def on_form_ok(self,params):
if not params.has_key("filenames"):
EMErrorMessageDisplay.run(["Please select files for processing"])
return
if params.has_key("filenames") and len(params["filenames"]) == 0:
EMErrorMessageDisplay.run(["Please select files for processing"])
return
self.write_db_entries(params)
e2tblist = "e2spt_boxer.py"
e2tblist += " "+params['filenames'][0]
if params["yshort"]:
e2tblist += " --yshort"
if params["inmemory"]:
e2tblist += " --inmemory"
e2tblist += " --apix="+str(params["apix"])
child = subprocess.Popen(e2tblist, shell=True)
self.form.close()
self.form = None
self.write_db_entries(params)
def on_form_ok(self, params):
if not params.has_key("filenames"):
EMErrorMessageDisplay.run(["Please select files for processing"])
return
if params.has_key("filenames") and len(params["filenames"]) == 0:
EMErrorMessageDisplay.run(["Please select files for processing"])
return
self.write_db_entries(params)
e2tblist = "e2spt_boxer.py"
e2tblist += " " + params['filenames'][0]
if params["yshort"]:
e2tblist += " --yshort"
if params["inmemory"]:
e2tblist += " --inmemory"
e2tblist += " --apix=" + str(params["apix"])
child = subprocess.Popen(e2tblist, shell=True)
self.form.close()
self.form = None
self.write_db_entries(params)
def on_form_ok(self,params):
if not params.has_key("filenames"):
EMErrorMessageDisplay.run(["Please select files for processing"])
return
if params.has_key("filenames") and len(params["filenames"]) == 0:
EMErrorMessageDisplay.run(["Please select files for processing"])
return
if len(params["refnames"]) > 1:
EMErrorMessageDisplay.run(["Only one referecne can be used"])
return
e23dcalist = "e2spt_classaverage.py"
e23dcalist += " --input="+params['filenames'][0]
if(params['filenames'][0][-4:-3] == "."):
e23dcalist += " --output="+params['filenames'][0][:-4]+"_3DAVG."+params['filenames'][0][-3:] # output file hack
else:
e23dcalist += " --output="+params['filenames'][0]+"_3DAVG"
spacer = ""
try:
e23dcalist += " --ref="+params["refnames"][0]
except:
pass
if params["savesteps"]:
e23dcalist += " --savesteps"
if params["saveali"]:
e23dcalist += " --saveali"
if params["number of iterations"]:
e23dcalist += " --iter="+str(params["number of iterations"])
if params["Percentage to shrink"]:
e23dcalist += " --shrink="+str(params["Percentage to shrink"])
if params["Percentage to shrink, refinement"]:
e23dcalist += " --shrinkrefine="+str(params["Percentage to shrink, refinement"])
if params["coarse number"]:
e23dcalist += " --npeakstorefine="+str(params["coarse number"])
if params["mask"] != "None":
spacer=""
if params["maskparams"]: spacer=":"
e23dcalist += " --mask="+params["mask"]+spacer+params["maskparams"]
if params["filter"] != "None":
spacer=""
if params["filterparams"]: spacer=":"
e23dcalist += " --preprocess="+params["filter"]+spacer+params["filterparams"]
spacer=""
if params["ali3dparams"]: spacer=":"
e23dcalist += " --align="+params["aligner3D"]+spacer+params["ali3dparams"]
spacer=""
if params["rali3dparams"]: spacer=":"
e23dcalist += " --ralign="+params["raligner3D"]+spacer+params["rali3dparams"]
if params["postfilter"] != "None":
if params["postfilterparams"]: spacer=":"
e23dcalist += " --postprocess="+params["postfilter"]+spacer+params["postfilterparams"]
if params["parallel"]:
e23dcalist += " --parallel="+params["parallel"]
print e23dcalist
child = subprocess.Popen(e23dcalist, shell=True)
self.form.close()
self.form = None
self.write_db_entries(params)
def on_form_ok(self, params):
if not params.has_key("filenames"):
EMErrorMessageDisplay.run(["Please select files for processing"])
return
if params.has_key("filenames") and len(params["filenames"]) == 0:
EMErrorMessageDisplay.run(["Please select files for processing"])
return
if len(params["refnames"]) > 1:
EMErrorMessageDisplay.run(["Only one referecne can be used"])
return
e23dcalist = "e2spt_classaverage.py"
e23dcalist += " --input=" + params['filenames'][0]
if (params['filenames'][0][-4:-3] == "."):
e23dcalist += " --output=" + params['filenames'][
0][:-4] + "_3DAVG." + params['filenames'][0][
-3:] # output file hack
else:
e23dcalist += " --output=" + params['filenames'][0] + "_3DAVG"
spacer = ""
try:
e23dcalist += " --ref=" + params["refnames"][0]
except:
pass
if params["savesteps"]:
e23dcalist += " --savesteps"
if params["saveali"]:
e23dcalist += " --saveali"
if params["number of iterations"]:
e23dcalist += " --iter=" + str(params["number of iterations"])
if params["Percentage to shrink"]:
e23dcalist += " --shrink=" + str(params["Percentage to shrink"])
if params["Percentage to shrink, refinement"]:
e23dcalist += " --shrinkrefine=" + str(
params["Percentage to shrink, refinement"])
if params["coarse number"]:
e23dcalist += " --npeakstorefine=" + str(params["coarse number"])
if params["mask"] != "None":
spacer = ""
if params["maskparams"]: spacer = ":"
e23dcalist += " --mask=" + params["mask"] + spacer + params[
"maskparams"]
if params["filter"] != "None":
spacer = ""
if params["filterparams"]: spacer = ":"
e23dcalist += " --preprocess=" + params[
"filter"] + spacer + params["filterparams"]
spacer = ""
if params["ali3dparams"]: spacer = ":"
e23dcalist += " --align=" + params["aligner3D"] + spacer + params[
"ali3dparams"]
spacer = ""
if params["rali3dparams"]: spacer = ":"
e23dcalist += " --ralign=" + params["raligner3D"] + spacer + params[
"rali3dparams"]
if params["postfilter"] != "None":
if params["postfilterparams"]: spacer = ":"
e23dcalist += " --postprocess=" + params[
"postfilter"] + spacer + params["postfilterparams"]
if params["parallel"]:
e23dcalist += " --parallel=" + params["parallel"]
print e23dcalist
child = subprocess.Popen(e23dcalist, shell=True)
self.form.close()
self.form = None
self.write_db_entries(params)
