def try_read_experiments_from_images( self, args, verbose, compare_beam, compare_detector, compare_goniometer, scan_tolerance, format_kwargs, load_models=True, ): """ Try to import images. :param args: The input arguments :param verbose: Print verbose output :param compare_beam: :param compare_detector: :param compare_goniometer: :param scan_tolerance: :param format_kwargs: :param load_models: Whether to load all models for ExperimentLists :return: Unhandled arguments """ from dxtbx.model.experiment_list import ExperimentListFactory from dials.util.phil import FilenameDataWrapper, ExperimentListConverters from glob import glob # If filenames contain wildcards, expand args_new = [] for arg in args: if "*" in arg: args_new.extend(glob(arg)) else: args_new.append(arg) args = args_new unhandled = [] experiments = ExperimentListFactory.from_filenames( args, verbose=verbose, unhandled=unhandled, compare_beam=compare_beam, compare_detector=compare_detector, compare_goniometer=compare_goniometer, scan_tolerance=scan_tolerance, format_kwargs=format_kwargs, load_models=load_models, ) if len(experiments) > 0: filename = "<image files>" obj = FilenameDataWrapper(filename, experiments) ExperimentListConverters.cache[filename] = obj self.experiments.append(obj) return unhandled
def try_read_datablocks_from_images(self, args, verbose, compare_beam, compare_detector, compare_goniometer, scan_tolerance, format_kwargs): ''' Try to import images. :param args: The input arguments :param verbose: Print verbose output :return: Unhandled arguments ''' from dxtbx.datablock import DataBlockFactory from dials.util.phil import FilenameDataWrapper, DataBlockConverters from glob import glob # If filenames contain wildcards, expand args_new = [] for arg in args: if "*" in arg: args_new.extend(glob(arg)) else: args_new.append(arg) args = args_new unhandled = [] datablocks = DataBlockFactory.from_filenames( args, verbose=verbose, unhandled=unhandled, compare_beam=compare_beam, compare_detector=compare_detector, compare_goniometer=compare_goniometer, scan_tolerance=scan_tolerance, format_kwargs=format_kwargs) if len(datablocks) > 0: filename = "<image files>" obj = FilenameDataWrapper(filename, datablocks) DataBlockConverters.cache[filename] = obj self.datablocks.append(obj) return unhandled
def read_experiments(fname): wrapper = FilenameDataWrapper( filename=fname, data=ExperimentListFactory.from_json_file(fname, check_format=True)) return wrapper.data
def read_reflections(fname): wrapper = FilenameDataWrapper( filename=fname, data=flex.reflection_table.from_file(fname)) return wrapper.data