def set_scores(self,
scoring_function=Functions.analyze_structure_mfe_rnafold):
self.scores.update(
Functions.appendLabelToDict(
scoring_function(filename=self.structurefile,
project_dir=self.solution.project_dir),
self.label))
def set_scores(self,
scoring_function=Functions.analyze_duplex_structure_rnafold
):
self.scores.update(
Functions.appendLabelToDict(
scoring_function(seq1=self.rnaMolecule1seq,
seq2=self.rnaMolecule2seq,
filename=self.duplexFile,
project_dir=self.solution.project_dir),
self.label))
def set_scores(self, scoring_function=Functions.analyze_duplex_structure):
self.scores.update(
Functions.appendLabelToDict(
scoring_function(self.rnaMolecule1seq, self.rnaMolecule2seq,
self.duplexFile), self.label))
pass
def set_scores(self, scoring_function=Functions.analyze_duplex_mfe):
self.scores.update(
Functions.appendLabelToDict(scoring_function(self.duplexFile),
self.label))
def set_scores(self, scoring_function=Functions.analyze_pwm_score):
self.scores = Functions.appendLabelToDict(
scoring_function(self.sequence, self.pwm), self.label)
def set_scores(self, scoring_function=Functions.analyze_structure_prob):
#compute structure
self.scores.update(
Functions.appendLabelToDict(
scoring_function(self.sequence, self.structurefile,
self.window, self.acc_region), self.label))
def set_scores(self, scoring_function=Functions.analyze_structure_ds):
self.scores.update(
Functions.appendLabelToDict(scoring_function(self.structurefile),
self.label))
def set_scores(self, scoring_function=Functions.analyze_ntcontent):
self.scores = Functions.appendLabelToDict(
scoring_function(self.sequence), self.label)