class GeneralGraphTestCase(unittest.TestCase): def setUp(self): self.graph = RDFGraph() self.curie_map = curie_map.get() def tearDown(self): self.graph = None def test_curieprefixes(self): """ This will ensure that we can create identifiers for all of the defined curie prefixes using the GraphUtils.getNode() method :return: """ # add one id per curie as classes to the graph for p in self.curie_map.keys(): testid = p + ':testme' n = self.graph._getnode(testid) m = "prefix \"" + p + "\" has an error...can't create graph node" self.assertTrue(n is not None, m) return def readGraphFromTurtleFile(self, f): """ This will read the specified file into a graph. A simple parsing test. :param f: :return: """ import os vg = RDFGraph() p = os.path.abspath(f) logger.info("Testing reading turtle file from %s", p) vg.parse(f, format="turtle") logger.info('Found %s graph nodes in %s', len(vg), p) self.assertTrue(len(vg) > 0, "No nodes found in " + p) return def readGraphIntoOWL(self, f): """ test if the ttl can be parsed by owlparser this expects owltools to be accessible from commandline :param f: file of ttl :return: """ import subprocess from subprocess import check_call status = check_call(["owltools", f], stderr=subprocess.STDOUT) # returns zero is success! if status != 0: logger.error('finished verifying with owltools with status %s', status) self.assertTrue(status == 0) return
class GeneralGraphTestCase(unittest.TestCase): def setUp(self): self.graph = RDFGraph() self.curie_map = curie_map.get() def tearDown(self): self.graph = None def test_curieprefixes(self): """ This will ensure that we can create identifiers for all of the defined curie prefixes using the GraphUtils.getNode() method :return: """ # add one id per curie as classes to the graph for p in self.curie_map.keys(): testid = p + ':testme' n = self.graph._getnode(testid) m = "prefix \"" + p + "\" has an error...can't create graph node" self.assertTrue(n is not None, m) return
class GeneralGraphTestCase(unittest.TestCase): def setUp(self): self.graph = RDFGraph() self.curie_map = curie_map.get() def tearDown(self): self.graph = None def test_curieprefixes(self): """ This will ensure that we can create identifiers for all of the defined curie prefixes using the GraphUtils.getNode() method :return: """ # add one id per curie as classes to the graph for p in self.curie_map.keys(): testid = p+':testme' n = self.graph._getnode(testid) m = "prefix \""+p+"\" has an error...can't create graph node" self.assertTrue(n is not None, m) return def readGraphFromTurtleFile(self, f): """ This will read the specified file into a graph. A simple parsing test. :param f: :return: """ import os vg = RDFGraph() p = os.path.abspath(f) logger.info("Testing reading turtle file from %s", p) vg.parse(f, format="turtle") logger.info('Found %s graph nodes in %s', len(vg), p) self.assertTrue(len(vg) > 0, "No nodes found in "+p) return def readGraphIntoOWL(self, f): """ test if the ttl can be parsed by owlparser this expects owltools to be accessible from commandline :param f: file of ttl :return: """ import subprocess from subprocess import check_call status = check_call(["owltools", f], stderr=subprocess.STDOUT) # returns zero is success! if status != 0: logger.error( 'finished verifying with owltools with status %s', status) self.assertTrue(status == 0) return