def test_update_bad_response(handler, mocker, subject_update_badresponse):
eHBResponse = mocker.MagicMock(
status=200
)
sub_old = Subject(
id=2,
first_name='Jane',
last_name='Sample',
organization_id=1,
organization_subject_id='MRN123',
dob=datetime.datetime(1990, 1, 1),
modified=datetime.datetime(2015, 1, 1),
created=datetime.datetime(2015, 1, 1)
)
sub_new = Subject(
id=2,
first_name='Jane',
last_name='Sample',
organization_id=1,
organization_subject_id='MRN123',
dob=datetime.datetime(1990, 1, 1),
modified=datetime.datetime(2015, 1, 1),
created=datetime.datetime(2015, 1, 1),
)
sub_new.old_subject = sub_old
eHBResponse.read = mocker.MagicMock(return_value=subject_update_badresponse)
handler.request_handler.PUT = mocker.MagicMock(return_value=eHBResponse)
res = handler.update(sub_new)[0]
assert not res['success']
def check_subject(self, subject_1, subject_2):
try:
subject_1_response = self.s_rh.get(id=subject_1)
subject_2_response = self.s_rh.get(id=subject_2)
except:
return {'error': 'Invalid subject Selected'}
sub1 = json.loads(Subject.json_from_identity(subject_1_response))
sub2 = json.loads(Subject.json_from_identity(subject_2_response))
if sub1['id'] is None or sub2['id'] is None:
return {'error': 'Invalid subject Selected'}
return True
def test_identity_to_json():
sub = Subject(
id=2,
first_name='Jane',
last_name='Sample',
organization_id=1,
organization_subject_id='MRN123',
dob=datetime.datetime(1990, 1, 1),
modified=datetime.datetime(2015, 1, 1),
created=datetime.datetime(2015, 1, 1)
)
jsonStr = sub.json_from_identity(sub)
assert isinstance(jsonStr, str)
def test_retrieve_pds_subject_list(self, mock_errh, mock_getsubs):
view = PDSSubjectView.as_view()
url = reverse(
'pds-subject-list',
kwargs={
'pk': 1
})
mock_getsubs.return_value = [Subject(
id=2,
first_name='John',
last_name='Doe',
organization_id=1,
organization_subject_id='1234',
dob=datetime.date(1990, 1, 1),
modified=datetime.datetime(2015, 1, 1),
created=datetime.datetime(2015, 1, 1)
)]
mock_errh.return_value = [{
'success': True,
'external_record': [TestExternalRecord]
}]
request = factory.get(url)
force_authenticate(request, user=self.test_user)
response = view(
request,
pk=self.test_pds.id
)
response.render()
self.assertEqual(response.status_code, 200)
self.assertEqual(len(response.data['subjects']), 1)
self.assertEqual(response.data['count'], 1)
def subjects(self, external_system_id, path=None, organization_id=None):
'''
Attempts to get subject records for subjects that have externalrecords on the specified externalsystem
Inputs:
external_system_id : int value of the externalsystem record id
path (optional) : If specified, this will only return Subjects with externalrecords matching this path
organization_id (optional) : int value of the organization. If specified, this will only return Subjects
belonging to this organization with externalrecords on the externalsystem
Outputs:
list of Subject objects
If no records are found PageNotFound is raised '''
ehb_service_path = self.root_path + 'id/' + str(external_system_id) + '/'
if organization_id is None:
ehb_service_path += 'subjects/'
else:
ehb_service_path += 'organization/' + str(organization_id) + '/subjects/'
if path:
ers = self.external_records(external_system_id, path=path, organization_id=organization_id)
response = self.processGet(ehb_service_path)
status = []
for o in json.loads(response):
s = Subject.identity_from_jsonObject(o)
if path is None:
status.append(s)
else:
for er in ers:
if er.subject_id == s.id and not status.__contains__(s):
status.append(s)
if len(status) == 0:
raise PageNotFound(ehb_service_path)
else:
return status
def test_create_and_delete_subject_on_protocol(self, screate_mock, gadd_mock, gcreate_mock, sget_mock, subject_group_mock):
'''
Ensure that we can create a subject on a Protocol
'''
subject = {
'first_name': 'John',
'last_name': 'Doe',
'organization_subject_id': '1234',
'organization': '1',
'dob': '2000-01-01'
}
url = reverse(
'protocol-subject-create',
kwargs={
'pk': self.test_protocol.id
})
token = Token.objects.get(user__username='******')
client = APIClient()
client.credentials(HTTP_AUTHORIZATION='Token ' + token.key)
# Mock subject not found
sget_mock.side_effect = PageNotFound(path='/')
# Mock subject group creation
gcreate_mock.return_value = [{'success': True}]
# Mock addition of subject to group
gadd_mock.add_subjects.return_value = [{'success': True}]
screate_mock.return_value = [{
'success': True,
'errors': [],
'subject': Subject(
id=2,
first_name='John',
last_name='Doe',
organization_id=1,
organization_subject_id='1234',
dob=datetime.date(1990, 1, 1),
modified=datetime.datetime(2015, 1, 1),
created=datetime.datetime(2015, 1, 1)
)
}]
subject_group_mock.return_value.id = "12345"
response = client.post(url, subject, format='json')
success, subject, errors = response.data
if errors:
print(errors)
self.assertTrue(success)
self.assertEqual(len(errors), 0)
url = reverse(
'protocol-subject-view',
kwargs={
'pk': self.test_protocol.id,
'subject': subject['id']
})
response = client.delete(url)
def put(self, request, pk, subject, *args, **kwargs):
subject_update = json.loads(request.body.decode('utf-8'))
# See if subject exists
try:
ehb_sub = self.s_rh.get(id=subject)
org = self.o_rh.get(id=subject_update['organization'])
protocol = Protocol.objects.get(pk=pk)
old_group_name = SubjectUtils.protocol_subject_record_group_name(
protocol, ehb_sub)
group = self.g_rh.get(name=old_group_name)
except:
return Response({'error': 'subject not found'}, status=404)
ehb_sub.old_subject = deepcopy(ehb_sub)
ehb_sub.first_name = subject_update['first_name']
ehb_sub.last_name = subject_update['last_name']
ehb_sub.organization_subject_id = subject_update[
'organization_subject_id']
ehb_sub.organization_id = org.id
ehb_sub.dob = datetime.strptime(subject_update['dob'], '%Y-%m-%d')
new_group_name = SubjectUtils.protocol_subject_record_group_name(
protocol, ehb_sub)
group.name = new_group_name
group.client_key = protocol._settings_prop('CLIENT_KEY', 'key', '')
group.current_client_key(group.client_key)
update = self.s_rh.update(ehb_sub)[0]
if update['errors']:
return Response(json.dumps({'error': 'Unable to update subject'}),
status=400)
# If the update is succesful, update the subject record group associated with this subject
res = self.g_rh.update(group)[0]
if not res['success']:
return Response(json.dumps({'error': 'Unable to update group'}),
status=400)
# If the update is succesful, update the cache.
sub = json.loads(Subject.json_from_identity(update['subject']))
sub['organization_name'] = org.name
cache_key = 'protocol{0}_sub_data'.format(pk)
cache_data = self.cache.get(cache_key)
if cache_data:
if 'external_ids' in list(subject_update.keys()):
sub['external_ids'] = subject_update['external_ids']
else:
sub['external_ids'] = []
sub['external_records'] = subject_update['external_records']
sub['organization_name'] = org.name
subjects = json.loads(cache_data)
for i in range(0, len(subjects)):
if subjects[i]['id'] == sub['id']:
subjects[i] = sub
self.cache.set(cache_key, json.dumps(subjects))
if hasattr(self.cache, 'persist'):
self.cache.persist(cache_key)
return Response(sub, headers={'Access-Control-Allow-Origin': '*'})
def put(self, request, pk, subject, *args, **kwargs):
subject_update = json.loads(request.body.decode('utf-8'))
# See if subject exists
try:
ehb_sub = self.s_rh.get(id=subject)
org = self.o_rh.get(id=subject_update['organization'])
protocol = Protocol.objects.get(pk=pk)
old_group_name = SubjectUtils.protocol_subject_record_group_name(protocol, ehb_sub)
group = self.g_rh.get(name=old_group_name)
except:
return Response({'error': 'subject not found'}, status=404)
ehb_sub.old_subject = deepcopy(ehb_sub)
ehb_sub.first_name = subject_update['first_name']
ehb_sub.last_name = subject_update['last_name']
ehb_sub.organization_subject_id = subject_update['organization_subject_id']
ehb_sub.organization_id = org.id
ehb_sub.dob = datetime.strptime(subject_update['dob'], '%Y-%m-%d')
new_group_name = SubjectUtils.protocol_subject_record_group_name(protocol, ehb_sub)
group.name = new_group_name
group.client_key = protocol._settings_prop(
'CLIENT_KEY', 'key', '')
group.current_client_key(group.client_key)
update = self.s_rh.update(ehb_sub)[0]
if update['errors']:
return Response(json.dumps({'error': 'Unable to update subject'}), status=400)
# If the update is succesful, update the subject record group associated with this subject
res = self.g_rh.update(group)[0]
if not res['success']:
return Response(json.dumps({'error': 'Unable to update group'}), status=400)
# If the update is succesful, update the cache.
sub = json.loads(Subject.json_from_identity(update['subject']))
sub['organization_name'] = org.name
cache_key = 'protocol{0}_sub_data'.format(pk)
cache_data = self.cache.get(cache_key)
if cache_data:
if 'external_ids' in list(subject_update.keys()):
sub['external_ids'] = subject_update['external_ids']
else:
sub['external_ids'] = []
sub['external_records'] = subject_update['external_records']
sub['organization_name'] = org.name
subjects = json.loads(cache_data)
for i in range(0, len(subjects)):
if subjects[i]['id'] == sub['id']:
subjects[i] = sub
self.cache.set(cache_key, json.dumps(subjects))
if hasattr(self.cache, 'persist'):
self.cache.persist(cache_key)
return Response(
sub,
headers={'Access-Control-Allow-Origin': '*'}
)
def getProtocolSubjects(protocol):
ck = '{0}_subjects'.format(protocol.id)
resp = cache.get(ck)
if resp:
subs = [
Subject(-1).identity_from_jsonObject(sub)
for sub in json.loads(resp)
]
return subs
else:
subs = protocol.getSubjects()
if subs:
cache_payload = [
json.loads(subject.json_from_identity(subject))
for subject in subs
]
cache.set(ck, json.dumps(cache_payload))
return subs
def get(self, request, pk, subject, *args, **kwargs):
''' get all subject data:
external records, Organization, external ids and relationships'''
# TODO: add getting relationships for subjects here
try:
p = Protocol.objects.get(pk=pk)
except ObjectDoesNotExist:
return Response({'error': 'Protocol requested not found'},
status=404)
if p.isUserAuthorized(request.user):
protocoldatasources = p.getProtocolDataSources()
manageExternalIDs = False
for pds in protocoldatasources:
if pds.driver == 3:
ExIdSource = pds
manageExternalIDs = True
try:
subject = self.s_rh.get(id=subject)
organization = self.o_rh.get(id=subject.organization_id)
except:
return Response({'error': 'Subject not found'}, status=404)
sub = json.loads(Subject.json_from_identity(subject))
sub['organization_name'] = organization.name
sub['external_records'] = []
for pds in protocoldatasources:
sub['external_records'].extend(
pds.getSubjectExternalRecords(sub))
if manageExternalIDs:
# Break out external ids into a separate object for ease of use
sub['external_ids'] = []
for record in sub['external_records']:
if record['external_system'] == 3:
sub['external_ids'].append(record)
return Response(sub)
else:
return Response(
{
"detail":
"You are not authorized to view subjects in this protocol"
},
status=403)
def getSubject(self, subjectId):
cache_key = '{}_subjects'.format(self.protocol.id)
cached = cache.get(cache_key)
if cached:
subs = json.loads(cached)
for subject in subs:
if subject['id'] == int(subjectId):
return Subject(-1).identity_from_jsonObject(subject)
else:
try:
s_rh = ServiceClient.get_rh_for(record_type=ServiceClient.SUBJECT)
subject = s_rh.get(id=subjectId)
if not self.protocol.isSubjectOnProtocol(subject):
raise Http404
else:
return subject
except PageNotFound:
raise Http404
return None
def getPDSSubject(pds, sub_id):
ck = '{0}_subjects'.format(pds.protocol.id)
resp = cache.get(ck)
if resp:
subs = json.loads(resp)
for subject in subs:
if subject['id'] == int(sub_id):
return Subject(-1).identity_from_jsonObject(subject)
else:
try:
s_rh = ServiceClient.get_rh_for(record_type=ServiceClient.SUBJECT)
subject = s_rh.get(id=sub_id)
if not pds.protocol.isSubjectOnProtocol(subject):
raise Http404
else:
return subject
except PageNotFound:
raise Http404
return None
def getSubject(self, subjectId):
"""Get a subject from the EHB by subject id.
Raises Http404 if the subject is not found or is not part of the
related protocol.
"""
cache_key = '{}_subjects'.format(self.protocol.id)
cached = cache.get(cache_key)
if cached:
subs = json.loads(cached)
for subject in subs:
if subject['id'] == int(subjectId):
return Subject(-1).identity_from_jsonObject(subject)
else:
try:
s_rh = ServiceClient.get_rh_for(
record_type=ServiceClient.SUBJECT)
subject = s_rh.get(id=subjectId)
# If the subject is not in this protocol, raise an error.
if not self.protocol.isSubjectOnProtocol(subject):
raise Http404
else:
return subject
except PageNotFound:
raise Http404
# TODO: Is this statement ever reached? If not, refactor for clarity.
return None
def get(self, request, pk, subject, *args, **kwargs):
''' get subject '''
try:
p = Protocol.objects.get(pk=pk)
except ObjectDoesNotExist:
return Response({'error': 'Protocol requested not found'}, status=404)
if p.isUserAuthorized(request.user):
protocoldatasources = p.getProtocolDataSources()
manageExternalIDs = False
for pds in protocoldatasources:
if pds.driver == 3:
ExIdSource = pds
manageExternalIDs = True
try:
subject = self.s_rh.get(id=subject)
organization = self.o_rh.get(id=subject.organization_id)
except:
return Response({'error': 'Subject not found'}, status=404)
sub = json.loads(Subject.json_from_identity(subject))
sub['organization_name'] = organization.name
sub['external_records'] = []
for pds in protocoldatasources:
sub['external_records'].extend(pds.getSubjectExternalRecords(sub))
if manageExternalIDs:
# Break out external ids into a separate object for ease of use
sub['external_ids'] = []
for record in sub['external_records']:
if record['external_system'] == 3:
sub['external_ids'].append(record)
return Response(sub)
else:
return Response(
{"detail": "You are not authorized to view subjects in this protocol"},
status=403
)
def post(self, request, pk, *args, **kwargs):
'''
Add a subject to the protocol
Expects a request body of the form:
{
"first_name": "John",
"last_name": "Doe",
"organization_subject_id": "123123123",
"organization": "1",
"dob": "2000-01-01"
}
'''
try:
protocol = Protocol.objects.get(pk=pk)
except ObjectDoesNotExist:
return Response({'error': 'Protocol requested not found'}, status=404)
subject = json.loads(request.body.decode('utf-8'))
new_subject = Subject(
first_name=subject['first_name'],
last_name=subject['last_name'],
organization_id=int(subject['organization']),
organization_subject_id=subject['organization_subject_id'],
dob=datetime.strptime(subject['dob'], '%Y-%m-%d')
)
try:
org = self.o_rh.get(id=subject['organization'])
except:
return Response({'error': 'Invalid Organization Selected'}, status=400)
errors = []
try:
subject = self.s_rh.get(
organization_id=new_subject.organization_id,
organization_subject_id=new_subject.organization_subject_id)
success = True
# If found this indicates the subject is already in the ehb for
# this organization, but not necessarily for this protocol.
# That will be checked below in the external record search
prefix = "A subject with this " + org.subject_id_label + " exists but with "
if subject.first_name != new_subject.first_name:
success = False
errors.append(prefix + "first name: " + subject.first_name)
if subject.last_name != new_subject.last_name:
success = False
errors.append(prefix + "last name: " + subject.last_name)
if subject.dob != new_subject.dob.date():
success = False
errors.append(prefix + "birth date: " + str(subject.dob))
except PageNotFound:
# Subject is not in the system so create it
r = self.s_rh.create(new_subject)[0]
success = r.get('success')
errors = r.get('errors')
subject = r.get(Subject.identityLabel)
# Dont proceed if creation was not a success
if not success:
subject = json.loads(Subject.json_from_identity(subject))
return Response([success, subject, errors], status=422)
if not errors:
errors = []
# First check if the subject is already in the group.
if protocol.getSubjects() and subject in protocol.getSubjects():
# Subject is already in protocol
errors.append(
'This subject ' + org.subject_id_label +
' has already been added to this project.'
)
logger.error("Could not add subject. They already exist on this protocol.")
success = False
else:
# Add this subject to the protocol and create external record group
if self.subject_utils.create_protocol_subject_record_group(protocol, new_subject):
if protocol.addSubject(subject):
success = True
else:
# Could not add subject to project
errors.append(
'Failed to complete eHB transactions. Could not add subject to project. Please try again.')
success = False
else:
# For some reason we couldn't get the eHB to add the subject to the protocol group
errors.append(
'Failed to complete eHB transactions. Could not add subject to project. Please try again.')
success = False
subject = json.loads(Subject.json_from_identity(subject))
if not success:
return Response(
[success, subject, errors],
headers={'Access-Control-Allow-Origin': '*'},
status=400
)
# Add subject to cache
cache_key = 'protocol{0}_sub_data'.format(protocol.id)
cache_data = self.cache.get(cache_key)
if cache_data:
subject['external_ids'] = []
subject['external_records'] = []
subject['organization_name'] = org.name
subjects = json.loads(cache_data)
subjects.append(subject)
self.cache.set(cache_key, json.dumps(subjects))
if hasattr(self.cache, 'persist'):
self.cache.persist(cache_key)
return Response(
[success, subject, errors],
headers={'Access-Control-Allow-Origin': '*'},
status=200
)
def post(self, request, pk, *args, **kwargs):
'''
Add a subject to the protocol
Expects a request body of the form:
{
"first_name": "John",
"last_name": "Doe",
"organization_subject_id": "123123123",
"organization": "1",
"dob": "2000-01-01"
}
'''
try:
protocol = Protocol.objects.get(pk=pk)
except ObjectDoesNotExist:
return Response({'error': 'Protocol requested not found'},
status=404)
subject = json.loads(request.body.decode('utf-8'))
new_subject = Subject(
first_name=subject['first_name'],
last_name=subject['last_name'],
organization_id=int(subject['organization']),
organization_subject_id=subject['organization_subject_id'],
dob=datetime.strptime(subject['dob'], '%Y-%m-%d'))
try:
org = self.o_rh.get(id=subject['organization'])
except:
return Response({'error': 'Invalid Organization Selected'},
status=400)
errors = []
try:
subject = self.s_rh.get(
organization_id=new_subject.organization_id,
organization_subject_id=new_subject.organization_subject_id)
success = True
# If found this indicates the subject is already in the ehb for
# this organization, but not necessarily for this protocol.
# That will be checked below in the external record search
prefix = "A subject with this " + org.subject_id_label + " exists but with "
if subject.first_name != new_subject.first_name:
success = False
errors.append(prefix + "first name: " + subject.first_name)
if subject.last_name != new_subject.last_name:
success = False
errors.append(prefix + "last name: " + subject.last_name)
if subject.dob != new_subject.dob.date():
success = False
errors.append(prefix + "birth date: " + str(subject.dob))
except PageNotFound:
# Subject is not in the system so create it
r = self.s_rh.create(new_subject)[0]
success = r.get('success')
errors = r.get('errors')
subject = r.get(Subject.identityLabel)
# Dont proceed if creation was not a success
if not success:
subject = json.loads(Subject.json_from_identity(subject))
return Response([success, subject, errors], status=422)
if not errors:
errors = []
# First check if the subject is already in the group.
if protocol.getSubjects() and subject in protocol.getSubjects():
# Subject is already in protocol
errors.append('This subject ' + org.subject_id_label +
' has already been added to this project.')
logger.error(
"Could not add subject. They already exist on this protocol.")
success = False
else:
# Add this subject to the protocol and create external record group
if self.subject_utils.create_protocol_subject_record_group(
protocol, new_subject):
if protocol.addSubject(subject):
success = True
else:
# Could not add subject to project
errors.append(
'Failed to complete eHB transactions. Could not add subject to project. Please try again.'
)
success = False
else:
# For some reason we couldn't get the eHB to add the subject to the protocol group
errors.append(
'Failed to complete eHB transactions. Could not add subject to project. Please try again.'
)
success = False
subject = json.loads(Subject.json_from_identity(subject))
if not success:
return Response([success, subject, errors],
headers={'Access-Control-Allow-Origin': '*'},
status=400)
# Add subject to cache
cache_key = 'protocol{0}_sub_data'.format(protocol.id)
cache_data = self.cache.get(cache_key)
if cache_data:
subject['external_ids'] = []
subject['external_records'] = []
subject['organization_name'] = org.name
subjects = json.loads(cache_data)
subjects.append(subject)
self.cache.set(cache_key, json.dumps(subjects))
if hasattr(self.cache, 'persist'):
self.cache.persist(cache_key)
return Response([success, subject, errors],
headers={'Access-Control-Allow-Origin': '*'},
status=200)
def save(self, protocol):
'''
Attempts to save the data provided in the form as a new subject in
ehb-service database.
Output
------
If the form is valid:
{
subject: Subject_instance,
"success": boolean,
"errors": errors
}
(Where errors is only present if there were errors in creating the
object in the server db)
else:
None
'''
if self.is_valid():
cleandata = self.cleaned_data
sub_id = cleandata.get('subject_id')
fn = cleandata.get('first_name')
ln = cleandata.get('last_name')
dob = cleandata.get('dob')
org = self.getOrgFromSelection(cleandata.get('organization'))
# Create the subject record for this organization
# First check if the subject is in the system at all, if not create it
srh = ServiceClient.get_rh_for(record_type=ServiceClient.SUBJECT)
errors = []
try:
subject = srh.get(organization_id=org.id, organization_subject_id=sub_id)
# If found this indicates the subject is already in the ehb for
# this organization, but not necessarily for this protocol.
# That will be checked below in the external record search
# check if all new_subject form fields match this existing
# subject if not, the form data must be corrected
# should add an option to update the record (permission to do so might be role based)
success = True
prefix = "A subject with this " + org.subject_id_label + " exists but with "
if subject.first_name != fn:
success = False
errors.append(prefix + "first name: " + subject.first_name)
if subject.last_name != ln:
success = False
errors.append(prefix + "last name: " + subject.last_name)
if subject.dob != dob:
success = False
errors.append(prefix + "birth date: " + str(subject.dob))
except PageNotFound:
# Subject not in system so create it
s = Subject(first_name=fn,
last_name=ln,
dob=dob,
organization_id=org.id,
organization_subject_id=sub_id)
r = srh.create(s)[0]
success = r.get('success')
errors = r.get('errors')
subject = r.get(Subject.identityLabel)
# Don't proceed any further if there are already errors
if not success:
logger.error('There was an error creating the subject.')
return [success, subject, errors]
if not errors:
errors = []
# First check if the subject is already in the group
if protocol.getSubjects() and subject in protocol.getSubjects():
# Subject is already on this protocol
errors.append(
'This subject ' + org.subject_id_label +
' has already been added to this project.'
)
logger.error("Could not add subject. They already exist on this protocol.")
success = False
else:
# Add this subject to the protocol and create external record group
# Create subject/protocol external record group
if SubjectUtils.create_protocol_subject_record_group(protocol, subject):
# Add subject to protocol subject group
if protocol.addSubject(subject):
success = True
else:
logger.error("Could not add subject. Failure to create Protocol Subject Record Group.")
errors.append(
'Failed to complete eHB transactions. Could not add subject to project. Please try again.')
success = False
else:
# For some reason we couldn't get the eHB to add the subject to the protocol group
logger.error("Could not add subject to project. Could not add subject to the protocol group.")
errors.append(
'Failed to complete eHB transactions. Could not add subject to project. Please try again.')
success = False
return [success, subject, errors]
else:
return None
def post(self, request, pk, *args, **kwargs):
'''
Add a subject to the protocol
Expects a request body of the form:
{
"last_name": "John",
"last_name": "Doe",
"organization_subject_id": "123123123",
"organization": "1",
"dob": "2000-01-01"
}
'''
try:
protocol = Protocol.objects.get(pk=pk)
except ObjectDoesNotExist:
return Response({'error': 'Protocol requested not found'},
status=404)
subject = request.data
new_subject = Subject(
first_name=subject['first_name'],
last_name=subject['last_name'],
organization_id=int(subject['organization']),
organization_subject_id=subject['organization_subject_id'],
dob=datetime.strptime(subject['dob'], '%Y-%m-%d'))
try:
org = self.o_rh.get(id=subject['organization'])
except:
return Response({'error': 'Invalid Organization Selected'},
status=400)
errors = []
try:
subject = self.s_rh.get(
organization_id=new_subject.organization_id,
organization_subject_id=new_subject.organization_subject_id)
success = True
# If found this indicates the subject is already in the ehb for
# this organization, but not necessarily for this protocol.
# That will be checked below in the external record search
prefix = "A subject with this " + org.subject_id_label + " exists but with "
if subject.first_name != new_subject.first_name:
success = False
errors.append(prefix + "first name: " + subject.first_name)
if subject.last_name != new_subject.last_name:
success = False
errors.append(prefix + "last name: " + subject.last_name)
if subject.dob != new_subject.dob.date():
success = False
errors.append(prefix + "birth date: " + str(subject.dob))
except PageNotFound:
# Subject is not in the system so create it
r = self.s_rh.create(new_subject)[0]
success = r.get('success')
errors = r.get('errors')
subject = r.get(Subject.identityLabel)
# Dont proceed if creation was not a success
if not success:
subject = json.loads(Subject.json_from_identity(subject))
return Response([success, subject, errors], status=422)
if not errors:
errors = []
# Add this subject to the protocol and create external record group
if self.subject_utils.create_protocol_subject_record_group(
protocol, new_subject):
if protocol.addSubject(subject):
success = True
# add this action to the user audit
user_audit_payload = [{
'subject':
subject.id,
'change_type':
"SubjectGroup",
'change_type_ehb_pk':
protocol._subject_group().id,
'change_action':
"Add",
'user_name':
request.user.username,
'protocol_id':
protocol.id
}]
ServiceClient.user_audit(user_audit_payload)
else:
# Could not add subject to project
errors.append(
'Failed to complete eHB transactions. Could not add subject to project. Please try again.'
)
success = False
else:
# For some reason we couldn't get the eHB to add the subject to the protocol group
subjects = protocol.getSubjects()
if subjects and subject in subjects:
# Subject is already in protocol
errors.append('This subject ' + org.subject_id_label +
' has already been added to this project.')
logger.error(
"Could not add subject. They already exist on this protocol."
)
success = False
else:
errors.append(
'Failed to complete eHB transactions. Could not add subject to project. Please try again.'
)
success = False
subject = json.loads(Subject.json_from_identity(subject))
subject['organization_name'] = org.name
if not success:
return Response([success, subject, errors],
headers={'Access-Control-Allow-Origin': '*'},
status=400)
# Add subject to cache
self.update_subject_cache(protocol.id, subject, True)
return Response([success, subject, errors],
headers={'Access-Control-Allow-Origin': '*'},
status=200)
from ehb_client.requests.external_record_request_handler import ExternalRecord
from ehb_client.requests.group_request_handler import Group
from ehb_client.requests.exceptions import PageNotFound
from ..models.protocols import Protocol, ProtocolDataSource
from ..views.protocol import ProtocolViewSet, ProtocolDataSourceView, \
ProtocolOrganizationView, ProtocolSubjectsView, ProtocolSubjectDetailView
from ..views import PDSViewSet, PDSSubjectView, PDSSubjectRecordsView, \
PDSSubjectRecordDetailView, PDSRecordLinkDetailView, PDSAvailableLinksView
from api.views.base import BRPApiView
factory = APIRequestFactory()
TestSubject = Subject(id=2,
first_name='Jane',
last_name='Sample',
organization_id=1,
organization_subject_id='MRN123',
dob=datetime.date(1990, 1, 1),
modified=datetime.datetime(2015, 1, 1),
created=datetime.datetime(2015, 1, 1))
TestOrganization = Organization(id=1,
name='Amazing Children\'s Hospital',
subject_id_label='Subject',
modified=datetime.datetime(2015, 1, 1),
created=datetime.datetime(2015, 1, 1))
TestExternalRecord = ExternalRecord(record_id='xyz123',
external_system_id=1,
subject_id=1,
path='testpath',
modified=datetime.datetime(2014, 1, 1),
created=datetime.datetime(2014, 1, 1),
id=1,