params.indexing.two_color.avg_energy = parameters.ENERGY_LOW * .5 + parameters.ENERGY_HIGH * .5
params.indexing.stills.refine_all_candidates = False
params.indexing.stills.refine_candidates_with_known_symmetry = False
params.indexing.refinement_protocol.mode = "ignore"
params.indexing.stills.rmsd_min_px = 20000
params.indexing.stills.candidate_outlier_rejection = False
params.indexing.refinement_protocol.n_macro_cycles = 1
params.indexing.multiple_lattice_search.max_lattices = 1
params.indexing.basis_vector_combinations.max_refine = 10000000000
#params.indexing.basis_vector_combinations.max_combinations = 150
params.refinement.reflections.outlier.algorithm = "null"
# ====================================================================
BEAM_LOW = BeamFactory.simple_directional((0, 0, 1),
parameters.WAVELEN_LOW)
BEAM_HIGH = BeamFactory.simple_directional((0, 0, 1),
parameters.WAVELEN_HIGH)
if __name__ == "__main__":
show_hits = False
if not HAS_TWO_COLOR:
print("Need to install the module cxi_xdr_xes")
sys.exit()
pickle_fname = sys.argv[1]
image_fname = sys.argv[2]
print('Loading reflections')
with open(pickle_fname, 'r') as f:
found_refl = cPickle.load(f)
refl_select = spot_utils.ReflectionSelect(found_refl)
def nanoBragg_constructor_beam(self):
"""dumb necessity FIXME please"""
beam = BeamFactory.from_dict(self.xray_beams[0].to_dict())
beam.set_wavelength(beam.get_wavelength() * 1e10)
return beam
def _get_beam(self):
return BeamFactory.simple_directional((0, 0, 1), WAVELEN_LOW)
def _beam(self):
"""
Create the beam model
"""
configuration = self.header["configuration"]
return BeamFactory.simple(configuration["wavelength"])
def test_beam_self_serialization():
beam = Beam()
assert beam == BeamFactory.from_dict(beam.to_dict())
def dummy_beam():
return BeamFactory.simple(1.0)