def on_params_is_valid(self, exp, *args, **kwargs):
# Convert to BinaryInteraction
interaction_df = self.upload_interaction.get_as_data_frame()
interaction = BinaryInteraction(exp.get_data_folder(), str(self.uuid))
interaction.store_matrix(interaction_df)
interaction.row_units = self.row_units
interaction.col_units = self.col_units
self.set_out_var("interaction", interaction)
exp.store_block(self)
def upload_interaction_task(exp, block):
AllUpdated(exp.pk, comment=u"Processing Upload Interaction block", silent=False, mode=NotifyMode.INFO).send()
if settings.CELERY_DEBUG:
import sys
sys.path.append("/Migration/skola/phd/projects/miXGENE/mixgene_project/wrappers/pycharm-debug.egg")
import pydevd
pydevd.settrace("localhost", port=6901, stdoutToServer=True, stderrToServer=True)
# Convert to BinaryInteraction
sep = getattr(block, "csv_sep", " ")
if block.header:
_header = 0
else:
_header = None
interaction_df = block.upload_interaction.get_as_data_frame(sep=sep, header=_header)
sd = None
# if self.bi_data_type in ["pairs", "triples", "pairs_diff", "triples_diff"]:
# we have to find a shape of interaction matrix
features_1 = interaction_df[interaction_df.columns[0]].tolist()
features_2 = interaction_df[interaction_df.columns[1]].tolist()
interactions = []
if block.bi_data_type in ["triples", "triples_diff"]:
interactions = zip(features_1, features_2, interaction_df[interaction_df.columns[2]].tolist())
else:
interactions = zip(features_1, features_2, [1] * len(features_1))
# new_inters = [expand_inters(inters_a, inters_b, value) for (inters_a, inters_b, value) in interactions]
# new_inters = [item for sublist in new_inters for item in sublist] # flatten
features_1 = [a for [a, _, _] in interactions]
features_2 = [b for [_, b, _] in interactions]
values = [c for [_, _, c] in interactions]
interaction_df = pd.DataFrame()
interaction_df[0] = features_1
interaction_df[1] = features_2
interaction_df[2] = values
interaction = BinaryInteraction(exp.get_data_folder(), str(block.uuid))
interaction.store_pairs(interaction_df, block.bi_data_type)
# interaction.row_units = self.row_units
# interaction.col_units = self.col_units
interaction.header = block.header
AllUpdated(
exp.pk, comment=u"Processing of Upload Interaction block is done", silent=False, mode=NotifyMode.INFO
).send()
return [interaction], {}
def upload_interaction_task(exp, block):
AllUpdated(exp.pk,
comment=u"Processing Upload Interaction block",
silent=False,
mode=NotifyMode.INFO).send()
if settings.CELERY_DEBUG:
import sys
sys.path.append(
'/Migration/skola/phd/projects/miXGENE/mixgene_project/wrappers/pycharm-debug.egg'
)
import pydevd
pydevd.settrace('localhost',
port=6901,
stdoutToServer=True,
stderrToServer=True)
# Convert to BinaryInteraction
sep = getattr(block, "csv_sep", " ")
if block.header:
_header = 0
else:
_header = None
interaction_df = block.upload_interaction.get_as_data_frame(sep=sep,
header=_header)
sd = None
# if self.bi_data_type in ["pairs", "triples", "pairs_diff", "triples_diff"]:
# we have to find a shape of interaction matrix
features_1 = interaction_df[interaction_df.columns[0]].tolist()
features_2 = interaction_df[interaction_df.columns[1]].tolist()
interactions = []
if block.bi_data_type in ["triples", "triples_diff"]:
interactions = zip(features_1, features_2,
interaction_df[interaction_df.columns[2]].tolist())
else:
interactions = zip(features_1, features_2, [1] * len(features_1))
# new_inters = [expand_inters(inters_a, inters_b, value) for (inters_a, inters_b, value) in interactions]
# new_inters = [item for sublist in new_inters for item in sublist] # flatten
features_1 = [a for [a, _, _] in interactions]
features_2 = [b for [_, b, _] in interactions]
values = [c for [_, _, c] in interactions]
interaction_df = pd.DataFrame()
interaction_df[0] = features_1
interaction_df[1] = features_2
interaction_df[2] = values
interaction = BinaryInteraction(exp.get_data_folder(), str(block.uuid))
interaction.store_pairs(interaction_df, block.bi_data_type)
interaction.x1_unit = getattr(block, "x1_unit", "")
interaction.x2_unit = getattr(block, "x2_unit", "")
interaction.header = block.header
AllUpdated(exp.pk,
comment=u"Processing of Upload Interaction block is done",
silent=False,
mode=NotifyMode.INFO).send()
return [interaction], {}
def on_params_is_valid(self, exp, *args, **kwargs):
# Convert to BinaryInteraction
interaction_df = self.upload_interaction.get_as_data_frame()
interaction = BinaryInteraction(exp.get_data_folder(), str(self.uuid))
interaction.store_matrix(interaction_df)
interaction.row_units = self.row_units
interaction.col_units = self.col_units
self.set_out_var("interaction", interaction)
exp.store_block(self)
