#-*- coding: MS949 -*-
'''
Copyright 2010, Kim, Tae-Sung. All rights reserved.
See copyright.txt for details
'''
__author__ = 'Kim Tae-Sung'
__id__ = '$Id$'
import sys
import dicom
if len(sys.argv) < 3:
print 'python makedicomdir.py basedirpath dicomdir_name'
sys.exit()
try:
ddobj = dicom.dicomfile()
dicom.build_dicomdir(ddobj, sys.argv[1])
ddobj.write_to_file(sys.argv[2])
print "DICOMDIR file is successfully built and "\
"is written to '%s'."%(sys.argv[2])
except RuntimeError, e:
print 'Error in build DICOMDIR'
print e
'''
Copyright 2010, Kim, Tae-Sung. All rights reserved.
See copyright.txt for details
'''
__author__ = 'Kim Tae-Sung'
__id__ = '$Id$'
import sys
import dicom
if len(sys.argv) < 2:
print 'python dumpdicomdir.py dicomdir_name'
sys.exit()
dfo = dicom.dicomfile(sys.argv[1])
ds = dfo['OffsetOfTheFirstDirectoryRecordOfTheRootDirectoryEntity'].to_dataset()
def proc_branch(ds, prefix=''):
while True:
print prefix, #'%04XH'%(ds['RecordInUseFlag'].get_value()), # retired!
print ds['DirectoryRecordType'].get_value().__repr__(),
if ds['DirectoryRecordType'].get_value() == 'PATIENT':
print ds['PatientName'].get_value().__repr__(),
print ds['PatientID'].get_value().__repr__(),
elif ds['DirectoryRecordType'].get_value() == 'STUDY':
print ds['StudyDate'].get_value().__repr__(),
print ds['StudyTime'].get_value().__repr__(),
print ds['StudyID'].get_value().__repr__(),
print ds['StudyDescription'].get_value().__repr__(), # optional
def ex_dicom_to_numpy(fn):
dfo = dicom.dicomfile(fn)
a = dfo.to_numpy_array()
continue
kvlist.append([k.strip(' "\' '), vr, v.split('#')[0].strip()])
# PROCESS FILE LIST ARG
morefnlist = []
for fn in fnlist[:]:
if '*' in fn or '?' in fn:
morefnlist += glob.glob(fn)
fnlist.remove(fn)
fnlist += morefnlist
# PROCESS EACH FILES
replacer = re.compile(r'\[\'[0-9a-fA-F\.]*\'\]')
for fn in fnlist:
try:
df = dicom.dicomfile(fn)
except:
print 'Error while loading '+fn
continue
for tag, vr, v in kvlist:
print fn+':'+tag+' =',
v = replacer.sub(lambda m: df.get_dataelement(m.group()[2:-2]).to_string(), v)
el = df.get_dataelement(tag)
print el.to_string(),'=>',
el = df.add_dataelement(tag)
if vr in [dicom.VR_SL, dicom.VR_SS, dicom.VR_UL, dicom.VR_US,
dicom.VR_AT, dicom.VR_IS]:
if v[0] == '[' and v[-1] == ']': # this is list
v = map(int, v[1:-1].split(','))
el.from_long_values(v)
def ex_dicom_to_pil(fn):
dfo = dicom.dicomfile(fn)
im = dfo.to_pil_image()
im.show()