from edc_action_item import Action, site_action_items, HIGH_PRIORITY
INFANT_COVID_SCREENING_ACTION = 'update-infant-covid-results'
class InfantCovidScreeningAction(Action):
name = INFANT_COVID_SCREENING_ACTION
display_name = 'Update Infant Covid Screening Test Results'
reference_model = 'td_infant.infantcovidscreening'
admin_site_name = 'td_infant_admin'
priority = HIGH_PRIORITY
def close_action_item_on_save(self):
"""Returns True if action item for \'action_identifier\'
is to be closed on post_save.
"""
return self.reference_model_obj.covid_results != 'pending'
site_action_items.register(InfantCovidScreeningAction)
from edc_action_item import Action, site_action_items
from edc_constants.constants import HIGH_PRIORITY
SUBJECT_LOCATOR_ACTION = "submit-subject-locator"
class SubjectLocatorAction(Action):
name = SUBJECT_LOCATOR_ACTION
display_name = "Submit Subject Locator"
reference_model = "edc_locator.subjectlocator"
show_link_to_changelist = True
admin_site_name = "edc_locator_admin"
priority = HIGH_PRIORITY
singleton = True
site_action_items.register(SubjectLocatorAction)
from .constants import FOLLOWUP_EXAMINATION_ACTION
class FollowupExaminationAction(Action):
name = FOLLOWUP_EXAMINATION_ACTION
priority = HIGH_PRIORITY
display_name = "Followup Exam: AE"
reference_model = "meta_subject.followupexamination"
show_on_dashboard = True
create_by_user = False
def get_next_actions(self):
next_actions = []
if (self.reference_obj.symptoms_g3.exclude(name=NONE).count() > 0 or
self.reference_obj.symptoms_g4.exclude(name=NONE).count() > 0
or self.reference_obj.any_other_problems_sae_grade in [
GRADE3, GRADE4
]) and not is_baseline(self.reference_obj.subject_visit):
next_actions.append(AE_INITIAL_ACTION)
return next_actions
site_action_items.register(BloodResultsFbcAction)
site_action_items.register(BloodResultsEgfrAction)
site_action_items.register(BloodResultsLipidAction)
site_action_items.register(BloodResultsLftAction)
site_action_items.register(BloodResultsRftAction)
site_action_items.register(BloodResultsGluAction)
site_action_items.register(BloodResultsHba1cAction)
site_action_items.register(FollowupExaminationAction)
# add next Recurrence of Symptoms if YES
next_actions = self.append_to_next_if_required(
next_actions=next_actions,
action_name=RECURRENCE_OF_SYMPTOMS_ACTION,
required=self.reference_obj.ae_cm_recurrence == YES,
)
return next_actions
class RecurrenceOfSymptomsAction(ActionWithNotification):
name = RECURRENCE_OF_SYMPTOMS_ACTION
display_name = "Submit Recurrence of Symptoms Report"
notification_display_name = "Recurrence of Symptoms Report"
parent_action_names = [AE_INITIAL_ACTION]
reference_model = "ambition_ae.recurrencesymptom"
show_link_to_changelist = True
admin_site_name = "ambition_ae_admin"
priority = HIGH_PRIORITY
create_by_user = False
help_text = "This document is triggered by AE Initial"
site_action_items.register(AeFollowupAction)
site_action_items.register(AeInitialAction)
site_action_items.register(AeSusarAction)
site_action_items.register(AeTmgAction)
site_action_items.register(DeathReportAction)
site_action_items.register(DeathReportTmgAction)
site_action_items.register(DeathReportTmgSecondAction)
site_action_items.register(RecurrenceOfSymptomsAction)
from edc_action_item import Action, site_action_items, HIGH_PRIORITY
SUBJECT_LOCATOR_ACTION = 'submit-subject-locator'
class SubjectLocatorAction(Action):
name = SUBJECT_LOCATOR_ACTION
display_name = 'Submit Subject Locator'
reference_model = 'edc_locator.subjectlocator'
show_link_to_changelist = True
admin_site_name = 'edc_locator_admin'
priority = HIGH_PRIORITY
singleton = True
site_action_items.register(SubjectLocatorAction)
try:
self.action_item_model_cls().objects.get(
parent_action_item=self.related_action_item,
related_action_item=self.related_action_item,
action_type__name=self.name,
)
except ObjectDoesNotExist:
pass
except MultipleObjectsReturned:
# because more than one action item has the same
# parent_action_item and related_action_item. this
# only occurs for older data.
pass
else:
if (self.action_item_model_cls().objects.filter(
related_action_item=self.related_action_item,
action_type__name=self.name,
).count() < 2):
if (self.reference_obj.cause_of_death !=
self.related_action_item.reference_obj.cause_of_death):
next_actions = ["self"]
return next_actions
site_action_items.register(DeathReportAction)
site_action_items.register(DeathReportTmgAction)
site_action_items.register(AeFollowupAction)
site_action_items.register(AeInitialAction)
site_action_items.register(AeSusarAction)
site_action_items.register(AeTmgAction)
action_type__name='submit-subject-offstudy')
try:
potlako_deathreport_cls.objects.get(
subject_identifier=subject_identifier)
if not offstudy:
actions = [SubjectOffStudyAction]
except ObjectDoesNotExist:
pass
return actions
class SubjectOffStudyAction(Action):
name = SUBJECT_OFFSTUDY_ACTION
display_name = 'Submit Subject Offstudy'
reference_model = 'potlako_prn.subjectoffstudy'
show_link_to_changelist = True
show_link_to_add = True
admin_site_name = 'potlako_prn_admin'
priority = HIGH_PRIORITY
singleton = True
def get_next_actions(self):
actions = [PotlakoCoordinatorAction]
return actions
site_action_items.register(DeathReportAction)
site_action_items.register(SubjectOffStudyAction)
site_action_items.register(PotlakoCoordinatorAction)
def get_next_actions(self):
actions = []
# resave visit to update metadata
self.reference_model_obj.maternal_visit.save()
if self.reference_model_obj.number_of_gestations != '1':
actions = [CaregiverOffStudyAction]
else:
self.delete_if_new(CaregiverOffStudyAction)
return actions
class MaternalCovidScreeningAction(Action):
name = MATERNAL_COVID_SCREENING_ACTION
display_name = 'Update Maternal Covid Screening Test Results'
reference_model = 'flourish_caregiver.maternalcovidscreening'
admin_site_name = 'flourish_caregiver_admin'
priority = HIGH_PRIORITY
def close_action_item_on_save(self):
"""Returns True if action item for \'action_identifier\'
is to be closed on post_save.
"""
return self.reference_model_obj.covid_results != 'pending'
site_action_items.register(CaregiverLocatorAction)
site_action_items.register(MaternalUltrasoundAction)
def get_next_actions(self):
actions = []
trainee_deathreport_cls = django_apps.get_model(
'trainee_prn.deathreport')
subject_identifier = self.reference_model_obj.subject_identifier
try:
trainee_deathreport_cls.objects.get(
subject_identifier=subject_identifier)
actions = [SubjectOffStudyAction]
except ObjectDoesNotExist:
pass
return actions
class SubjectOffStudyAction(Action):
name = SUBJECT_OFFSTUDY_ACTION
display_name = 'Submit Subject Offstudy'
reference_model = 'trainee_prn.subjectoffstudy'
show_link_to_changelist = True
show_link_to_add = True
admin_site_name = 'trainee_prn_admin'
priority = HIGH_PRIORITY
singleton = True
site_action_items.register(DeathReportAction)
site_action_items.register(SubjectOffStudyAction)
from edc_action_item import Action, site_action_items
from edc_constants.constants import HIGH_PRIORITY
from .constants import RECONSENT_ACTION
class ReconsentAction(Action):
name = RECONSENT_ACTION
display_name = "Re-consent participant"
reference_model = "mapitio_consent.subjectreconsent"
priority = HIGH_PRIORITY
show_on_dashboard = True
show_link_to_changelist = True
admin_site_name = "mapitio_consent_admin"
create_by_user = False
singleton = True
instructions = (
"Participant must be re-consented as soon as able. "
"Participant's ICF was initially completed by next-of-kin.")
def reopen_action_item_on_change(self):
return False
site_action_items.register(ReconsentAction)
display_name = 'Submit Maternal Delivery'
reference_model = 'td_maternal.maternallabourdel'
admin_site_name = 'td_maternal_admin'
priority = HIGH_PRIORITY
def get_next_actions(self):
actions = []
if self.reference_model_obj.live_infants_to_register != 1:
actions = [MaternalOffStudyAction]
return actions
class MaternalCovidScreeningAction(Action):
name = MATERNAL_COVID_SCREENING_ACTION
display_name = 'Update Maternal Covid Screening Test Results'
reference_model = 'td_maternal.maternalcovidscreening'
admin_site_name = 'td_maternal_admin'
priority = HIGH_PRIORITY
def close_action_item_on_save(self):
"""Returns True if action item for \'action_identifier\'
is to be closed on post_save.
"""
return self.reference_model_obj.covid_results != 'pending'
site_action_items.register(MaternalCovidScreeningAction)
site_action_items.register(MaternalLabourDeliveryAction)
site_action_items.register(MaternalLocatorAction)
site_action_items.register(MaternalUltrasoundAction)
from edc_action_item import Action, site_action_items, HIGH_PRIORITY
CHILDCONTINUEDCONSENT_STUDY_ACTION = 'submit-childcontinuedconsent-study'
CHILDASSENT_ACTION = 'submit-childassent'
class ChildContinuedConsentAction(Action):
name = CHILDCONTINUEDCONSENT_STUDY_ACTION
display_name = 'Submit Child Continued Consent'
reference_model = 'flourish_child.childcontinuedconsent'
admin_site_name = 'flourish_child_admin'
priority = HIGH_PRIORITY
singleton = True
class ChildAssentAction(Action):
name = CHILDASSENT_ACTION
display_name = 'Submit Child Assent'
reference_model = 'flourish_child.childassent'
admin_site_name = 'flourish_child_admin'
priority = HIGH_PRIORITY
singleton = True
site_action_items.register(ChildContinuedConsentAction)
site_action_items.register(ChildAssentAction)
class BaseBloodResultsAction(Action):
name = None
display_name = None
reference_model = None
priority = HIGH_PRIORITY
show_on_dashboard = True
create_by_user = False
def reopen_action_item_on_change(self):
return False
def get_next_actions(self):
next_actions = []
if (self.reference_obj.results_abnormal == YES
and self.reference_obj.results_reportable == YES
and not is_baseline(self.reference_obj_has_changed)):
# AE for reportable result, though not on DAY1.0
next_actions = [AE_INITIAL_ACTION]
return next_actions
class BloodResultsLipidAction(BaseBloodResultsAction):
name = BLOOD_RESULTS_LIPID_ACTION
display_name = "Reportable result: LIPIDS"
reference_model = "mocca_subject.bloodresultslipid"
site_action_items.register(BloodResultsLipidAction)
site_action_items.register(SubjectVisitMissedAction)
action_item_cls = django_apps.get_model(
'edc_action_item.actionitem')
subject_identifier = self.reference_model_obj.subject_identifier
offstudy = action_item_cls.objects.filter(
subject_identifier=subject_identifier,
action_type__name=CAREGIVEROFF_STUDY_ACTION)
try:
caregiver_deathreport_cls.objects.get(
subject_identifier=subject_identifier)
if not offstudy:
actions = [CaregiverOffStudyAction]
except ObjectDoesNotExist:
pass
return actions
class ChildDeathReportAction(Action):
name = CHILD_DEATH_REPORT_ACTION
display_name = 'Submit Child Death Report'
reference_model = 'flourish_prn.childdeathreport'
admin_site_name = 'flourish_prn_admin'
priority = HIGH_PRIORITY
singleton = True
site_action_items.register(CaregiverOffStudyAction)
site_action_items.register(ChildOffStudyAction)
site_action_items.register(CaregiverDeathReportAction)
site_action_items.register(ChildDeathReportAction)
name = STUDY_TERMINATION_CONCLUSION_ACTION_W10
display_name = "Submit W10 Study Termination/Conclusion Report"
notification_display_name = "W10 Study Termination/Conclusion Report"
parent_action_names = [DEATH_REPORT_ACTION]
reference_model = "ambition_prn.studyterminationconclusionw10"
show_link_to_changelist = True
admin_site_name = "ambition_prn_admin"
priority = HIGH_PRIORITY
class ProtocolDeviationViolationAction(BaseProtocolDeviationViolationAction):
reference_model = "ambition_prn.protocoldeviationviolation"
admin_site_name = "ambition_prn_admin"
site_action_items.register(ProtocolDeviationViolationAction)
site_action_items.register(StudyTerminationConclusionAction)
site_action_items.register(StudyTerminationConclusionW10Action)
# class DeathReportAction(ActionWithNotification):
# name = DEATH_REPORT_ACTION
# display_name = "Submit Death Report"
# notification_display_name = "Death Report"
# reference_model = "ambition_prn.deathreport"
# parent_action_names = [AE_INITIAL_ACTION, AE_FOLLOWUP_ACTION]
# show_link_to_changelist = True
# show_link_to_add = True
# admin_site_name = "ambition_prn_admin"
# priority = HIGH_PRIORITY
# singleton = True
# dirty_fields = ["cause_of_death"]
f"action_item_display_name.html")
title = getattr(self.reference_obj, "title", "")
visit_schedule = getattr(self.reference_obj, "visit_schedule", "")
modified = getattr(self.reference_obj, "modified", None)
auto = "auto" if getattr(self.reference_obj, "rule_generated",
False) else ""
try:
query_priority = self.reference_obj.get_query_priority_display()
except AttributeError:
query_priority = NORMAL
context = dict(
HIGH_PRIORITY=HIGH_PRIORITY,
auto=auto,
category=self.get_category(),
modified=modified,
object=self.reference_obj,
query_priority=query_priority,
title=title,
utcnow=get_utcnow(),
visit_schedule=visit_schedule,
)
form_and_numbers_to_string = getattr(self.reference_obj,
"form_and_numbers_to_string",
None)
if form_and_numbers_to_string:
context.update(form_and_numbers=form_and_numbers_to_string())
return render_to_string(template_name, context=context)
site_action_items.register(DataQueryAction)
action_cls=site_action_items.get(DEATH_REPORT_ACTION),
required=deceased)
# add next AeTmgAction if G4
next_actions = self.append_to_next_if_required(
next_actions=next_actions,
action_cls=AeTmgAction,
required=self.model_obj.ae_grade == GRADE4)
# add next Recurrence of Symptoms if YES
next_actions = self.append_to_next_if_required(
next_actions=next_actions,
action_cls=site_action_items.get(RECURRENCE_OF_SYMPTOMS_ACTION),
required=self.model_obj.ae_cm_recurrence == YES)
return next_actions
class RecurrenceOfSymptomsAction(Action):
name = RECURRENCE_OF_SYMPTOMS_ACTION
display_name = 'Submit Recurrence of Symptoms Report'
model = 'ambition_ae.recurrencesymptom'
show_link_to_changelist = True
admin_site_name = 'ambition_ae_admin'
priority = HIGH_PRIORITY
create_by_user = False
help_text = 'This document is triggered by AE Initial'
site_action_items.register(AeInitialAction)
site_action_items.register(AeTmgAction)
site_action_items.register(AeFollowupAction)
site_action_items.register(RecurrenceOfSymptomsAction)
from edc_action_item import Action, site_action_items, HIGH_PRIORITY
from edc_locator.action_items import SubjectLocatorAction
MATERNALOFF_STUDY_ACTION = 'submit-caregiver-study'
PRE_FLOURISH_CAREGIVER_LOCATOR_ACTION = 'pre-flourish-submit-caregiver-locator'
class MaternalOffStudyAction(Action):
name = MATERNALOFF_STUDY_ACTION
display_name = 'Submit Caregiver Offstudy'
reference_model = 'pre_flourish.maternaloffstudy'
admin_site_name = 'pre_flourish_admin'
priority = HIGH_PRIORITY
singleton = True
class PreFlourishCaregiverLocatorAction(SubjectLocatorAction):
name = PRE_FLOURISH_CAREGIVER_LOCATOR_ACTION
display_name = 'Submit Pre Flourish Caregiver Locator'
reference_model = 'pre_flourish.preflourishcaregiverlocator'
admin_site_name = 'pre_flourish_admin'
site_action_items.register(PreFlourishCaregiverLocatorAction)
)
from edc_adverse_event.constants import (
AE_FOLLOWUP_ACTION,
DEATH_REPORT_ACTION,
STUDY_TERMINATION_CONCLUSION_ACTION,
)
class StudyTerminationConclusionAction(ActionWithNotification):
name = STUDY_TERMINATION_CONCLUSION_ACTION
display_name = "Submit Study Termination/Conclusion Report"
notification_display_name = "Study Termination/Conclusion Report"
parent_action_names = [
DEATH_REPORT_ACTION,
AE_FOLLOWUP_ACTION,
]
reference_model = "adverse_event_app.studyterminationconclusion"
show_link_to_changelist = True
admin_site_name = "adverse_event_app_admin"
priority = HIGH_PRIORITY
site_action_items.register(AeFollowupAction)
site_action_items.register(AeInitialAction)
site_action_items.register(AeSusarAction)
site_action_items.register(AeTmgAction)
site_action_items.register(DeathReportAction)
site_action_items.register(DeathReportTmgAction)
site_action_items.register(DeathReportTmgSecondAction)
site_action_items.register(StudyTerminationConclusionAction)
from edc_locator.action_items import SubjectLocatorAction as BaseSubjectLocatorAction
from edc_action_item import site_action_items
SUBJECT_LOCATOR_ACTION = 'submit-trainee-subject-locator'
class TraineeSubjectLocatorAction(BaseSubjectLocatorAction):
name = SUBJECT_LOCATOR_ACTION
display_name = 'Submit Subject Locator'
reference_model = 'trainee_subject.subjectlocator'
admin_site_name = 'trainee_subject_admin'
site_action_items.register(TraineeSubjectLocatorAction)
action_item_cls = django_apps.get_model('edc_action_item.actionitem')
subject_identifier = self.reference_model_obj.subject_identifier
offstudy = action_item_cls.objects.filter(
subject_identifier=subject_identifier,
action_type__name='submit-maternaloff-study')
try:
maternal_deathreport_cls.objects.get(
subject_identifier=subject_identifier)
if not offstudy:
actions = [MaternalOffStudyAction]
except ObjectDoesNotExist:
pass
return actions
class InfantDeathReportAction(Action):
name = INFANT_DEATH_REPORT_ACTION
display_name = 'Submit Infant Death Report'
reference_model = 'td_prn.infantdeathreport'
admin_site_name = 'td_prn_admin'
priority = HIGH_PRIORITY
singleton = True
site_action_items.register(MaternalDeathReportAction)
site_action_items.register(MaternalOffStudyAction)
site_action_items.register(InfantDeathReportAction)
site_action_items.register(InfantOffStudyAction)
from edc_action_item import Action, site_action_items
from edc_constants.constants import HIGH_PRIORITY
from .constants import PRESCRIPTION_ACTION
class PrescriptionAction(Action):
name = PRESCRIPTION_ACTION
display_name = "New prescription"
reference_model = "edc_pharmacy.rx"
priority = HIGH_PRIORITY
show_on_dashboard = True
show_link_to_changelist = True
admin_site_name = "edc_pharmacy_admin"
create_by_user = False
singleton = True
instructions = (
"This prescription will cover the participant for the period on study. "
"All refills are written against this prescription.")
def reopen_action_item_on_change(self):
return False
site_action_items.register(PrescriptionAction)
# early withdrawal if qualifying blood results
# are abnormal on DAY1
evaluator = EarlyWithdrawalEvaluator(
subject_identifier=self.model_obj.subject_identifier)
if not evaluator.eligible:
actions = [StudyTerminationConclusionAction]
elif (self.model_obj.results_abnormal == YES
and self.model_obj.results_reportable == YES):
# AE for reportable result, not on DAY1
actions = [AeInitialAction]
return actions
class ReconsentAction(Action):
name = RECONSENT_ACTION
display_name = 'Re-consent participant'
model = 'ambition_subject.subjectreconsent'
priority = HIGH_PRIORITY
show_on_dashboard = True
show_link_to_changelist = True
admin_site_name = 'ambition_subject_admin'
create_by_user = False
singleton = True
instructions = (
'Participant must be re-consented as soon as able. '
'Participant\'s ICF was initially completed by next-of-kin.')
site_action_items.register(BloodResultAction)
site_action_items.register(ReconsentAction)
def setUp(self):
site_action_items.registry = {}
site_action_items.register(CrfLongitudinalOneAction)
site_action_items.register(CrfLongitudinalTwoAction)
self.subject_identifier = self.enroll()
