def get_table_dependencies(self):
""" Return dependencies of Sequana.
"""
dep_list = easydev.get_dependencies('sequana')
# if installed with conda, this will be empty
if len(dep_list) == 0:
return ""
project_name = list()
version = list()
link = list()
pypi = 'https://pypi.python.org/pypi/{0}'
for dep in dep_list:
version.append(dep.version)
project_name.append(dep.project_name)
link.append(pypi.format(dep.project_name))
df = pd.DataFrame({'package': project_name, 'version': version,
'link': link})
df['sort'] = df['package'].str.lower()
df.sort_values(by='sort', axis=0, inplace=True)
df.drop('sort', axis=1, inplace=True)
datatable = DataTable(df, 'dep')
datatable.datatable.datatable_options = {'paging': 'false',
'bFilter': 'false',
'bInfo': 'false',
'bSort': 'false'}
datatable.datatable.set_links_to_column('link', 'package')
js = datatable.create_javascript_function()
html = datatable.create_datatable()
return js + '\n' + html
def get_table_dependencies(self):
""" Return dependencies of Sequana.
"""
dep_list = easydev.get_dependencies('sequana')
# if installed with conda, this will be empty
if len(dep_list) == 0:
return ""
project_name = list()
version = list()
link = list()
pypi = 'https://pypi.python.org/pypi/{0}'
for dep in dep_list:
version.append(dep.version)
project_name.append(dep.project_name)
link.append(pypi.format(dep.project_name))
df = pd.DataFrame({
'package': project_name,
'version': version,
'link': link
})
df['sort'] = df['package'].str.lower()
df.sort_values(by='sort', axis=0, inplace=True)
df.drop('sort', axis=1, inplace=True)
datatable = DataTable(df, 'dep')
datatable.datatable.datatable_options = {
'paging': 'false',
'bFilter': 'false',
'bInfo': 'false',
'bSort': 'false'
}
datatable.datatable.set_links_to_column('link', 'package')
js = datatable.create_javascript_function()
html = datatable.create_datatable()
return js + '\n' + html
def get_table_dependencies(self):
"""Returns dependencies of the pipeline into a HTML/XML table
dependencies are the python dependencies as returned by pkg_resource.
additionally, r dependencies added in :attr:`dependencies` are also added.
"""
dependencies = easydev.get_dependencies('cno')
names = [x.project_name for x in dependencies]
versions = [x.version for x in dependencies]
links = ["""https://pypi.python.org/pypi/%s"""%p for p in names]
if len(self.Rdependencies):
self._rpm = RPackageManager()
for package in self.Rdependencies:
names.append(package)
versions.append(self._rpm.get_package_version(package))
links.append("http://www.cellnopt.org")
df = pd.DataFrame({
'package': ["""<a href="%s">%s</a>"""%(links[i],p) for i,p in enumerate(names)],
'version':versions})
table = HTMLTable(df, name="dependencies", escape=False)
from cno.misc.dependencies import plot_dependencies
c = plot_dependencies(show=False, filename=self._make_filename('dependencies.svg'))
return table
def get_table_dependencies(self):
"""Returns dependencies of the pipeline as an HTML/XML table
The dependencies are the python dependencies as returned by
pkg_resource module.
"""
dependencies = easydev.get_dependencies(self.pkgname)
# TODO: Could re-use new method in HTMLTable for adding href
# but needs some extra work in the add_href method.
names = [x.project_name for x in dependencies]
versions = [x.version for x in dependencies]
links = ["""https://pypi.python.org/pypi/%s""" % p for p in names]
df = pd.DataFrame({
'package': ["""<a href="%s">%s</a>""" % (links[i], p)
for i, p in enumerate(names)],
'version': versions})
table = HTMLTable(df, name="dependencies", escape=False)
table.sort('package')
return table
def get_table_dependencies(self):
"""Returns dependencies of the pipeline as an HTML/XML table
The dependencies are the python dependencies as returned by
pkg_resource module.
"""
dependencies = easydev.get_dependencies(self.pkgname)
# TODO: Could re-use new method in HTMLTable for adding href
# but needs some extra work in the add_href method.
names = [x.project_name for x in dependencies]
versions = [x.version for x in dependencies]
links = ["""https://pypi.python.org/pypi/%s""" % p for p in names]
df = pd.DataFrame({
'package': [
"""<a href="%s">%s</a>""" % (links[i], p)
for i, p in enumerate(names)
],
'version':
versions
})
table = HTMLTable(df, name="dependencies", escape=False)
table.sort('package')
return table
def _get_report_version():
# cannot use from report import version since it imports the module (not the
# package) due to identical name. Hopefully, easydev does help:
deps = easydev.get_dependencies('reports')
index = [x.project_name for x in deps].index('reports')
return deps[index].version
def _get_report_version():
# cannot use from report import version since it imports the module (not the
# package) due to identical name. Hopefully, easydev does help:
deps = easydev.get_dependencies('reports')
index = [x.project_name for x in deps].index('reports')
return deps[index].version