to MOC average file
sourceFile = '{0}/{1}.pop.h.{2}-{3}.moc.nc'.format(env['TAVGDIR'], env['CASE'], env['TSERIES_YEAR0'].zfill(4), env['TSERIES_YEAR1'].zfill(4))
linkFile = '{0}/{1}.pop.h.MOC.{2}_cat_{3}.nc'.format(env['WORKDIR'], env['CASE'], env['TSERIES_YEAR0'].zfill(4), env['TSERIES_YEAR1'].zfill(4))
diagUtilsLib.createSymLink(sourceFile, linkFile)
env['MOCTSANNFILE'] = os.environ['MOCTSANNFILE'] = linkFile
def check_prerequisites(self, env):
"""list and check specific prequisites for this plot.
"""
super(RegionalMeanTS, self).check_prerequisites(env)
print(' Checking prerequisites for : {0}'.format(self.__class__.__name__))
# create links to the regional horizontal mean average files
for region in self._regions:
sourceFile = '{0}/{1}_hor_mean_hor.meanConcat.{2}.pop.h_{3}-{4}.nc'.format(env['TAVGDIR'], region, env['CASE'], env['TSERIES_YEAR0'].zfill(4), env['TSERIES_YEAR1'].zfill(4))
linkFile = '{0}/{1}_hor_mean_{2}.pop.h_{3}-{4}.nc'.format(env['WORKDIR'], region, env['CASE'], env['TSERIES_YEAR0'].zfill(4), env['TSERIES_YEAR1'].zfill(4))
diagUtilsLib.createSymLink(sourceFile, linkFile)
def check_prerequisites(self, env):
"""list and check specific prequisites for this plot.
"""
super(MixedLayerDepth, self).check_prerequisites(env)
print(' Checking prerequisites for : {0}'.format(self.__class__.__name__))
# set SEASAVGRHO env var to the env['SEASAVGRHO'] output file name
os.environ['SEASAVGRHO'] = env['SEASAVGRHO']
# set CNTRLSEASAVGRHO env var to the env['CNTRLSEASAVGRHO'] output file name
os.environ['CNTRLSEASAVGRHO'] = env['CNTRLSEASAVGRHO']
# set a link to RHOOBSDIR/RHOOBSFILE
sourceFile = '{0}/{1}'.format(env['RHOOBSDIR'], env['RHOOBSFILE'])
linkFile = '{0}/{1}'.format(env['WORKDIR'], env['RHOOBSFILE'])
diagUtilsLib.createSymLink(sourceFile, linkFile)
def check_prerequisites(self, env):
"""list and check specific prequisites for this plot.
"""
super(RegionalMeanTS, self).check_prerequisites(env)
print(' Checking prerequisites for : {0}'.format(
self.__class__.__name__))
# create links to the regional horizontal mean average files
for region in self._regions:
sourceFile = '{0}/{1}_hor_mean_hor.meanConcat.{2}.pop.h_{3}-{4}.nc'.format(
env['TAVGDIR'], region, env['CASE'],
env['TSERIES_YEAR0'].zfill(4), env['TSERIES_YEAR1'].zfill(4))
linkFile = '{0}/{1}_hor_mean_{2}.pop.h_{3}-{4}.nc'.format(
env['WORKDIR'], region, env['CASE'],
env['TSERIES_YEAR0'].zfill(4), env['TSERIES_YEAR1'].zfill(4))
diagUtilsLib.createSymLink(sourceFile, linkFile)
def check_prerequisites(self, env):
"""list and check specific prequisites for this plot.
"""
super(MOCAnnual, self).check_prerequisites(env)
print(" Checking prerequisites for : {0}".format(
self.__class__.__name__))
# create link to MOC average file
sourceFile = '{0}/{1}.pop.h.{2}-{3}.moc.nc'.format(
env['TAVGDIR'], env['CASE'], env['TSERIES_YEAR0'].zfill(4),
env['TSERIES_YEAR1'].zfill(4))
linkFile = '{0}/{1}.pop.h.MOC.{2}_cat_{3}.nc'.format(
env['WORKDIR'], env['CASE'], env['TSERIES_YEAR0'].zfill(4),
env['TSERIES_YEAR1'].zfill(4))
diagUtilsLib.createSymLink(sourceFile, linkFile)
env['MOCTSANNFILE'] = os.environ['MOCTSANNFILE'] = linkFile
def check_prerequisites(self, env):
"""This method does some generic checks for the prerequisites
that are common to all diagnostics
"""
print(' Checking generic prerequisites for ocean diagnostics.')
# setup the working directory for each diagnostics class
env = self.setup_workdir(env)
# check that temperature observation TOBSFILE exists and is readable
sourceFile = '{0}/{1}'.format(env['TSOBSDIR'], env['TOBSFILE'])
linkFile = '{0}/{1}'.format(env['WORKDIR'], env['TOBSFILE'])
diagUtilsLib.createSymLink(sourceFile, linkFile)
# check that salinity observation SOBSFILE exists and is readable
sourceFile = '{0}/{1}'.format(env['TSOBSDIR'], env['SOBSFILE'])
linkFile = '{0}/{1}'.format(env['WORKDIR'], env['SOBSFILE'])
diagUtilsLib.createSymLink(sourceFile, linkFile)
def check_prerequisites(self, env):
"""list and check specific prequisites for this plot.
"""
super(MixedLayerDepth, self).check_prerequisites(env)
print(' Checking prerequisites for : {0}'.format(
self.__class__.__name__))
# set SEASAVGRHO env var to the env['SEASAVGRHO'] output file name
os.environ['SEASAVGRHO'] = env['SEASAVGRHO']
# set CNTRLSEASAVGRHO env var to the env['CNTRLSEASAVGRHO'] output file name
os.environ['CNTRLSEASAVGRHO'] = env['CNTRLSEASAVGRHO']
# set a link to RHOOBSDIR/RHOOBSFILE
sourceFile = '{0}/{1}'.format(env['RHOOBSDIR'], env['RHOOBSFILE'])
linkFile = '{0}/{1}'.format(env['WORKDIR'], env['RHOOBSFILE'])
diagUtilsLib.createSymLink(sourceFile, linkFile)
def check_prerequisites(self, env):
"""This method does some generic checks for the prerequisites
that are common to all diagnostics
"""
print(' Checking generic prerequisites for ocean diagnostics.')
# setup the working directory for each diagnostics class
env = self.setup_workdir(env)
# check that temperature observation TOBSFILE exists and is readable
sourceFile = '{0}/{1}'.format(env['TSOBSDIR'], env['TOBSFILE'])
linkFile = '{0}/{1}'.format(env['WORKDIR'], env['TOBSFILE'])
diagUtilsLib.createSymLink(sourceFile, linkFile)
# check that salinity observation SOBSFILE exists and is readable
sourceFile = '{0}/{1}'.format(env['TSOBSDIR'], env['SOBSFILE'])
linkFile = '{0}/{1}'.format(env['WORKDIR'], env['SOBSFILE'])
diagUtilsLib.createSymLink(sourceFile, linkFile)
def check_prerequisites(self, env):
"""list and check specific prequisites for this plot.
"""
super(EquatorialUpperocean, self).check_prerequisites(env)
print(' Checking prerequisites for : {0}'.format(
self.__class__.__name__))
# check in the PHC2 files exist based on the number of vertical levels
# check temp
phcTemp = env['TOBSFILE']
if env['VERTICAL'] == 42:
phcTemp = env['TOBSFILE_V42']
# check if the link to the PHC temp file exists and is readable
sourceFile = '{0}/{1}'.format(env['TSOBSDIR'], phcTemp)
linkFile = '{0}/{1}'.format(env['WORKDIR'], phcTemp)
diagUtilsLib.createSymLink(sourceFile, linkFile)
# check salt
phcSalt = env['SOBSFILE']
if env['VERTICAL'] == 42:
phcTemp = env['SOBSFILE_V42']
# check if the link to the PHC salt file exists and is readable
sourceFile = '{0}/{1}'.format(env['TSOBSDIR'], phcSalt)
linkFile = '{0}/{1}'.format(env['WORKDIR'], phcSalt)
diagUtilsLib.createSymLink(sourceFile, linkFile)
# check if the link to the TOGA-TAO exists and is readable
sourceFile = '{0}/{1}'.format(env['TOGATAODIR'], env['TOGATAOFILE'])
linkFile = '{0}/{1}'.format(env['WORKDIR'], env['TOGATAOFILE'])
diagUtilsLib.createSymLink(sourceFile, linkFile)
def check_prerequisites(self, env):
"""list and check specific prequisites for this plot.
"""
print(" Checking prerequisites for : {0}".format(
self.__class__.__name__))
super(SurfaceFluxFields, self).check_prerequisites(env)
# setup the fluxobsdir and fluxobsfile based on the coupler version
fluxobsdir = 'FLUXOBSDIR_CPL{0}'.format(env['CPL'])
env['FLUXOBSDIR'] = env[fluxobsdir]
fluxobsfile = 'FLUXOBSFILE_CPL{0}'.format(env['CPL'])
env['FLUXOBSFILE'] = env[fluxobsfile]
# create symbolic link to the flux observation file in the workdir
sourceFile = '{0}/{1}'.format(env['FLUXOBSDIR'], env['FLUXOBSFILE'])
linkFile = '{0}/{1}'.format(env['WORKDIR'], env['FLUXOBSFILE'])
diagUtilsLib.createSymLink(sourceFile, linkFile)
# create symbolic link to zonal average flux file in the workdir
sourceFile = '{0}/za_{1}'.format(env['FLUXOBSDIR'], env['FLUXOBSFILE'])
linkFile = '{0}/za_{1}'.format(env['WORKDIR'], env['FLUXOBSFILE'])
diagUtilsLib.createSymLink(sourceFile, linkFile)
# create symbolic link to wind file in the workdir
sourceFile = '{0}/{1}'.format(env['WINDOBSDIR'], env['WINDOBSFILE'])
linkFile = '{0}/{1}'.format(env['WORKDIR'], env['WINDOBSFILE'])
diagUtilsLib.createSymLink(sourceFile, linkFile)
def check_prerequisites(self, env):
"""list and check specific prequisites for this plot.
"""
print(" Checking prerequisites for : {0}".format(self.__class__.__name__))
super(SurfaceFluxFields, self).check_prerequisites(env)
# setup the fluxobsdir and fluxobsfile based on the coupler version
fluxobsdir = 'FLUXOBSDIR_CPL{0}'.format(env['CPL'])
env['FLUXOBSDIR'] = env[fluxobsdir]
fluxobsfile = 'FLUXOBSFILE_CPL{0}'.format(env['CPL'])
env['FLUXOBSFILE'] = env[fluxobsfile]
# create symbolic link to the flux observation file in the workdir
sourceFile = '{0}/{1}'.format(env['FLUXOBSDIR'],env['FLUXOBSFILE'])
linkFile = '{0}/{1}'.format(env['WORKDIR'],env['FLUXOBSFILE'])
diagUtilsLib.createSymLink(sourceFile, linkFile)
# create symbolic link to zonal average flux file in the workdir
sourceFile = '{0}/za_{1}'.format(env['FLUXOBSDIR'],env['FLUXOBSFILE'])
linkFile = '{0}/za_{1}'.format(env['WORKDIR'],env['FLUXOBSFILE'])
diagUtilsLib.createSymLink(sourceFile, linkFile)
# create symbolic link to wind file in the workdir
sourceFile = '{0}/{1}'.format(env['WINDOBSDIR'],env['WINDOBSFILE'])
linkFile = '{0}/{1}'.format(env['WORKDIR'],env['WINDOBSFILE'])
diagUtilsLib.createSymLink(sourceFile, linkFile)
def check_prerequisites(self, env):
"""list and check specific prequisites for this plot.
"""
super(EquatorialUpperocean, self).check_prerequisites(env)
print(' Checking prerequisites for : {0}'.format(self.__class__.__name__))
# check in the PHC2 files exist based on the number of vertical levels
# check temp
phcTemp = env['TOBSFILE']
if env['VERTICAL'] == 42:
phcTemp = env['TOBSFILE_V42']
# check if the link to the PHC temp file exists and is readable
sourceFile = '{0}/{1}'.format(env['TSOBSDIR'],phcTemp)
linkFile = '{0}/{1}'.format(env['WORKDIR'],phcTemp)
diagUtilsLib.createSymLink(sourceFile, linkFile)
# check salt
phcSalt = env['SOBSFILE']
if env['VERTICAL'] == 42:
phcTemp = env['SOBSFILE_V42']
# check if the link to the PHC salt file exists and is readable
sourceFile = '{0}/{1}'.format(env['TSOBSDIR'],phcSalt)
linkFile = '{0}/{1}'.format(env['WORKDIR'],phcSalt)
diagUtilsLib.createSymLink(sourceFile, linkFile)
# check if the link to the TOGA-TAO exists and is readable
sourceFile = '{0}/{1}'.format(env['TOGATAODIR'],env['TOGATAOFILE'])
linkFile = '{0}/{1}'.format(env['WORKDIR'],env['TOGATAOFILE'])
diagUtilsLib.createSymLink(sourceFile, linkFile)