def run(self, attempId):
logger.debug("shuffling %d of %s", self.partition, self.rdd)
for i, bucket in self._prepare_shuffle(self.rdd):
try:
if marshalable(bucket):
flag, d = b'm', marshal.dumps(bucket)
else:
flag, d = b'p', six.moves.cPickle.dumps(bucket, -1)
except ValueError:
flag, d = b'p', six.moves.cPickle.dumps(bucket, -1)
cd = compress(d)
for tried in range(1, 4):
try:
path = LocalFileShuffle.getOutputFile(
self.shuffleId, self.partition, i,
len(cd) * tried)
with atomic_file(path, bufsize=1024 * 4096) as f:
f.write(flag + struct.pack("I", 5 + len(cd)))
f.write(cd)
break
except IOError as e:
logger.warning("write %s failed: %s, try again (%d)", path,
e, tried)
else:
raise
return LocalFileShuffle.getServerUri()
def run_without_sorted(self, it):
for i, bucket in it:
try:
if marshalable(bucket):
flag, d = b'm', marshal.dumps(bucket)
else:
flag, d = b'p', six.moves.cPickle.dumps(bucket, -1)
except ValueError:
flag, d = b'p', six.moves.cPickle.dumps(bucket, -1)
cd = compress(d)
env.task_stats.bytes_shuffle_write += len(cd)
for tried in range(1, 4):
try:
path = LocalFileShuffle.getOutputFile(
self.shuffleId, self.partition, i,
len(cd) * tried)
with atomic_file(path, bufsize=1024 * 4096) as f:
f.write(flag + struct.pack("I", 5 + len(cd)))
f.write(cd)
break
except IOError as e:
logger.warning("write %s failed: %s, try again (%d)", path,
e, tried)
else:
raise e
return LocalFileShuffle.getServerUri()
def run_task(task_data):
try:
gc.disable()
task, ntry = cPickle.loads(decompress(task_data))
setproctitle('dpark worker %s: run task %s' % (Script, task))
Accumulator.clear()
result = task.run(ntry)
accUpdate = Accumulator.values()
if marshalable(result):
flag, data = 0, marshal.dumps(result)
else:
flag, data = 1, cPickle.dumps(result, -1)
data = compress(data)
if len(data) > TASK_RESULT_LIMIT:
workdir = env.get('WORKDIR')
name = 'task_%s_%s.result' % (task.id, ntry)
path = os.path.join(workdir, name)
f = open(path, 'w')
f.write(data)
f.close()
data = LocalFileShuffle.getServerUri() + '/' + name
flag += 2
return mesos_pb2.TASK_FINISHED, cPickle.dumps((task.id, Success(), (flag, data), accUpdate), -1)
except Exception, e:
import traceback
msg = traceback.format_exc()
return mesos_pb2.TASK_FAILED, cPickle.dumps((task.id, OtherFailure(msg), None, None), -1)
def run_task(task, ntry):
try:
setproctitle('dpark worker %s: run task %s' % (Script, task))
Accumulator.clear()
gc.disable()
result = task.run(ntry)
accUpdate = Accumulator.values()
if marshalable(result):
flag, data = 0, marshal.dumps(result)
else:
flag, data = 1, cPickle.dumps(result, -1)
data = compress(data)
if len(data) > TASK_RESULT_LIMIT:
workdir = env.get('WORKDIR')
name = 'task_%s_%s.result' % (task.id, ntry)
path = os.path.join(workdir, name)
f = open(path, 'w')
f.write(data)
f.close()
data = LocalFileShuffle.getServerUri() + '/' + name
flag += 2
return mesos_pb2.TASK_FINISHED, cPickle.dumps(
(task.id, Success(), (flag, data), accUpdate), -1)
except Exception, e:
import traceback
msg = traceback.format_exc()
return mesos_pb2.TASK_FAILED, cPickle.dumps(
(task.id, OtherFailure(msg), None, None), -1)
def run_task(task_data):
try:
gc.disable()
task, ntry = cPickle.loads(decompress(task_data))
setproctitle('dpark worker %s: run task %s' % (Script, task))
Accumulator.clear()
result = task.run(ntry)
accUpdate = Accumulator.values()
if marshalable(result):
flag, data = 0, marshal.dumps(result)
else:
flag, data = 1, cPickle.dumps(result, -1)
data = compress(data)
if len(data) > TASK_RESULT_LIMIT:
path = LocalFileShuffle.getOutputFile(0, ntry, task.id, len(data))
f = open(path, 'w')
f.write(data)
f.close()
data = '/'.join([LocalFileShuffle.getServerUri()] + path.split('/')[-3:])
flag += 2
return mesos_pb2.TASK_FINISHED, cPickle.dumps((Success(), (flag, data), accUpdate), -1)
except FetchFailed, e:
return mesos_pb2.TASK_FAILED, cPickle.dumps((e, None, None), -1)
def _run(self, task_id):
mem_limit = env.meminfo.mem_limit_soft
t0 = time.time()
logger.debug("run task with shuffle_flag %r" % (self.rddconf, ))
rdd = self.rdd
meminfo = env.meminfo
n = self.partitioner.numPartitions
get_partition = self.partitioner.getPartition
merge_value = self.aggregator.mergeValue
create_combiner = self.aggregator.createCombiner
dumper_cls = SortMergeBucketDumper if self.rddconf.sort_merge else BucketDumper
dumper = dumper_cls(self.shuffleId, self.partition, n, self.rddconf)
buckets = [{} for _ in range(n)]
env.meminfo.ratio = min(float(n) / (n + 1), env.meminfo.ratio)
last_i = 0
for i, item in enumerate(rdd.iterator(self.split)):
try:
try:
k, v = item
except:
raise DparkUserFatalError(
"item of {} should be (k, v) pair, got: {}".format(
rdd.scope.key, item))
bucket = buckets[get_partition(k)]
r = bucket.get(k, None)
if r is not None:
bucket[k] = merge_value(r, v)
else:
bucket[k] = create_combiner(v)
if dpark.conf.MULTI_SEGMENT_DUMP and meminfo.rss > mem_limit:
_log = logger.info if dpark.conf.LOG_ROTATE else logger.debug
_log(
"dump rotate %d with %d kv: mem %d MB, sort limit %d MB, limit %d MB",
env.task_stats.num_dump_rotate + 1, i - last_i,
int(meminfo.rss) >> 20, mem_limit >> 20,
int(meminfo.mem) >> 20)
dumper.dump(buckets, False)
[buckets[j].clear() for j in range(n)]
env.meminfo.after_rotate()
mem_limit = env.meminfo.mem_limit_soft
last_i = i
except ValueError as e:
logger.exception('The ValueError exception: %s at %s', str(e),
str(rdd.scope.api_callsite))
raise
t1 = time.time()
dumper.dump(buckets, True)
dumper.commit(self.aggregator)
del buckets
env.task_stats.bytes_dump += dumper.get_size()
env.task_stats.num_dump_rotate += 1
t = time.time()
env.task_stats.secs_dump += t - t1
env.task_stats.secs_all = t - t0
return LocalFileShuffle.getServerUri()
class ShuffleMapTask(DAGTask):
def __init__(self, stageId, rdd, dep, partition, locs):
DAGTask.__init__(self, stageId)
self.rdd = rdd
self.shuffleId = dep.shuffleId
self.aggregator = dep.aggregator
self.partitioner = dep.partitioner
self.partition = partition
self.split = rdd.splits[partition]
self.locs = locs
def __repr__(self):
return '<ShuffleTask(%d, %d) of %s>' % (self.shuffleId, self.partition, self.rdd)
def __getstate__(self):
d = dict(self.__dict__)
del d['rdd']
return d, dumps(self.rdd)
def __setstate__(self, state):
d, rdd = state
self.__dict__.update(d)
self.rdd = loads(rdd)
def preferredLocations(self):
return self.locs
def run(self, attempId):
logger.debug("shuffling %d of %s", self.partition, self.rdd)
for i, bucket in self.rdd._prepare_shuffle(self.split, self.partitioner, self.aggregator):
try:
if marshalable(bucket):
flag, d = 'm', marshal.dumps(bucket)
else:
flag, d = 'p', cPickle.dumps(bucket, -1)
except ValueError:
flag, d = 'p', cPickle.dumps(bucket, -1)
cd = compress(d)
for tried in range(1, 4):
try:
path = LocalFileShuffle.getOutputFile(self.shuffleId, self.partition, i, len(cd) * tried)
tpath = path + ".%s.%s" % (socket.gethostname(), os.getpid())
f = open(tpath, 'wb', 1024*4096)
f.write(flag + struct.pack("I", 5 + len(cd)))
f.write(cd)
f.close()
os.rename(tpath, path)
break
except IOError, e:
logger.warning("write %s failed: %s, try again (%d)", path, e, tried)
try: os.remove(tpath)
except OSError: pass
else:
raise
return LocalFileShuffle.getServerUri()
def run_task(task_data):
try:
gc.disable()
task, task_try_id = loads(decompress(task_data))
ttid = TTID(task_try_id)
Accumulator.clear()
result = task.run(ttid.ttid)
env.task_stats.bytes_max_rss = resource.getrusage(
resource.RUSAGE_SELF).ru_maxrss * 1024
accUpdate = Accumulator.values()
MutableDict.flush()
if marshalable(result):
try:
flag, data = 0, marshal.dumps(result)
except Exception:
flag, data = 1, cPickle.dumps(result, -1)
else:
flag, data = 1, cPickle.dumps(result, -1)
data = compress(data)
if len(data) > TASK_RESULT_LIMIT:
path = LocalFileShuffle.getOutputFile(0, task.id, ttid.task_try,
len(data))
f = open(path, 'wb')
f.write(data)
f.close()
data = '/'.join([LocalFileShuffle.getServerUri()] +
path.split('/')[-3:])
flag += 2
return TaskState.finished, cPickle.dumps(
((flag, data), accUpdate, env.task_stats), -1)
except FetchFailed as e:
return TaskState.failed, TaskEndReason.fetch_failed, str(
e), cPickle.dumps(e)
except Exception as e:
import traceback
msg = traceback.format_exc()
ename = e.__class__.__name__
fatal_exceptions = (DparkUserFatalError, ArithmeticError, ValueError,
LookupError, SyntaxError, TypeError,
AssertionError)
prefix = "FATAL" if isinstance(e, fatal_exceptions) else "FAILED"
return TaskState.failed, '{}_EXCEPTION_{}'.format(
prefix, ename), msg, cPickle.dumps(e)
finally:
gc.collect()
gc.enable()
def run_task(task_data):
try:
gc.disable()
task, task_try_id = loads(decompress(task_data))
ttid = TTID(task_try_id)
Accumulator.clear()
result = task.run(ttid.ttid)
env.task_stats.bytes_max_rss = resource.getrusage(resource.RUSAGE_SELF).ru_maxrss * 1024
accUpdate = Accumulator.values()
MutableDict.flush()
if marshalable(result):
try:
flag, data = 0, marshal.dumps(result)
except Exception:
flag, data = 1, cPickle.dumps(result, -1)
else:
flag, data = 1, cPickle.dumps(result, -1)
data = compress(data)
if len(data) > TASK_RESULT_LIMIT:
path = LocalFileShuffle.getOutputFile(0, task.id, ttid.task_try, len(data))
f = open(path, 'wb')
f.write(data)
f.close()
data = '/'.join(
[LocalFileShuffle.getServerUri()] + path.split('/')[-3:]
)
flag += 2
return TaskState.finished, cPickle.dumps(((flag, data), accUpdate, env.task_stats), -1)
except FetchFailed as e:
return TaskState.failed, TaskEndReason.fetch_failed, str(e), cPickle.dumps(e)
except Exception as e:
import traceback
msg = traceback.format_exc()
ename = e.__class__.__name__
fatal_exceptions = (DparkUserFatalError, ArithmeticError,
ValueError, LookupError, SyntaxError,
TypeError, AssertionError)
prefix = "FATAL" if isinstance(e, fatal_exceptions) else "FAILED"
return TaskState.failed, '{}_EXCEPTION_{}'.format(prefix, ename), msg, cPickle.dumps(e)
finally:
gc.collect()
gc.enable()
def run_task(task_data):
try:
gc.disable()
task, task_try_id = loads(decompress(task_data))
ttid = TTID(task_try_id)
Accumulator.clear()
result = task.run(ttid.ttid)
env.task_stats.bytes_max_rss = resource.getrusage(
resource.RUSAGE_SELF).ru_maxrss * 1024
accUpdate = Accumulator.values()
MutableDict.flush()
if marshalable(result):
try:
flag, data = 0, marshal.dumps(result)
except Exception:
flag, data = 1, cPickle.dumps(result, -1)
else:
flag, data = 1, cPickle.dumps(result, -1)
data = compress(data)
if len(data) > TASK_RESULT_LIMIT:
path = LocalFileShuffle.getOutputFile(0, task.id, ttid.task_try,
len(data))
f = open(path, 'wb')
f.write(data)
f.close()
data = '/'.join([LocalFileShuffle.getServerUri()] +
path.split('/')[-3:])
flag += 2
return 'TASK_FINISHED', cPickle.dumps(
(Success(), (flag, data), accUpdate, env.task_stats), -1)
except FetchFailed as e:
return 'TASK_FAILED', cPickle.dumps((e, None, None, None), -1)
except:
import traceback
msg = traceback.format_exc()
return 'TASK_FAILED', cPickle.dumps(
(OtherFailure(msg), None, None, None), -1)
finally:
gc.collect()
gc.enable()
def run_with_sorted(self, it):
serializer = GroupByAutoBatchedSerializer(
) if self.iter_values else AutoBatchedSerializer()
for i, bucket in it:
for tried in range(1, 4):
try:
path = LocalFileShuffle.getOutputFile(
self.shuffleId, self.partition, i)
with atomic_file(path, bufsize=1024 * 4096) as f:
items = sorted(bucket.items(), key=lambda x: x[0])
serializer.dump_stream(items, f)
env.task_stats.bytes_shuffle_write += f.tell()
break
except IOError as e:
logger.warning("write %s failed: %s, try again (%d)", path,
e, tried)
else:
raise e
return LocalFileShuffle.getServerUri()
def run_task(task_data):
try:
gc.disable()
task, ntry = loads(decompress(task_data))
Accumulator.clear()
result = task.run(ntry)
accUpdate = Accumulator.values()
MutableDict.flush()
if marshalable(result):
try:
flag, data = 0, marshal.dumps(result)
except Exception as e:
flag, data = 1, cPickle.dumps(result, -1)
else:
flag, data = 1, cPickle.dumps(result, -1)
data = compress(data)
if len(data) > TASK_RESULT_LIMIT:
path = LocalFileShuffle.getOutputFile(0, ntry, task.id, len(data))
f = open(path, 'w')
f.write(data)
f.close()
data = '/'.join(
[LocalFileShuffle.getServerUri()] + path.split('/')[-3:]
)
flag += 2
return 'TASK_FINISHED', cPickle.dumps(
(Success(), (flag, data), accUpdate), -1)
except FetchFailed as e:
return 'TASK_FAILED', cPickle.dumps((e, None, None), -1)
except:
import traceback
msg = traceback.format_exc()
return 'TASK_FAILED', cPickle.dumps(
(OtherFailure(msg), None, None), -1)
finally:
close_mfs()
gc.collect()
gc.enable()
class ShuffleMapTask(DAGTask):
def __init__(self, stageId, rdd, dep, partition, locs):
DAGTask.__init__(self, stageId)
self.rdd = rdd
self.shuffleId = dep.shuffleId
self.aggregator = dep.aggregator
self.partitioner = dep.partitioner
self.partition = partition
self.split = rdd.splits[partition]
self.locs = locs
def __repr__(self):
return '<ShuffleTask(%d, %d) of %s>' % (self.shuffleId, self.partition,
self.rdd)
def preferredLocations(self):
return self.locs
def run(self, attempId):
logger.debug("shuffling %d of %s", self.partition, self.rdd)
numOutputSplits = self.partitioner.numPartitions
getPartition = self.partitioner.getPartition
mergeValue = self.aggregator.mergeValue
createCombiner = self.aggregator.createCombiner
buckets = [{} for i in range(numOutputSplits)]
for k, v in self.rdd.iterator(self.split):
bucketId = getPartition(k)
bucket = buckets[bucketId]
r = bucket.get(k, None)
if r is not None:
bucket[k] = mergeValue(r, v)
else:
bucket[k] = createCombiner(v)
for i in range(numOutputSplits):
try:
if marshalable(buckets[i]):
flag, d = 'm', marshal.dumps(buckets[i])
else:
flag, d = 'p', cPickle.dumps(buckets[i], -1)
except ValueError:
flag, d = 'p', cPickle.dumps(buckets[i], -1)
cd = compress(d)
for tried in range(1, 4):
try:
path = LocalFileShuffle.getOutputFile(
self.shuffleId, self.partition, i,
len(cd) * tried)
tpath = path + ".%s.%s" % (socket.gethostname(),
os.getpid())
f = open(tpath, 'wb', 1024 * 4096)
f.write(flag + struct.pack("I", 5 + len(cd)))
f.write(cd)
f.close()
os.rename(tpath, path)
break
except IOError, e:
logger.warning("write %s failed: %s, try again (%d)", path,
e, tried)
try:
os.remove(tpath)
except OSError:
pass
else:
raise
return LocalFileShuffle.getServerUri()
if marshalable(result):
try:
flag, data = 0, marshal.dumps(result)
except Exception, e:
flag, data = 1, cPickle.dumps(result, -1)
else:
flag, data = 1, cPickle.dumps(result, -1)
data = compress(data)
if len(data) > TASK_RESULT_LIMIT:
path = LocalFileShuffle.getOutputFile(0, ntry, task.id, len(data))
f = open(path, 'w')
f.write(data)
f.close()
data = '/'.join([LocalFileShuffle.getServerUri()] +
path.split('/')[-3:])
flag += 2
return mesos_pb2.TASK_FINISHED, cPickle.dumps(
(Success(), (flag, data), accUpdate), -1)
except FetchFailed, e:
return mesos_pb2.TASK_FAILED, cPickle.dumps((e, None, None), -1)
except:
import traceback
msg = traceback.format_exc()
return mesos_pb2.TASK_FAILED, cPickle.dumps(
(OtherFailure(msg), None, None), -1)
finally:
gc.collect()
gc.enable()
class ShuffleMapTask(DAGTask):
def __init__(self, stageId, rdd, dep, partition, locs):
DAGTask.__init__(self, stageId)
self.rdd = rdd
self.shuffleId = dep.shuffleId
self.aggregator = dep.aggregator
self.partitioner = dep.partitioner
self.partition = partition
self.split = rdd.splits[partition]
self.locs = locs
def __repr__(self):
shuffleId = getattr(self, 'shuffleId', None)
partition = getattr(self, 'partition', None)
rdd = getattr(self, 'rdd', None)
return '<ShuffleTask(%s, %s) of %s>' % (shuffleId, partition, rdd)
def __getstate__(self):
d = dict(self.__dict__)
del d['rdd']
del d['split']
return d, dumps(self.rdd), dumps(self.split)
def __setstate__(self, state):
d, rdd, split = state
self.__dict__.update(d)
self.rdd = loads(rdd)
self.split = loads(split)
def preferredLocations(self):
return self.locs
def _prepare_shuffle(self, rdd):
split = self.split
numOutputSplits = self.partitioner.numPartitions
getPartition = self.partitioner.getPartition
mergeValue = self.aggregator.mergeValue
createCombiner = self.aggregator.createCombiner
buckets = [{} for i in range(numOutputSplits)]
for k, v in rdd.iterator(split):
bucketId = getPartition(k)
bucket = buckets[bucketId]
r = bucket.get(k, None)
if r is not None:
bucket[k] = mergeValue(r, v)
else:
bucket[k] = createCombiner(v)
return enumerate(buckets)
def run(self, attempId):
logger.debug("shuffling %d of %s", self.partition, self.rdd)
for i, bucket in self._prepare_shuffle(self.rdd):
try:
if marshalable(bucket):
flag, d = 'm', marshal.dumps(bucket)
else:
flag, d = 'p', cPickle.dumps(bucket, -1)
except ValueError:
flag, d = 'p', cPickle.dumps(bucket, -1)
cd = compress(d)
for tried in range(1, 4):
try:
path = LocalFileShuffle.getOutputFile(
self.shuffleId, self.partition, i,
len(cd) * tried)
with atomic_file(path, bufsize=1024 * 4096) as f:
f.write(flag + struct.pack("I", 5 + len(cd)))
f.write(cd)
break
except IOError, e:
logger.warning("write %s failed: %s, try again (%d)", path,
e, tried)
else:
raise
return LocalFileShuffle.getServerUri()
if marshalable(result):
try:
flag, data = 0, marshal.dumps(result)
except Exception, e:
flag, data = 1, cPickle.dumps(result, -1)
else:
flag, data = 1, cPickle.dumps(result, -1)
data = compress(data)
if len(data) > TASK_RESULT_LIMIT:
path = LocalFileShuffle.getOutputFile(0, ntry, task.id, len(data))
f = open(path, 'w')
f.write(data)
f.close()
data = '/'.join([LocalFileShuffle.getServerUri()] + path.split('/')[-3:])
flag += 2
return mesos_pb2.TASK_FINISHED, cPickle.dumps((Success(), (flag, data), accUpdate), -1)
except FetchFailed, e:
return mesos_pb2.TASK_FAILED, cPickle.dumps((e, None, None), -1)
except :
import traceback
msg = traceback.format_exc()
return mesos_pb2.TASK_FAILED, cPickle.dumps((OtherFailure(msg), None, None), -1)
finally:
setproctitle('dpark worker: idle')
gc.collect()
gc.enable()
def init_env(args):
if marshalable(result):
try:
flag, data = 0, marshal.dumps(result)
except Exception, e:
flag, data = 1, cPickle.dumps(result, -1)
else:
flag, data = 1, cPickle.dumps(result, -1)
data = compress(data)
if len(data) > TASK_RESULT_LIMIT:
path = LocalFileShuffle.getOutputFile(0, ntry, task.id, len(data))
f = open(path, 'w')
f.write(data)
f.close()
data = '/'.join([LocalFileShuffle.getServerUri()] + path.split('/')[-3:])
flag += 2
return mesos_pb2.TASK_FINISHED, cPickle.dumps((Success(), (flag, data), accUpdate), -1)
except FetchFailed, e:
return mesos_pb2.TASK_FAILED, cPickle.dumps((e, None, None), -1)
except :
import traceback
msg = traceback.format_exc()
return mesos_pb2.TASK_FAILED, cPickle.dumps((OtherFailure(msg), None, None), -1)
finally:
setproctitle('dpark worker: idle')
gc.collect()
gc.enable()
def init_env(args):
if marshalable(result):
try:
flag, data = 0, marshal.dumps(result)
except Exception, e:
flag, data = 1, cPickle.dumps(result, -1)
else:
flag, data = 1, cPickle.dumps(result, -1)
data = compress(data)
if len(data) > TASK_RESULT_LIMIT:
path = LocalFileShuffle.getOutputFile(0, ntry, task.id, len(data))
f = open(path, "w")
f.write(data)
f.close()
data = "/".join([LocalFileShuffle.getServerUri()] + path.split("/")[-3:])
flag += 2
return mesos_pb2.TASK_FINISHED, cPickle.dumps((Success(), (flag, data), accUpdate), -1)
except FetchFailed, e:
return mesos_pb2.TASK_FAILED, cPickle.dumps((e, None, None), -1)
except:
import traceback
msg = traceback.format_exc()
return mesos_pb2.TASK_FAILED, cPickle.dumps((OtherFailure(msg), None, None), -1)
finally:
gc.collect()
gc.enable()
