#!/usr/bin/env python
'''
translating DNA into proteins
'''
#import our homemade module that has the DNA
#translating function
import dnatranslate
#OK, we are using the same DNA file
dnafile = open("AY162388.seq", 'r').readlines()
#opening the file and stripping and joining the lines
sequence = ''
for line in dnafile:
sequence += line.strip()
#call the function in our module and translating the sequence
protein = dnatranslate.translate_dna(sequence)
#output, simple, we could make it better
print sequence, len(sequence)
print
print protein, len(protein)
#!/usr/bin/env python
#import two modules
import dnatranslate
import fasta
import sys
#read the fasta file in one line: open the file, read the contents
#and send it to the fasta reading function
dna = fasta.read_fasta(open(sys.argv[1], 'r').readlines())
for item in dna:
#translate the DNA
protein = dnatranslate.translate_dna(item.sequence)
print item.name
#format and print the protein
print fasta.format_output(protein, 60)
#!/usr/bin/env python
'''
simple to translate dna into proteins
'''
#importing the dnatranslate module
import dnatranslate
import sys
import fasta
#opening and reading the file in one take
dna = fasta.read_fasta(open(sys.argv[1], 'r').readlines())
#iterate over the sequences and translate them
for item in dna:
protein = dnatranslate.translate_dna(item.sequence)
print item.name
print protein
#!/usr/bin/env python
'''
translating DNA into proteins
'''
#import our homemade module that has the DNA
#translating function
import dnatranslate
#OK, we are using the same DNA file
dnafile = open("AY162388.seq", 'r').readlines()
#opening the file and stripping and joining the lines
sequence = ''
for line in dnafile:
sequence += line.strip()
#call the function in our module and translating the sequence
protein = dnatranslate.translate_dna(sequence)
#output, simple, we could make it better
print sequence, len(sequence)
print
print protein, len(protein)
