def setupBlComm():
# global message_string_pv
thread.start_new_thread(process_commands,(.05,))
# message_string_pv = PV(beamlineName + "_comm:message_string")
comm_pv = PV(beamlineName + "_comm:command_s")
comm_pv.put("\n",wait=True)
comm_pv.add_callback(comm_cb)
def __init__(self, pvStatusName="", pvControlName="", pvHutchName="", mnemonic="", invert=False):
StandardDevice.__init__(self, mnemonic)
self.delay = 0.01
self.invert = invert
self.pvStatus = PV(pvStatusName)
self.pvControl = PV(pvControlName)
self.pvHutch = PV(pvHutchName)
def __init__(self, verbose=False, pidfile=None,
heartbeat_pvname=None,
pulsecount_pvname=None, **kws):
self.verbose = verbose
self.scandb = ScanDB()
try:
self.set_state(0)
except:
raise RuntimeError("Cannot connect to ScanDB")
self.state = 0
self.last = self.pulse = -1
self.last_move_time = 0
self.config = None
self.dead_time = 0.5
self.id_lookahead = 2
self.with_id = False
self.counters = []
self.pidfile = pidfile or DEFAULT_PIDFILE
self.pulsecount_pv = None
self.heartbeat_pv = None
if pulsecount_pvname is not None:
self.pulsecount_pv = PV(pulsecount_pvname)
if heartbeat_pvname is not None:
self.heartbeat_pv = PV(heartbeat_pvname)
self.connected = False
self.connect()
def __init__(self, pvName, mnemonic):
"""
**Constructor**
See :class:`py4syn.epics.StandardDevice`
Parameters
----------
pvName : `string`
Power supply base naming of the PV (Process Variable)
mnemonic : `string`
Power supply mnemonic
"""
super().__init__(mnemonic)
self.pvName = pvName
self.voltage = Device(pvName + ':VOLTAGE:', self.RANGE)
self.current = Device(pvName + ':CURRENT:', self.RANGE)
self.program = Device(pvName + ':PROGRAM:', self.PROGRAM)
self.programVoltage = Device(pvName + ':PROGRAM:VOLTAGE:', self.PROGRAM_SUB)
self.programCurrent = Device(pvName + ':PROGRAM:CURRENT:', self.PROGRAM_SUB)
self.resetPV = PV(pvName + ':RESET')
self.mode = Device(pvName + ':MODE:', ['SET', 'GET', 'GET.PROC'])
self.operationFlag = Device(pvName + ':',
['GET:OPERATION:FLAG', 'GET:OPERATION:FLAG.PROC'])
self.timePV = PV(pvName + ':PROGRAM:TIME:ADD')
self.error = Device(pvName + ':', ['ERROR', 'ERROR.PROC', 'ERROR:TEXT'])
self.defaults()
# Operation mode (voltage x current) is cached, so get it immediatelly
self.procAndGet(self.mode, 'GET')
def move(self, val, wait=True, delta=0.005, timeout=360.0):
"""Put value and press Go button."""
PV.put(self, val)
sleep(0.2)
self.go.put(1)
if wait:
Motor.motorWait(self, val, delta, timeout)
def start_processes(counter_pv, data_pv, logger, *args):
"""
This is a main thread that starts thread reacting to the callback, starts the consuming process, and sets a
callback on the frame counter PV change. The function then awaits for the data in the exit queue that indicates
that all frames have been processed. The functin cancells the callback on exit.
Parameters
----------
counter_pv : str
a PV string for the area detector frame counter
data_pv : str
a PV string for the area detector frame data
logger : Logger
a Logger instance, typically synchronized with the consuming process logger
*args : list
a list of arguments specific to the client process
Returns
-------
None
"""
data_thread = CAThread(target = deliver_data, args=(data_pv, logger,))
data_thread.start()
start_process(globals.process_dataq, logger, *args)
cntr = PV(counter_pv)
cntr.add_callback(on_change, index = 1)
globals.exitq.get()
cntr.clear_callbacks()
def __init__(self, pvname, pvnumber=None, rbv=None, pvtype=None):
if pvnumber and not pvname:
pvname = PV(pvPrefix + ':SCANPV' + str(pvnumber) + ':PVNAME').get()
self.pvname = pvname
if self.pvname:
self.pvnumber = pvnumber
self.rbv = rbv
# Get PV type from 'PV type' menu
pvtypePv = PV(pvPrefix + ':SCANPV' + str(self.pvnumber) + ':PVTYPE')
if not pvtype: pvtype = pvtypePv.get()
# Create PV instance
if pvtype == 1:
scanpv = Motor(self.pvname, self.pvnumber)
elif pvtype == 2:
scanpv = PolluxMotor(self.pvname, self.pvnumber)
elif pvtype == 3:
scanpv = BeckhoffMotor(self.pvname, self.pvnumber)
elif pvtype == 4:
scanpv = Magnet(self.pvname, self.pvnumber)
elif pvtype == 5:
scanpv = Lakeshore(self.pvname, self.pvnumber)
else:
scanpv = BasePv(self.pvname, self.pvnumber, self.rbv)
self.scanpv = scanpv
self.pvtype = pvtype
self.pvtypePv = pvtypePv
else:
self.scanpv = ''
class BeckhoffMotor(Motor):
"""Beckhoff Motor class which inherits from pvScan Motor class."""
def __init__(self, pvname, pvnumber=0):
if 'ESB' in pvname:
rbv = pvname.split(':')[0] + ':CALC:' + ':'.join(pvname.split(':')[3:5]) + ':POS:MM'
go = pvname.split(':')[0] + ':BO:' + ':'.join(pvname.split(':')[3:5]) + ':GO:POS'
abort = pvname.split(':')[0] + ':BO:' + ':'.join(pvname.split(':')[3:5]) + ':STOP'
elif 'UEDM' in pvname:
rbv = pvname.split(':')[0] + ':UEDM:' + 'AI:' + pvname.split(':')[-2] + ':POS'
go = pvname.split(':')[0] + ':UEDM:' + 'BO:' + pvname.split(':')[-2] + ':GOPOS'
abort = pvname.split(':')[0] + ':UEDM:' + pvname.split(':')[-2] + ':STOP'
else:
rbv = pvname.split(':')[0] + ':CALC:' + ':'.join(pvname.split(':')[2:3]) + ':POS:MM'
go = pvname.split(':')[0] + ':BO:' + ':'.join(pvname.split(':')[2:3]) + ':GO:POS:ABS'
abort = pvname.split(':')[0] + ':BO:' + ':'.join(pvname.split(':')[2:3]) + ':STOP'
BasePv.__init__(self, pvname, pvnumber, rbv)
self.go = PV(go)
self.abort = PV(abort)
def move(self, val, wait=True, delta=0.005, timeout=360.0):
"""Put value and press Go button."""
PV.put(self, val)
sleep(0.2)
self.go.put(1)
if wait:
Motor.motorWait(self, val, delta, timeout)
class PolluxMotor(Motor):
"""Pollux Motor class which inherits from pvScan Motor class."""
def __init__(self, pvname, pvnumber=0):
if pvname.endswith('ACTPOS'):
rbv = pvname
velo = ':'.join(pvname.split(':')[0:2]) + ':AO:VELO'
go = ':'.join(pvname.split(':')[0:2]) + ':BO:GOABS'
abort = ':'.join(pvname.split(':')[0:2]) + ':BO:ABORT'
pvname = ':'.join(pvname.split(':')[0:2]) + ':AO:ABSMOV'
else:
rbv = ':'.join(pvname.split(':')[0:2]) + ':AI:ACTPOS'
velo = ':'.join(pvname.split(':')[0:2]) + ':AO:VELO'
go = ':'.join(pvname.split(':')[0:2]) + ':BO:GOABS'
abort = ':'.join(pvname.split(':')[0:2]) + ':BO:ABORT'
BasePv.__init__(self, pvname, pvnumber, rbv)
self.velo = PV(velo)
self.go = PV(go)
self.abort = PV(abort)
def move(self, val, wait=True, delta=0.005, timeout=360.0):
"""Put value and press Go button."""
PV.put(self, val)
sleep(0.2)
self.go.put(1)
if wait:
Motor.motorWait(self, val, delta, timeout)
def testEnumPut(self):
pv = PV(pvnames.enum_pv)
self.assertIsNot(pv, None)
pv.put('Stop')
time.sleep(0.1)
val = pv.get()
self.assertEqual(val, 0)
def __init__(self):
self.radiator = PV("BEAM:GONI:RADIATOR_INDEX")
self.diamond = PV("BEAM:GONI:RADIATOR_ID")
self.plane = PV("BEAM:CBREM:PLANE")
self.edge = PV("BEAM:CBREM:EDGE")
#self.name = PV("BEAM:GONI:RAD{:.0f}:NAME",format(self.radiator.get()))
self.name = PV("BEAM:GONI:RAD"+str(int(self.radiator.get()))+":NAME")
def connect_to_mca_pvs(med_name,nelem=4):
mcas = ["%smca%i" % (med_name,i+1) for i in range(nelem)]
for key,suff in (('REAL_TIME','ERTM'),('LIVE_TIME','ELTM'),
('CAL_OFFSET','CALO'),('CAL_SLOPE','CALS'),
('CAL_QUAD','CALQ'), ('TWO_THETA','TTH')):
for mca in mcas:
x = PV("%s.%s" % (mca,suff))
i = 0
look_for_rois = True
while look_for_rois:
i = i + 1
look_for_rois = (i < 32)
for mca in mcas:
try:
x = PV('%s.R%iNM' % (mca,i))
val = x.get()
if val == '' or val is None:
look_for_rois = False
break
except:
look_for_rois = False
break
lo = PV('%s.R%iLO' % (mca,i))
hi = PV('%s.R%iHI' % (mca,i))
return i
def __init__(self, pvNameIN, pvNameOUT, mnemonic, scalerObject=""):
StandardDevice.__init__(self, mnemonic)
# IN DXAS:DIO:bi8 # 1.0 (read TTL OUT from CCD)
# OUT DXAS:DIO:bo17 # 6.1 (write Trigger IN to CCD start acquisition)
self.pvAcquire = PV(pvNameOUT)
self.pvMonitor = PV(pvNameIN, callback=self.onAcquireChange)
self._done = self.isDone()
self.countTime = 1
def __init__(self, pvName="", pvHutchName="", mnemonic=""):
StandardDevice.__init__(self, mnemonic)
self.delay = 0.01
self.pvFilter1 = PV(pvName+":DIO:XIA:Filter1")
self.pvFilter2 = PV(pvName+":DIO:XIA:Filter2")
self.pvFilter3 = PV(pvName+":DIO:XIA:Filter3")
self.pvFilter4 = PV(pvName+":DIO:XIA:Filter4")
self.pvHutch = PV(pvHutchName)
def test_put_string_waveform(self):
write('String Array: \n')
with no_simulator_updates():
pv = PV(pvnames.string_arr_pv)
put_value = ['a', 'b', 'c']
pv.put(put_value)
get_value = pv.get(use_monitor=False, count=len(put_value))
numpy.testing.assert_array_equal(get_value, put_value)
def __init__(self):
self.eiger = EigerTest('10.130.11.111', '80')
self.arm_pv = PV('13EIG1:cam1:ARM_CMD', self.epics_cb)
self.trigger_pv = PV('13EIG1:cam1:TRIGGER_CMD', self.epics_cb)
self.disarm_pv = PV('13EIG1:cam1:DISARM_CMD', self.epics_cb)
self.ntrigger_pv = PV('13EIG1:cam1:NTRIGGER', self.epics_cb)
self.triggermode_pv = PV('13EIG1:cam1:TRIGGER_MODE', self.epics_cb)
self.sequence_id_pv = PV('13EIG1:cam1:SEQUENCE_ID')
def test_waveform_get_with_count_arg(self):
with no_simulator_updates():
wf = PV(pvnames.char_arr_pv, count=32)
val=wf.get()
self.assertEquals(len(val), 32)
val=wf.get(count=wf.nelm)
self.assertEquals(len(val), wf.nelm)
def test_get1(self):
write('Simple Test: test value and char_value on an integer\n')
with no_simulator_updates():
pv = PV(pvnames.int_pv)
val = pv.get()
cval = pv.get(as_string=True)
self.failUnless(int(cval)== val)
def test_get1(self):
write('Simple Test: test value and char_value on an integer\n')
pause_updating()
pv = PV(pvnames.int_pv)
val = pv.get()
cval = pv.get(as_string=True)
self.failUnless(int(cval)== val)
resume_updating()
class Shutter(object):
def __init__(self, pvname):
self.out_pv = PV(pvname)
def open(self):
self.out_pv.put(str(1))
def close(self):
self.out_pv.put(str(0))
def get(d, pv_name, size, start, pid):
pv = PV(pv_name)
if pv.wait_for_connection(timeout=1.0):
d[pv_name] = pv.get(use_monitor=False)
else:
d[pv_name] = 'not connected'
if len(d) == size:
print int(round((time.time() - start) * 1000))
os.kill(pid, signal.SIGTERM)
def test_put_string_waveform_zero_length_strings(self):
write('String Array: put zero length strings\n')
with no_simulator_updates():
pv = PV(pvnames.string_arr_pv)
put_value = ['', '', '']
pv.put(put_value, wait=True)
time.sleep(0.05)
get_value = pv.get(use_monitor=False, as_numpy=False)
numpy.testing.assert_array_equal(get_value, put_value)
def test_put_string_waveform_empty_list(self):
write('String Array: put empty list\n')
with no_simulator_updates():
pv = PV(pvnames.string_arr_pv)
put_value = []
pv.put(put_value, wait=True)
time.sleep(0.05)
get_value = pv.get(use_monitor=False, as_numpy=False)
self.failUnless('' == ''.join(get_value))
def test_put_string_waveform_mixed_types(self):
write('String Array: put mixed types\n')
with no_simulator_updates():
pv = PV(pvnames.string_arr_pv)
put_value = ['a', 2, 'b']
pv.put(put_value, wait=True)
time.sleep(0.05)
get_value = pv.get(use_monitor=False, as_numpy=False)
numpy.testing.assert_array_equal(get_value, ['a', '2', 'b'])
def testA_CreatedWithConn(self):
write('Simple Test: create pv with conn callback\n')
pv = PV(pvnames.int_pv,
connection_callback=onConnect)
val = pv.get()
global CONN_DAT
conn = CONN_DAT.get(pvnames.int_pv, None)
self.assertEqual(conn, True)
class Shutter(object):
def __init__(self):
self.out_pv = PV('34idc:softGlue:OR-1_IN2_Signal')
def open(self):
self.out_pv.put(str(1))
def close(self):
self.out_pv.put(str(0))
def test_put_string_waveform_single_element(self):
write('String Array: put single element\n')
with no_simulator_updates():
pv = PV(pvnames.string_arr_pv)
put_value = ['a']
pv.put(put_value, wait=True)
time.sleep(0.05)
get_value = pv.get(use_monitor=False, as_numpy=False)
self.failUnless(put_value[0] == get_value)
def connect(self):
self.config = json.loads(self.scandb.get_config('qxafs').notes)
pulse_channel = "%sCurrentChannel" % self.config['mcs_prefix']
self.pulse_pv = PV(pulse_channel, callback=self.onPulse)
self.idarray_pv = PV(self.config['id_array_pv'])
self.iddrive_pv = PV(self.config['id_drive_pv'])
self.idbusy_pv = PV(self.config['id_busy_pv'])
self.pulsecount_pv = PV(PULSECOUNT_PVNAME)
self.heartbeat_pv = PV(HEARTBEAT_PVNAME)
def move(self, val, wait=False, delta=0.005, timeout=300.0):
"""Put with optional wait."""
PV.put(self,val)
if wait or self.rbv:
if not self.delta:
delta = delta
else:
delta = self.delta
self.pvWait(val, delta, timeout)
def init_var_channels(beamlineComm):
global var_channel_list,beamlineStateChannel
beamlineStateChannel = PV(beamlineComm + "beamlineState")
beamlineStateChannel.put(0)
for varname in list(stateVars.keys()):
var_channel_list[varname] = PV(beamlineComm + varname)
# beamline_support.pvPut(var_channel_list[varname],stateVars[varname])
var_channel_list[varname].add_callback(var_list_item_changeCb,varname=varname)
def main(argv=None):
global simulate
global fp
global shut_open
global current
#parse command line options
usage = "usage: %prog [options]\nData files are written to /data/<year>/<month>/<day>/"
parser = OptionParser(usage)
parser.add_option("--detname",
action="store",
type="string",
dest="detname",
help="detector PV base")
parser.add_option("--xstart",
action="store",
type="float",
dest="xo",
help="starting X position")
parser.add_option("--xnumstep",
action="store",
type="int",
dest="Nx",
help="number of steps in X")
parser.add_option("--xstepsize",
action="store",
type="float",
dest="dx",
help="step size in X")
parser.add_option("--ystart",
action="store",
type="float",
dest="yo",
help="starting Y position")
parser.add_option("--ynumstep",
action="store",
type="int",
dest="Ny",
help="number of steps in Y")
parser.add_option("--ystepsize",
action="store",
type="float",
dest="dy",
help="step size in Y")
parser.add_option("--wait",
action="store",
type="float",
dest="stall",
help="wait at each step [seconds]")
parser.add_option("--simulate",
action="store_true",
dest="sim",
default=False,
help="simulate motor moves")
parser.add_option("--checkbeam",
action="store_true",
dest="checkbeam",
default=False,
help="only acquire when beam is on")
parser.add_option("--acqtime",
action="store",
type="float",
dest="acqt",
help="image integration time [sec]")
(options, args) = parser.parse_args()
#open log file
D0 = time.localtime()[0]
D1 = time.localtime()[1]
D2 = time.localtime()[2]
D3 = time.localtime()[3]
D4 = time.localtime()[4]
cd = os.getcwd()
filedir = '/nfs/xf05id1/data/'
if sys.argv[0][0] == '.':
out_filename=filedir+repr(D0)+'/'+repr(D1)+'/'+repr(D2)+'/'+'log_'+repr(D3)+'_'+repr(D4)+'_'+\
string.split(string.strip(sys.argv[0],'./'),'/')[0]+'.txt'
else:
out_filename=filedir+repr(D0)+'/'+repr(D1)+'/'+repr(D2)+'/'+'log_'+repr(D3)+'_'+repr(D4)+'_'+\
string.split(string.strip(sys.argv[0],'./'),'/')[5]+'.txt'
try:
os.chdir(filedir + repr(D0))
except OSError:
try:
os.mkdir(filedir + repr(D0))
except Exception:
print 'cannot create directory: ' + '/data/' + repr(D0)
sys.exit()
try:
os.chdir(filedir + repr(D0) + '/' + repr(D1))
except OSError:
try:
os.mkdir(filedir + repr(D0) + '/' + repr(D1))
except Exception:
print 'cannot create directory: ' + '/data/' + repr(
D0) + '/' + repr(D1)
sys.exit()
try:
os.chdir(filedir + repr(D0) + '/' + repr(D1) + '/' + repr(D2))
except OSError:
try:
os.mkdir(filedir + repr(D0) + '/' + repr(D1) + '/' + repr(D2))
except Exception:
print 'cannot create directory: ' + filedir + repr(
D0) + '/' + repr(D1) + '/' + repr(D2)
sys.exit()
try:
fp = open(out_filename, 'a')
except Exception:
print 'cannot open file: ' + out_filename
sys.exit()
os.chdir(cd)
fp.write('#' + ', '.join(sys.argv))
fp.write('\n')
H5path = '/epics/data/201507/300126'
#initialize PVs and callbacks
if options.detname == None:
# detstr='XF:03IDA-BI{FS:1-CAM:1}'
detstr = ''
print "must provide detector pv base, e.g., 'XF:28IDA-BI{URL:01}'"
sys.exit()
else:
detstr = options.detname
xmotname = 'XF:05IDD-ES:1{Stg:Smpl1-Ax:X}'
ymotname = 'XF:05IDD-ES:1{Stg:Smpl1-Ax:Y}'
xmot = PV(xmotname + 'Mtr.VAL')
xmot_cur = PV(xmotname + 'Mtr.RBV')
ymot = PV(ymotname + 'Mtr.VAL')
ymot_cur = PV(ymotname + 'Mtr.RBV')
shut_status = PV('SR:C05-EPS{PLC:1}Shutter:Sum-Sts')
beam_current = PV('SR:C03-BI{DCCT:1}I:Total-I')
#transmission
#check command line options
if options.yo == None:
print "must provide a starting point in the vertical"
sys.exit()
else:
yo = options.yo
if options.xo == None:
print "must provide a starting point in the horizontal"
sys.exit()
else:
xo = options.xo
if options.dx == None:
dx = 0.00000001
else:
dx = options.dx
if options.dy == None:
dy = 0.00000001
else:
dy = options.dy
if options.Nx == None:
Nx = 0
else:
Nx = options.Nx
if options.Ny == None:
Ny = 0
else:
Ny = options.Ny
if options.stall == None:
twait = 0.
else:
twait = options.stall
diode0 = PV(detstr + 'Cur:I0-I')
diode1 = PV(detstr + 'Cur:I1-I')
diode2 = PV(detstr + 'Cur:I2-I')
diode3 = PV(detstr + 'Cur:I3-I')
x3acq = PV('XSPRESS3-EXAMPLE:Acquire')
x3erase = PV('XSPRESS3-EXAMPLE:ERASE')
x3acqtime = PV('XSPRESS3-EXAMPLE:AcquireTime')
x3acqnum = PV('XSPRESS3-EXAMPLE:NumImages')
x3tmode = PV('XSPRESS3-EXAMPLE:TriggerMode')
x3h5path = PV('XSPRESS3-EXAMPLE:HDF5:FilePath')
x3h5fname = PV('XSPRESS3-EXAMPLE:HDF5:FileName')
x3h5fnum = PV('XSPRESS3-EXAMPLE:HDF5:FileNumber')
x3h5capture = PV('XSPRESS3-EXAMPLE:HDF5:Capture')
#report ROIs for channels and counts at each point
x3ch1roi0min = PV('XSPRESS3-EXAMPLE:C1_MCA_ROI1_LLM')
x3ch1roi0max = PV('XSPRESS3-EXAMPLE:C1_MCA_ROI1_HLM')
x3ch1roi0ct = PV('XSPRESS3-EXAMPLE:C1_ROI1:Value_RBV')
x3ch1roi1min = PV('XSPRESS3-EXAMPLE:C1_MCA_ROI2_LLM')
x3ch1roi1max = PV('XSPRESS3-EXAMPLE:C1_MCA_ROI2_HLM')
x3ch1roi1ct = PV('XSPRESS3-EXAMPLE:C1_ROI2:Value_RBV')
x3ch1roi2min = PV('XSPRESS3-EXAMPLE:C1_MCA_ROI3_LLM')
x3ch1roi2max = PV('XSPRESS3-EXAMPLE:C1_MCA_ROI3_HLM')
x3ch1roi2ct = PV('XSPRESS3-EXAMPLE:C1_ROI3:Value_RBV')
x3ch2roi0min = PV('XSPRESS3-EXAMPLE:C2_MCA_ROI1_LLM')
x3ch2roi0max = PV('XSPRESS3-EXAMPLE:C2_MCA_ROI1_HLM')
x3ch2roi0ct = PV('XSPRESS3-EXAMPLE:C2_ROI1:Value_RBV')
x3ch2roi1min = PV('XSPRESS3-EXAMPLE:C2_MCA_ROI2_LLM')
x3ch2roi1max = PV('XSPRESS3-EXAMPLE:C2_MCA_ROI2_HLM')
x3ch2roi1ct = PV('XSPRESS3-EXAMPLE:C2_ROI2:Value_RBV')
x3ch2roi2min = PV('XSPRESS3-EXAMPLE:C2_MCA_ROI3_LLM')
x3ch2roi2max = PV('XSPRESS3-EXAMPLE:C2_MCA_ROI3_HLM')
x3ch2roi2ct = PV('XSPRESS3-EXAMPLE:C2_ROI3:Value_RBV')
x3ch3roi0min = PV('XSPRESS3-EXAMPLE:C3_MCA_ROI1_LLM')
x3ch3roi0max = PV('XSPRESS3-EXAMPLE:C3_MCA_ROI1_HLM')
x3ch3roi0ct = PV('XSPRESS3-EXAMPLE:C3_ROI1:Value_RBV')
x3ch3roi1min = PV('XSPRESS3-EXAMPLE:C3_MCA_ROI2_LLM')
x3ch3roi1max = PV('XSPRESS3-EXAMPLE:C3_MCA_ROI2_HLM')
x3ch3roi1ct = PV('XSPRESS3-EXAMPLE:C3_ROI2:Value_RBV')
x3ch3roi2min = PV('XSPRESS3-EXAMPLE:C3_MCA_ROI3_LLM')
x3ch3roi2max = PV('XSPRESS3-EXAMPLE:C3_MCA_ROI3_HLM')
x3ch3roi2ct = PV('XSPRESS3-EXAMPLE:C3_ROI3:Value_RBV')
#claim ROI 4 for our own use. we will integrate over all 4096 channels.
x3ch1roi3min = PV('XSPRESS3-EXAMPLE:C1_MCA_ROI4_LLM')
x3ch1roi3max = PV('XSPRESS3-EXAMPLE:C1_MCA_ROI4_HLM')
x3ch1roi3ct = PV('XSPRESS3-EXAMPLE:C1_ROI4:Value_RBV')
x3ch2roi3min = PV('XSPRESS3-EXAMPLE:C2_MCA_ROI4_LLM')
x3ch2roi3max = PV('XSPRESS3-EXAMPLE:C2_MCA_ROI4_HLM')
x3ch2roi3ct = PV('XSPRESS3-EXAMPLE:C2_ROI4:Value_RBV')
x3ch3roi3min = PV('XSPRESS3-EXAMPLE:C3_MCA_ROI4_LLM')
x3ch3roi3max = PV('XSPRESS3-EXAMPLE:C3_MCA_ROI4_HLM')
x3ch3roi3ct = PV('XSPRESS3-EXAMPLE:C3_ROI4:Value_RBV')
xmot_cur.get()
ymot_cur.get()
norm0 = PV('XF:05IDD-BI:1{BPM:01}.S20')
norm1 = PV('XF:05IDD-BI:1{BPM:01}.S21')
norm2 = PV('XF:05IDD-BI:1{BPM:01}.S22')
norm3 = PV('XF:05IDD-BI:1{BPM:01}.S23')
xmot_cur.add_callback(cbfx)
ymot_cur.add_callback(cbfy)
shut_status.add_callback(cbf_shut)
beam_current.add_callback(cbf_curr)
xmot_cur.run_callbacks()
ymot_cur.run_callbacks()
shut_status.run_callbacks()
beam_current.run_callbacks()
x3h5path.put(H5path)
x3h5fname.put(repr(D3) + '_' + repr(D4) + '_')
x3h5fnum.put(0)
x3acqtime.put(options.acqt)
x3acqnum.put(1)
x3tmode.put(1)
x3ch1roi3min.put(0)
x3ch2roi3min.put(0)
x3ch3roi3min.put(0)
x3ch1roi3max.put(4096)
x3ch2roi3max.put(4096)
x3ch3roi3max.put(4096)
str = '#Start time is ' + time.asctime()
print str
fp.write(str)
fp.write('\n')
str = '#[point #]\tX pos\tY pos\tch 1\tch 2\tch 3\tch 4\tBPM1\troi0\troi1\troi2\troi3\ttime'
print str
fp.write(str)
fp.write('\n')
str='# x: %(hs)6.4f ; y: %(vs)6.4f ; ROI1 %(roi1i)d:%(roi1a)d ; ROI2 %(roi2i)d:%(roi2a)d ; ROI3 %(roi3i)d:%(roi3a)d'%\
{"hs":xmot_cur.get(),"vs":ymot_cur.get(), 'roi1i':x3ch1roi1min.get(), 'roi1a':x3ch1roi1max.get(), 'roi2i':x3ch1roi2min.get(), 'roi2a':x3ch1roi2max.get(), 'roi3i':x3ch1roi3min.get(), 'roi3a':x3ch1roi3max.get(),}
print str
fp.write(str)
fp.write('\n')
roits = x3ch3roi3ct.timestamp
if options.sim is True:
str = " -----simulating motor moves and bursts-----"
print str
fp.write(str)
fp.write('\n')
time.sleep(2)
#number of rows and columns completed by scan
Ncol = Nrow = 0
LN = 0
#diode readback is now limiting factor for scan speed
oldsig = 0.
#when the cryocooler kicks in, the beam is unusable for ~3200sec
cryo = PV('XF:05IDA-OP:1{Mono:HDCM}T:LN2Out-I')
ct = cryo.get()
while (ct is None):
time.sleep(0.05)
ct = cryo.get()
t0 = time.time()
cryocounter = 0
shut_toggle = False
#nested loops for scanning z,x,y
for y in np.linspace(yo, yo + ((Ny) * dy), Ny + 1):
tar[1][0] = y
tar[1][1] = 1
if options.sim is False:
ymot.put(tar[1][0])
if indeadband(float(tar[1][0]), float(ymot_cur.get()), dbd) == 1:
tar[1][1] = 0
if Nrow % 2 == 0:
xs = 0. + xo
xe = ((Nx + 1) * dx) + xo - dx
xi = dx
else:
xs = ((Nx) * dx) + xo
xe = 0. + xo
xi = -dx
for x in np.linspace(xs, xe, Nx + 1):
tar[0][0] = x
tar[0][1] = 1
if indeadband(float(tar[0][0]), float(xmot_cur.get()), dbd) == 1:
tar[0][1] = 0
if options.sim is False:
xmot.put(tar[0][0])
while ((tar[0][1] == 1) or (tar[1][1] == 1)):
time.sleep(0.01)
signal0 = signal1 = signal2 = signal3 = 0.
nsig0 = nsig1 = nsig2 = nsig3 = 0.
sig0 = sig1 = sig2 = sig3 = 0.
time.sleep(twait)
while (options.checkbeam and (cryo.get() < (ct - 0.1))):
print "Stopped. Detected possible cryocooler activation."
time.sleep(1)
cryocounter = cryocounter + 1
#if the above is true for five cycles, the cryocooler was on, wait another 10min
if (options.checkbeam and cryocounter > 300):
print "Detected cryocooler activation, waiting 10min"
time.sleep(600)
cryocounter = 0
while (options.checkbeam
and (shut_open == False or beam_current == False)):
print "Stopped. Waiting for scan conditions to return to normal."
if shut_open == False:
shut_toggle = True
time.sleep(10.)
if shut_toggle == True:
print "Entering optics conditioning period. Waiting 5min"
time.sleep(300)
shut_toggle = False
if options.sim is False:
x3h5capture.put(1)
x3erase.put(1)
x3acq.put(1)
while signal0 == 0.:
signal0 = diode0.get()
while signal1 == 0.:
signal1 = float(diode1.get())
while (signal1 == oldsig):
time.sleep(0.05)
signal1 = diode1.get()
oldsig = signal1
while signal2 == 0.:
signal2 = diode2.get()
while signal3 == 0.:
signal3 = diode3.get()
while nsig0 == 0.:
nsig0 = float(norm0.get())
while nsig1 == 0.:
nsig1 = float(norm1.get())
while nsig2 == 0.:
nsig2 = float(norm2.get())
while nsig3 == 0.:
nsig3 = float(norm3.get())
time.sleep(options.acqt)
while (x3ch3roi3ct.timestamp == roits):
time.sleep(0.1)
roits = x3ch3roi3ct.timestamp
while (x3ch3roi3ct.timestamp == roits):
time.sleep(0.1)
sig0 = x3ch1roi0ct.get() + x3ch2roi0ct.get() + x3ch3roi0ct.get(
)
sig1 = x3ch1roi1ct.get() + x3ch2roi1ct.get() + x3ch3roi1ct.get(
)
sig2 = x3ch1roi2ct.get() + x3ch2roi2ct.get() + x3ch3roi2ct.get(
)
sig3 = x3ch1roi3ct.get() + x3ch2roi3ct.get() + x3ch3roi3ct.get(
)
roits = x3ch3roi3ct.timestamp
tn = time.time() - t0
if options.sim is False:
str = '[%(X)06d] at ( %(XC)9.4f , %(YC)9.4f ): %(d1)10.7e %(d2)10.7e %(d3)10.7e %(d4)10.7e %(norm)10.7e %(s0)10.7e %(s1)10.7e %(s2)10.7e %(s3)10.7e %(time)9.2f' % {
'X': Ncol,
'XC': xmot_cur.get(),
"YC": ymot_cur.get(),
"d1": float(signal0),
"d2": float(signal1),
"d3": float(signal2),
"d4": float(signal3),
'norm': nsig0 + nsig1 + nsig2 + nsig3,
"s0": sig0,
"s1": sig1,
"s2": sig2,
"s3": sig3,
"time": tn
}
print str
fp.write(str)
fp.write('\n')
else:
str = '[%(X)06d] at ( %(XC)8.4f , %(YC)8.4f ): %(d1)10.7e %(d2)10.7e %(d3)10.7e %(d4)10.7e' % {
"X": int(Ncol),
"XC": tar[0][0],
"YC": tar[1][0],
"d1": float(signal0),
"d2": float(signal1),
"d3": float(signal2),
"d4": float(signal3)
}
print str
fp.write(str)
fp.write('\n')
Ncol = Ncol + 1
Nrow = Nrow + 1
str = 'End time is ' + time.asctime()
print str
fp.write(str)
fp.write('\n')
fp.close()
return 0
smtp.login('*****@*****.**', 'Controle123')
subject = 'Alerta Radiação via Supervisório'
mail_de = '*****@*****.**'
mail_para = '*****@*****.**'
mail_msgm1 = 'Subject: %s\n\n%s' % (subject,'ALERTA !!\nUma das sondas de Radiação atingiu o limite da Integral em 4 horas!')
mail_msgm2 = '\n \nDiagnóstico dos dados: \n \n' + '{}: {} uSv \n{}: {} uSv \n{}: {} uSv \n'.format(thermo, valorthermo, el, valorel, berthold, valorberthold)
mail_msgm3 = '\n\nObservação: O email foi enviado pelo supervisório pois alguém apertou o botão para restaurar o sistema'
mail_msgm4 = '\n\nProteção Radiológica - SIRIUS\nGrupo de Controle\nLNLS - CNPEM'
mail_msgm = mail_msgm1 + mail_msgm2 + mail_msgm3 + mail_msgm4
smtp.sendmail(mail_de,mail_para, mail_msgm)
smtp.close()
# obj PV
thermo = PV('RAD:THERMO:DoseIntegral')
Else = PV('RAD:ELSE:DoseIntegral')
berthold = PV('RAD:Berthold:DoseIntegral')
# Pegando o valor do obj PV
pvthermo = thermo.value
pvelse = Else.value
pvberthold = berthold.value
# nome das PVs
namethermo = 'Thermo'
nameelse = 'Else'
nameberthold = 'Berthold'
# chama a função enviar email
send(namethermo, pvthermo, nameelse, pvelse, nameberthold, pvberthold)
class M40_Tester(Tester):
def __init__(self, path, test_name):
self.path = path + str(test_name)
Tester.__init__(self, self.path)
self.data1 = []
self.data2 = []
self.stop = 99
self.status = PV('status')
if test_name == 'epics':
self.connected = True
else:
self.connected = util.check_device(
'A1', self.proc) and self.status.get() in range(0, 4)
def io(self):
if not self.connected:
print "Device not connected"
return False
d_o = []
a_o = []
d_i = []
a_i = []
d_outs = {
1: PV('digitalOut1'),
2: PV('digitalOut2'),
3: PV('digitalOut3'),
4: PV('digitalOut4'),
5: PV('digitalOut5'),
6: PV('digitalOut6'),
7: PV('digitalOut7'),
8: PV('digitalOut8')
}
d_ins = {
1: PV('digitalIn1'),
2: PV('digitalIn2'),
3: PV('digitalIn3'),
4: PV('digitalIn4'),
5: PV('digitalIn5'),
6: PV('digitalIn6'),
7: PV('digitalIn7'),
8: PV('digitalIn8')
}
a_outs = {
1: PV('analogOut1'),
2: PV('analogOut2'),
3: PV('analogOut3'),
4: PV('analogOut4'),
5: PV('analogOut5'),
6: PV('analogOut6'),
7: PV('analogOut7'),
8: PV('analogOut8')
}
a_ins = {
1: PV('analogIn1'),
2: PV('analogIn2'),
3: PV('analogIn3'),
4: PV('analogIn4'),
5: PV('analogIn5'),
6: PV('analogIn6'),
7: PV('analogIn7'),
8: PV('analogIn8'),
}
poll(evt=1.e-5, iot=0.01)
for i in range(0, 8):
d_o.append(util.put_check(d_outs[i + 1], 1))
a_o.append(util.put_check(a_outs[i + 1], i))
d_i.append(util.pv_check(d_ins[i + 1], 1))
a_i.append(a_ins[i + 1].get() != None)
return [x for sublist in [d_i, a_i, d_o, a_o] for x in sublist]
def set_digital_outs(self):
d_o = []
d_outs = {
1: PV('digitalOut1'),
2: PV('digitalOut2'),
3: PV('digitalOut3'),
4: PV('digitalOut4'),
5: PV('digitalOut5'),
6: PV('digitalOut6'),
7: PV('digitalOut7'),
8: PV('digitalOut8')
}
poll(evt=1.e-5, iot=0.01)
for i in range(0, 8):
d_o.append(util.put_check(d_outs[i + 1], 1))
return d_o
def set_analog_outs(self):
a_o = []
a_outs = {
1: PV('analogOut1'),
2: PV('analogOut2'),
3: PV('analogOut3'),
4: PV('analogOut4'),
5: PV('analogOut5'),
6: PV('analogOut6'),
7: PV('analogOut7'),
8: PV('analogOut8')
}
poll(evt=1.e-5, iot=0.01)
for i in range(0, 8):
a_o.append(util.put_check(a_outs[i + 1], i))
return a_o
def get_digital_ins(self):
d_i = []
d_ins = {
1: PV('digitalIn1'),
2: PV('digitalIn2'),
3: PV('digitalIn3'),
4: PV('digitalIn4'),
5: PV('digitalIn5'),
6: PV('digitalIn6'),
7: PV('digitalIn7'),
8: PV('digitalIn8')
}
poll(evt=1.e-5, iot=0.01)
for i in range(0, 8):
d_i.append(util.pv_check(d_ins[i + 1], 0))
return d_i
def get_analog_ins(self):
a_i = []
a_ins = {
1: PV('analogIn1'),
2: PV('analogIn2'),
3: PV('analogIn3'),
4: PV('analogIn4'),
5: PV('analogIn5'),
6: PV('analogIn6'),
7: PV('analogIn7'),
8: PV('analogIn8'),
}
poll(evt=1.e-5, iot=0.01)
for i in range(0, 8):
a_i.append(a_ins[i + 1].get() != None)
return a_i
def enable_stopcount(self):
if not self.connected:
print "Device not connected"
return False
stop = 100
data1 = []
data2 = []
def getData1(pvname, value, **kw):
if value != 0:
data1.append(value)
def getData2(pvname, value, **kw):
if value != 0:
data2.append(value)
analog1 = PV('analogIn1')
stop_count = PV('outStopCount')
init = PV('initiate')
analog2 = PV('analogIn2')
poll(evt=1.e-5, iot=0.01)
analog1.wait_for_connection()
analog2.wait_for_connection()
init.wait_for_connection()
stop_count.wait_for_connection()
analog1.add_callback(getData1)
if util.put_check(stop_count, stop):
init.put(1)
t0 = time.time()
while time.time() - t0 < 30:
poll(evt=1.e-5, iot=0.01)
else:
print "Stopcount not set"
return False
buffered_run = len(data1)
analog2.add_callback(getData2)
time.sleep(2)
if util.put_check(stop_count, -1):
init.put(1)
t0 = time.time()
while time.time() - t0 < 30:
poll(evt=1.e-5, iot=0.01)
else:
print "Stopcount not set 2nd time"
return False
unbuffered_run = len(data2)
return buffered_run, unbuffered_run
def init(self):
if not self.connected:
print "Device not conncted"
return False
init = PV('initiate')
a_in_1 = PV('analogIn1')
poll(evt=1.e-5, iot=0.01)
before_init = a_in_1.get()
init.put(1)
poll(evt=1, iot=1)
after_init = a_in_1.get()
return before_init, after_init
def abort(self):
if not self.connected:
print "Device not conncted"
return False
init = PV('initiate')
data = []
a_in_1 = PV('analogIn1')
poll(evt=1.e-5, iot=0.01)
def getData1(pvname, value, **kw):
if value != 0:
data.append(value)
a_in_1.add_callback(getData1)
poll(evt=1.e-5, iot=0.01)
init.put(1)
poll(evt=1.e-5, iot=0.01)
t0 = time.time()
while time.time() - t0 < 10:
poll(evt=1.e-5, iot=0.01)
if len(data) >= 50:
init.put(0)
time.sleep(2)
return len(data)
def stopcount_value(self):
if not self.connected:
print "Device not connected"
return False
#util.pv_check('status', 0)
#self.stop = 1001
data1 = []
data2 = []
def getData1(pvname, value, **kw):
if value != 0:
data1.append(value)
def getData2(pvname, value, **kw):
if value != 0:
data2.append(value)
analog1 = PV('analogIn1')
stop_count = PV('outStopCount')
init = PV('initiate')
analog2 = PV('analogIn2')
poll(evt=1.e-5, iot=0.01)
analog1.wait_for_connection()
analog2.wait_for_connection()
init.wait_for_connection()
stop_count.wait_for_connection()
util.put_check(stop_count, 100)
analog1.add_callback(getData1)
init.put(1)
poll(evt=1.e-5, iot=0.01)
t0 = time.time()
while time.time() - t0 < 10:
poll(evt=1.e-5, iot=0.01)
first_run = len(data1)
analog1.remove_callback(0)
analog1.add_callback(getData2)
time.sleep(2)
util.put_check(stop_count, 200)
init.put(1)
poll(evt=1.e-5, iot=0.01)
t0 = time.time()
while time.time() - t0 < 10:
poll(evt=1.e-5, iot=0.01)
second_run = len(data2)
return first_run, second_run
def io(self):
if not self.connected:
print "Device not connected"
return False
d_o = []
a_o = []
d_i = []
a_i = []
d_outs = {
1: PV('digitalOut1'),
2: PV('digitalOut2'),
3: PV('digitalOut3'),
4: PV('digitalOut4'),
5: PV('digitalOut5'),
6: PV('digitalOut6'),
7: PV('digitalOut7'),
8: PV('digitalOut8')
}
d_ins = {
1: PV('digitalIn1'),
2: PV('digitalIn2'),
3: PV('digitalIn3'),
4: PV('digitalIn4'),
5: PV('digitalIn5'),
6: PV('digitalIn6'),
7: PV('digitalIn7'),
8: PV('digitalIn8')
}
a_outs = {
1: PV('analogOut1'),
2: PV('analogOut2'),
3: PV('analogOut3'),
4: PV('analogOut4'),
5: PV('analogOut5'),
6: PV('analogOut6'),
7: PV('analogOut7'),
8: PV('analogOut8')
}
a_ins = {
1: PV('analogIn1'),
2: PV('analogIn2'),
3: PV('analogIn3'),
4: PV('analogIn4'),
5: PV('analogIn5'),
6: PV('analogIn6'),
7: PV('analogIn7'),
8: PV('analogIn8'),
}
poll(evt=1.e-5, iot=0.01)
for i in range(0, 8):
d_o.append(util.put_check(d_outs[i + 1], 1))
a_o.append(util.put_check(a_outs[i + 1], i))
d_i.append(util.pv_check(d_ins[i + 1], 1))
a_i.append(a_ins[i + 1].get() != None)
return [x for sublist in [d_i, a_i, d_o, a_o] for x in sublist]
class OceanOpticsSpectrometer(ImageHDF):
# CONSTRUCTOR OF Ocean CLASS
def __init__(self,
mnemonic,
pv=None,
responseTimeout=15,
output="./out",
numPoints=1044,
mcas=False):
"""Constructor
responseTimeout : how much time to wait qe65000 answer
numPoints : how many points are collected each time
"""
super().__init__(mnemonic, numPoints, output, 'ocean')
self.acquireChanged = Event()
self.acquiring = False
try:
# determines the start of counting
self.pvStart = PV(pv + ":Acquire")
# determines mode of Acquisition (Single,Continous, Dark Spectrum)
self.pvAcquireMode = PV(pv + ":AcquisitionMode")
# use darkcorrection
self.pvDarkCorrection = PV(pv + ":ElectricalDark")
# spectrum
self.pvSpectrum = PV(pv + ":Spectra")
self.pvSpectrumCorrected = PV(pv + ":DarkCorrectedSpectra")
# set Acquire Time
self.pvAcquireTime = PV(pv + ":SetIntegration")
# integration Time
self.pvTime = PV(pv + ":IntegrationTime:Value")
# control the end of acquire process
self.pvAcquire = PV(pv + ":Acquiring")
self.pvAcquire.add_callback(self.statusChange)
# acquisition mode
self.pvAcMode = PV(pv + ":AcquisitionMode")
# set to single mode
self.pvAcMode.put("Single")
# axis Spectra
pvAxis = PV(pv + ":SpectraAxis")
self.axis = pvAxis.get(as_numpy=True)[:self.numPoints]
# regions of interest
self.ROIS = []
self.mcas = mcas
self.responseTimeout = responseTimeout
self.timer = Timer(self.responseTimeout)
except TypeError:
raise RuntimeError('PV not found')
except ValueError:
raise RuntimeError('Device is offline')
def statusChange(self, value, **kw):
"""
Helper callback used to wait for the end of the acquisition.
"""
if value == 0:
self.acquiring = False
else:
self.acquiring = True
# threads waiting are awakened
self.acquireChanged.set()
def setCountTime(self, time):
"""
Method to set the count time of a scaler device.
Parameters
----------
time : `float`
Count time to set to scaler device .
Returns
-------
out : None
"""
self.pvTime.put(time, wait=True)
self.timer = Timer(time + self.responseTimeout)
def getCountTime(self):
return self.pvTime.get()
def setCountStop(self):
# TODO: test
# Work only when in continuos mode
pass
def close(self):
self.setCountStop()
def saveUniquePoint(self, data, fmt, suffixName=""):
self.mcaFile = super().nameFile(self.output, self.prefix + suffixName,
"mca")
np.savetxt(self.mcaFile, data, fmt=fmt)
def saveSpectrum(self, **kwargs):
''' save the spectrum intensity in a mca file or an hdf file '''
dark = self.pvDarkCorrection.get()
# the spectra come from different pv if use darkcorrection
if dark == 1:
allSpectrum =\
self.pvSpectrumCorrected.get(as_numpy=True)[:self.numPoints]
else:
allSpectrum = self.pvSpectrum.get(as_numpy=True)[:self.numPoints]
self.spectrum = allSpectrum
suffix = ""
if self.image:
super().saveSpectrum()
if not self.image or self.mcas:
self.saveUniquePoint(
np.array([self.axis, self.spectrum]).T, "%f\t%f")
# there are ROIS to save / works only for points
if len(self.ROIS) > 0 and not self.image:
i = 1
for mini, maxi in self.ROIS:
# get the spectrum positions
start = bisect(self.axis, mini)
end = bisect(self.axis, maxi)
roi = allSpectrum[start:end]
self.spectrum = roi
data = np.array([self.axis[start:end], self.spectrum]).T
self.saveUniquePoint(data,
"%f\t%f",
suffixName="_ROI" + str(i))
i += 1
def isCountRunning(self):
return (self.acquiring)
def wait(self):
"""
Blocks until the acquisition completes.
"""
if self.acquiring is False:
return
self.acquireChanged.clear()
# while acquiring and not time out waits
# TODO: find a better way to do this
while self.acquiring and self.timer.check():
self.acquireChanged.wait(0.001)
self.acquireChanged.clear()
if self.timer.expired():
raise RuntimeError('Ocean is not answering')
def canMonitor(self):
""" Returns false indicating cannot be use as a counter monitor"""
return False
def canStopCount(self):
"""
Returns true indicating that Dxp has a stop command.
"""
return False
def getValue(self, **kwargs):
"""Return intensity
It's a dummy method, always return 1.0. """
self.saveSpectrum()
return 1.0
def isCounting(self):
return self.acquiring
def startCount(self):
""" Starts acquiring an spectrum
It's necessary to call setCounTime before"""
if self.acquiring:
raise RuntimeError('Already counting')
self.acquiring = True
self.pvStart.put("Stop")
# resets initial time value
self.timer.mark()
def stopCount(self):
self.setCountStop()
def setPresetValue(self, channel, val):
"""Dummy method"""
pass
def startCollectImage(self, rows=0, cols=0):
super().startCollectImage('float32', rows, cols)
def addRoi(self, roi):
""" Insert a new roi
roi: a tuple with begin and end: (begin,end)"""
self.ROIS.append(roi)
def output_cspad_streak(ds=None,
alias='DscCsPad',
pvbase='CXI:SC1:DIFFRACT',
nevents=10,
**kwargs):
"""
Output cspad jet streak information
"""
beam_x_pv = PV(':'.join([pvbase, 'X0']))
beam_y_pv = PV(':'.join([pvbase, 'Y0']))
streak_angle_pv = PV(':'.join([pvbase, 'STREAK_PHI']))
streak_intensity_pv = PV(':'.join([pvbase, 'STREAK_INTENSITY']))
streak_width_pv = PV(':'.join([pvbase, 'STREAK_WIDTH']))
if not ds:
ds = DataSource(**kwargs)
# Now set in epics -- update as needed from epics.
# beam_x_pv.put(2094.9301668334006) # run 104
# beam_y_pv.put(-1796.5697333657126)
detector = ds._detectors[alias]
detector.next()
detector.add.property(asic)
cy, cx = get_center(detector, beam_x_pv, beam_y_pv)
j_map_1, j_map_2 = find_proj_mapping(cy, cx)
detector.add.parameter(proj_map_1=j_map_1, proj_map_2=j_map_2)
detector.add.property(streak_angle_raw)
detector.add.property(streak_present)
try:
iloop = 0
time0 = time.time()
while True:
streak_angle = detector.streak_angle_raw[0]
streak_intensity = detector.streak_angle_raw[1]
streak_width = detector.streak_angle_raw[2]
streak_angle_pv.put(streak_angle)
streak_intensity_pv.put(streak_intensity)
streak_width_pv.put(streak_width)
if not (iloop + 1) % nevents and detector.streak_present:
evt_rate = iloop / (time.time() - time0)
print('{:15} {:6.1f} Hz {:5.1f} {:5.1f} {:5.3f} {}'
''.format(iloop, evt_rate, streak_angle,
streak_intensity, streak_width,
int(detector.streak_present)))
iloop += 1
detector.next()
except KeyboardInterrupt:
return
from epics import PV
pv = PV('OPS:message1')
val = pv.get()
print(val)
def _get_pv(self, pvname):
if not pvname in self._pvs:
self._pvs[pvname] = PV(pvname)
return self._pvs[pvname]
from eco.devices_general.alvradetectors import DIAClient
bsdaqJF = DIAClient(
"bsdaqJF",
instrument="alvra",
api_address="http://sf-daq-alvra:10000",
jf_name="JF_4.5M",
)
try:
bsdaqJF.pgroup = int(exp_config["pgroup"][1:])
except:
print("Could not set p group in bsdaqJF !!")
checkerPV = PV("SARFE10-PBPG050:HAMP-INTENSITY-CAL")
def checker_function(limits):
cv = checkerPV.get()
if cv > limits[0] and cv < limits[1]:
return True
else:
return False
checker = {}
checker["checker_call"] = checker_function
checker["args"] = [[100, 300]]
checker["kwargs"] = {}
checker["wait_time"] = 3
class SensorOcean(QThread):
'''
SensorOcean is a class that acquires spectrogram from OceanOpticsSpectrometer
and calculates the two most important peaks to calculate pressure
'''
error_message = pyqtSignal(str)
signal = pyqtSignal([np.ndarray])
def __init__(self, pvname):
QThread.__init__(self)
self.pvname = pvname
try:
self.createOcean()
except RuntimeError:
self.ocean = None
def createOcean(self):
self.numPoints = 2048
self.mnemonic = str(int(time.time()))
self.ocean = OceanOpticsSpectrometer(self.mnemonic, pv=self.pvname, numPoints=self.numPoints)
createCounter(self.mnemonic, self.ocean)
# disable graph and fitscan
setPlotGraph(False)
setFitScan(False)
self.pvProgressBar = PV(self.pvname + ':ProgressBar')
if self.pvProgressBar.get() <= 1:
if (self.ocean.pvStart.get() == "Start"):
self.ocean.pvStart.put("Stop")
self.pvProgressBar.add_callback(self.searchPeaks)
def editIntegrationTime(self, timeValue):
''' Edit integration time '''
''' It was developed due to a good interface user style'''
try:
self.timeValue = timeValue
self.ocean.pvTime.put(value = timeValue, wait = True)
return True
except:
return False
def isReady(self):
# if ocean is disconnected cannot run
if self.ocean is None:
try:
self.createOcean()
except RuntimeError:
return False
return True
def searchPeaks(self,pvname=None, value=None,
char_value=None, **kws):
try:
if (char_value is not None) and (float(char_value) >= 100):
start = time.time()
''' Defining which data is X or Y '''
ydata = self.getYdata()
xdata = self.getXdata()
''' Selecting peaks and getting the respective wavelength '''
wavelength = indexes(ydata,xdata)
#wavelength = np.array([695,694])
print('wavelength',wavelength)
''' Filtering situations to emit signal'''
if wavelength is not None:
self.signal.emit(wavelength)
else:
self.signal.emit(np.array([-1]))
stop = time.time()
print('Time exec: ',(stop-start))
except OSError as err:
self.error_message.emit("Fatal exception error! Close E-MA application! ->"
+ str(err))
def getYdata(self):
''' Getting Y data '''
dark = self.ocean.pvDarkCorrection.get()
''' The spectra come from different pv if use darkcorrection '''
if dark == 1:
allSpectrum =self.ocean.pvSpectrumCorrected.get(as_numpy=True)[:self.numPoints]
elif dark == 0:
allSpectrum = self.ocean.pvSpectrum.get(as_numpy=True)[:self.numPoints]
else:
allSpectrum = 0
return allSpectrum
def getXdata(self):
''' Getting X data '''
return self.ocean.axis #I need to test if axis X will have the same range regardless of time'''
def saveData(self,pathComp,peak1zero = 692.80,peak2zero = 694.26,temp = 300.00):
try:
np.savetxt(pathComp,
np.array([self.getXdata(), self.getYdata()]).T,
fmt="%f\t%f", header = self.headerData(peak1zero,peak2zero,temp))
if ((os.path.isfile(pathComp))):
self.error_message.emit("Spectrogram data saved!"
+ str(' See:') + pathComp)
return True
else:
self.error_message.emit("Average file not saved. Error saving file.")
return False
except OSError as err:
self.error_message.emit("Average file not saved. Error saving file: "
+ str(err))
return False
def headerData(self,peak1 = 692.80,peak2 = 694.26,temp = 300.00):
itime = '\n Integration time (s): ' + str(self.timeValue)
peaks1 = '\nPeak1 (nm): ' + str(peak1)
peaks2 = '\nPeak2 (nm): ' + str(peak2)
temp = '\nTemperature (K): ' + str(temp)
clocktime = '\nSaved at: ' + time.strftime("%a, %d %b %Y %H:%M:%S", time.localtime())
return HEADER + DEVICE + itime + PAPERS + STANDARD + peaks1 + peaks2 + temp + clocktime + LEGEND
def run(self):
import time
while(True):
try:
#start = time.time()
''' Getting data from PV'''
dark = self.ocean.pvDarkCorrection.get()
print('Dark value: ', dark)
if dark is None:
break
else:
#self.searchPeaks(dark)
sleep(self.scantime)
#stop = time.time()
#print('Time exec: ',(stop-start))
except OSError as err:
self.error_message.emit("Error on automatic search peak: "
+ str(err))
break
def oneread(self):
try:
''' Getting data from PV'''
dark = self.ocean.pvDarkCorrection.get()
print('Dark value: ', dark)
if dark is not None:
self.searchPeaks(dark)
except OSError as err:
self.error_message.emit("Error on automatic search peak: "
+ str(err))
return response
file_datetime = datetime.datetime.now().strftime('%Y%m%d.%H%M%S')
print('file identifier:', file_datetime)
# Create any directories needed
BASEDIR = 'Tests_3.0m/' + device
#os.makedirs(BASEDIR)
rawfo = open(BASEDIR + '/data_' + file_datetime + '.dat', 'w')
asynpv = 'SR:C11-ID:G1{IVU20:1}Asyn'
pvid = 'SR:C11-ID:G1{IVU20:1'
aout = PV('SR:C04-ID:G1{IVU:1}Asyn.AOUT')
ainp = PV('SR:C04-ID:G1{IVU:1}Asyn.AINP')
gap_set = PV(pvid + '-Mtr:2}Inp:Pos')
start = PV(pvid + '-Mtr:2}Sw:Go.PROC')
# Servo interrupt time (need for gather period)
i10 = float(command('I10'))
servo_interrupt_time = i10 / 8388608. / 1e3
gather_period = sample_time / nsamples / servo_interrupt_time
print('gather period', gather_period)
sample_period = int(gather_period) * servo_interrupt_time
total_time = sample_period * nsamples
print('total_time', total_time)
rawfo.write(str(sample_period) + '\n')
import time
bval = 0
def func(x, a, b, c):
return a * np.exp(-(x - b)**2 / (2 * c**2))
def onChanges(pvname=None, value=None, char_value=None, **kw):
global bval
bval = value
return
mypv = PV('LEBT-DIAG:WS002:BValue')
mypv.add_callback(onChanges)
t0 = time.time()
"""while time.time() - t0 < 5.0:"""
while True:
bvalue = bval
if bvalue:
x = np.linspace(-10, 10, 100)
"""y = func(x, 2, 0, 2)"""
y = func(x, 1e-5, 0, 3)
np.random.seed(int(time.time()))
yn = y + 0.2 * np.random.normal(size=len(x))
popt, pcov = curve_fit(func, x, yn)
print(popt)
wavepv = PV('LEBT-DIAG:WS002:WValue')
class Motoman(StandardDevice):
def finish(self, value, **kw):
if value == "Done":
self.motomanfinish = True
else:
self.motomanfinish = False
def __init__(self, pvPrefix="", mnemonic=""):
StandardDevice.__init__(self, mnemonic)
self.pvBVAL_RBV = PV(pvPrefix + ":BVAL_RBV")
self.pvBVAL = PV(pvPrefix + ":BVAL")
self.pvBPOS = PV(pvPrefix + ":BPOS")
self.pvSVON = PV(pvPrefix + ":SVON")
self.pvRUNNING = PV(pvPrefix + ":RUNNING")
self.pvRUNNING.add_callback(self.finish)
self.pvJOB = PV(pvPrefix + ":JOB")
self.pvGOJOB = PV(pvPrefix + ":GOJOB")
self.pvSTA1 = PV(pvPrefix + ":STA1")
self.pvSTA2 = PV(pvPrefix + ":STA2")
self.motomanfinish = False
def changeJOB(self, job=""):
self.pvJOB.put(job)
def goJOB(self):
self.pvGOJOB.put(1)
self.motomanfinish = False
while not self.motomanfinish:
sleep(0.1)
def waitFinish(self):
while not self.motomanfinish:
sleep(0.01)
def servoON(self, bool):
if ((bool != 0) and (bool != 1)):
self.pvSVON.put(0)
else:
self.pvSVON.put(bool)
def readBVAL(self):
return self.pvBVAL_RBV.get()
def setBVAL(self, val):
if ((val < 0) or (val > 50)):
self.pvBVAL.put(0)
self.pvSVON.put(0)
else:
self.pvBVAL.put(val)
def setBPOS(self, pos):
if ((pos < 0) or (pos > 2)):
self.pvBPOS.put(000)
else:
self.pvBPOS.put(pos)
def readSTA1(self):
return self.pvSTA1.get()
def readSTA2(self):
return self.pvSTA2.get()
def setSample(self, val):
self.setBPOS(0)
self.setBVAL(val)
def removeSample(self):
self.setBPOS(2)
self.setBVAL(1)
def run(self):
self.changeJOB("CICLO")
self.goJOB()
from epics import PV
from time import sleep
import datetime,os,sys
newpid=os.fork() # Run as a separate (detached) process
if newpid!=0:
sys.exit(0)
#filepath='/nfs/slac/g/nlcta/u01/nlcta/phantom/scanData/'
filepath='/home/nlcta/phantom/scanData/' # writing to local disk is faster
datalogpts=90 # total number of PV data points to log
dataint=0.5 # pause between PV data log points
xstagerbvpv=PV('ESB:XPS1:m3:MOTR.RBV')
xspeedpv=PV('ESB:XPS4:m2:MOTR.VELO')
ystagerbvpv=PV('ESB:XPS1:m4:MOTR.RBV')
rotstagerbvpv=PV('ESB:XPS1:m6:MOTR.RBV')
foilstagerbvpv=PV('ESB:XPS4:m1:MOTR.RBV')
lasershutterpv=PV('ESB:THSC01:SHUTTER:OC')
laserstopperpv=PV('ESB:BO:2124-8:BIT5')
screenpv=PV('ESB:BO:2114-1:BIT5')
lsrpwrpv=PV('ESB:A01:ADC1:AI:CH3')
toroid0355pv=PV('ESB:A01:ADC1:AI:CH4')
toroid2150pv=PV('ESB:A01:ADC1:AI:CH5')
pvlist=[lsrpwrpv,toroid0355pv,toroid2150pv,lasershutterpv,laserstopperpv,screenpv,xspeedpv,xstagerbvpv,ystagerbvpv,rotstagerbvpv,foilstagerbvpv]
#pvlist=[xstagepv,ystagepv,rotstagepv]
def __init__(self, pvPrefix="", mnemonic=""):
StandardDevice.__init__(self, mnemonic)
self.pvBVAL_RBV = PV(pvPrefix + ":BVAL_RBV")
self.pvBVAL = PV(pvPrefix + ":BVAL")
self.pvBPOS = PV(pvPrefix + ":BPOS")
self.pvSVON = PV(pvPrefix + ":SVON")
self.pvRUNNING = PV(pvPrefix + ":RUNNING")
self.pvRUNNING.add_callback(self.finish)
self.pvJOB = PV(pvPrefix + ":JOB")
self.pvGOJOB = PV(pvPrefix + ":GOJOB")
self.pvSTA1 = PV(pvPrefix + ":STA1")
self.pvSTA2 = PV(pvPrefix + ":STA2")
self.motomanfinish = False
def build_threshold_table(self, rt_d, t, force_write, ignore_pv, is_bpm):
# fist check the parameters
valid_pvs = True
bad_pv_names = ''
ro_pvs = False
ro_pv_names = '' # read-only pv names
self.force_write = force_write
self.ignore_pv = ignore_pv
for l in t:
[table_name, t_index, integrator, t_type, value] = l
table_name = table_name.lower()
t_index = t_index.lower()
integrator = integrator.lower()
t_type = t_type.lower()
if (table_name != 'lc2' and table_name != 'alt'
and table_name != 'lc1' and table_name != 'idl'):
print 'ERROR: Invalid thresholds for device {0}, table {1}, integrator {2}, threshold {3}'.\
format(rt_d.mpsdb_name, table_name, integrator, t_index)
print 'ERROR: Invalid table "{0}" (parameter={1})'.format(
l[0], l)
return False
if (not (((integrator.startswith('i')) and len(integrator) == 2
and int(integrator[1]) >= 0 and int(integrator[1]) <= 3)
or integrator == 'x' or integrator == 'y'
or integrator == 'tmit')):
print 'ERROR: Invalid thresholds for device {0}, table {1}, integrator {2}, threshold {3}'.\
format(rt_d.mpsdb_name, table_name, integrator, t_index)
print 'ERROR: Invalid integrator "{0}" (parameter={1})'.format(
integrator, l)
return False
if (not (t_index.startswith('t'))):
print 'ERROR: Invalid thresholds for device {0}, table {1}, integrator {2}, threshold {3}'.\
format(rt_d.mpsdb_name, table_name, integrator, t_index)
print 'ERROR: Invalid threshold "{0}", must start with T (parameter={1})'.format(
t_index, l)
return False
else:
if (len(t_index) != 2):
print 'ERROR: Invalid thresholds for device {0}, table {1}, integrator {2}, threshold {3}'.\
format(rt_d.mpsdb_name, table_name, integrator, t_index)
print 'ERROR: Invalid threshold "{0}", must be in T<index> format (parameter={1})'.format(
t_index, l)
return False
else:
if (table_name == 'lc2' or table_name == 'alt'):
if (int(t_index[1]) < 0 or int(t_index[1]) > 7):
print 'ERROR: Invalid thresholds for device {0}, table {1}, integrator {2}, threshold {3}'.\
format(rt_d.mpsdb_name, table_name, integrator, t_index)
print 'ERROR: Invalid threshold index "{0}", must be between 0 and 7 (parameter={1})'.\
format(t_index[1], l)
return False
else:
if (int(t_index[1]) != 0):
print 'ERROR: Invalid thresholds for device {0}, table {1}, integrator {2}, threshold {3}'.\
format(rt_d.mpsdb_name, table_name, integrator, t_index)
print 'ERROR: Invalid threshold index "{0}", must be 0'.\
format(t_index[1], l)
return False
if (not (t_type == 'lolo' or t_type == 'hihi')):
print 'ERROR: Invalid thresholds for device {0}, table {1}, integrator {2}, threshold {3}'.\
format(rt_d.mpsdb_name, table_name, integrator, t_index)
print 'ERROR: Invalid threshold type "{0}", must be LOLO or HIHI (parameter={1})'.\
format(t_type, l)
return False
# build a dictionary with the input parameters
self.table = {}
for l in t:
[table_name, t_index, integrator, t_type, value] = l
table_name = table_name.lower()
t_index = t_index.lower()
integrator = integrator.lower()
t_type = t_type.lower()
# Rename fields to match database
if (integrator == 'x'):
integrator = 'i0'
if (integrator == 'y'):
integrator = 'i1'
if (integrator == 'tmit'):
integrator = 'i2'
if (t_type == 'lolo'):
t_type = 'l'
if (t_type == 'hihi'):
t_type = 'h'
if (not table_name in self.table.keys()):
self.table[table_name] = {}
if (not t_index in self.table[table_name].keys()):
self.table[table_name][t_index] = {}
if (not integrator in self.table[table_name][t_index].keys()):
self.table[table_name][t_index][integrator] = {}
if (not t_type
in self.table[table_name][t_index][integrator].keys()):
self.table[table_name][t_index][integrator][t_type] = value
pv_name = self.mps_names.getThresholdPv(
self.mps_names.getAnalogDeviceNameFromId(rt_d.mpsdb_id),
table_name, t_index, integrator, t_type, is_bpm)
pv_name_enable = pv_name + '_EN'
pv = PV(pv_name)
pv_enable = PV(pv_name_enable)
if (t_type == 'l'):
self.table[table_name][t_index][integrator]['l_pv'] = pv
self.table[table_name][t_index][integrator][
'l_pv_enable'] = pv_enable
else:
self.table[table_name][t_index][integrator]['h_pv'] = pv
self.table[table_name][t_index][integrator][
'h_pv_enable'] = pv_enable
if (pv.host == None or pv_enable.host == None):
if (not ignore_pv):
valid_pvs = False
bad_pv_names = '{} {}'.format(bad_pv_names, pv_name)
elif (not force_write):
if (not pv.write_access):
ro_pvs = True
ro_pv_names = '{} {}'.format(ro_pv_names, pv_name)
# pp=PrettyPrinter(indent=4)
# pp.pprint(self.table)
if (not valid_pvs):
error_message = 'Cannot find PV(s)'
print(
'ERROR: The following PV(s) cannot be reached, threshold change not allowed:'
)
print(bad_pv_names)
return error_message, bad_pv_names, False
if (ro_pvs):
error_message = 'Read-only PV(s)'
print(
'ERROR: The following PV(s) are read-only, threshold change not allowed:'
)
print(ro_pv_names)
return error_message, ro_pv_names, False
return 'OK', '', True
def output_cspad_sum(ds=None,
alias='DscCsPad',
pvbase='CXI:SC1:DIFFRACT',
calc_period=True,
calc_streak=False,
psd_events=None,
psd_rate=None,
psd_resolution=None,
**kwargs):
"""Outputs cspad sum and certain statistics as PVs
Parameters
----------
ds : DataSource, optional
DataSource object, if not specified, loads it using kwargs
alias : str, optional
Name for CsPad data
pvbase : str, optional
Base for PV names
calc_period : bool, optional
Determines the execution of frequency analysis
psd_events : int, optional
Number of events for frequency analysis, default is 240
psd_rate : int or float, optional
Event rate [Hz], default is 120
psd_resolution : int, optional
Resolution setting will perform rolling mean [Hz]
"""
# Configure epics PVs
print('Initializing epics PVs')
cspad_sum_pv = PV(':'.join([pvbase, 'TOTAL_ADU']))
streak_fraction_pv = PV(':'.join([pvbase, 'STREAK_FRACTION']))
stats_mean_pv = PV(':'.join([pvbase, 'STATS_MEAN']))
stats_std_pv = PV(':'.join([pvbase, 'STATS_STD']))
stats_min_pv = PV(':'.join([pvbase, 'STATS_MIN']))
stats_max_pv = PV(':'.join([pvbase, 'STATS_MAX']))
psd_frequency_pv = PV(':'.join([pvbase, 'PSD_FREQUENCY']))
psd_amplitude_pv = PV(':'.join([pvbase, 'PSD_AMPLITUDE']))
psd_rate_pv = PV(':'.join([pvbase, 'PSD_RATE']))
psd_events_pv = PV(':'.join([pvbase, 'PSD_EVENTS']))
psd_resolution_pv = PV(':'.join([pvbase, 'PSD_RESOLUTION']))
psd_freq_min_pv = PV(':'.join([pvbase, 'PSD_FREQ_MIN']))
psd_freq_wf_pv = PV(':'.join([pvbase, 'PSD_FREQ_WF']))
psd_amp_wf_pv = PV(':'.join([pvbase, 'PSD_AMP_WF']))
# psd_amp_array_pv = PV(':'.join([pvbase,'PSD_AMP_ARRAY']))
if psd_rate:
psd_rate_pv.put(psd_rate)
psd_rate = psd_rate_pv.get()
if psd_rate > 360 or psd_rate < 10:
psd_rate = 120.
psd_rate_pv.put(psd_rate)
if psd_events:
psd_events_pv.put(psd_events)
psd_events = psd_events_pv.get()
if psd_events > 1200 or psd_events < 60:
psd_events = psd_rate * 2.
psd_events_pv.put(psd_events)
if psd_resolution:
psd_resolution_pv.put(psd_resolution)
psd_resolution = psd_resolution_pv.get()
if psd_resolution > 5 or psd_resolution < 0.1:
psd_resolution = psd_rate / float(psd_events)
psd_resolution_pv.put(psd_resolution)
nroll = int(psd_resolution * psd_events / float(psd_rate))
psd_freq_min = psd_freq_min_pv.get()
if psd_freq_min > 40 or psd_freq_min < 2:
psd_freq_min = 5.
psd_freq_min_pv.put(psd_freq_min)
if0 = int(psd_freq_min / float(psd_rate) * psd_events)
psd_freq_wf = np.arange(psd_events / 2. + 1.) * \
float(psd_rate) / float(psd_events)
psd_freq_wf_pv.put(psd_freq_wf)
print('Events = {}'.format(psd_events))
print('... done')
if not ds:
ds = DataSource(**kwargs)
print('... done')
detector = ds._detectors[alias]
detector.next()
detector.add.property(asic)
detector.add.property(streak_present)
try:
no_streak = []
iloop = 0
icheck = 0
streaks = 0
time0 = time.time()
time_last = time0
sums = []
# aPxx = []
# atime = []
while True:
cspad_sum = detector.corr.sum()
sums.append(cspad_sum)
cspad_sum_pv.put(cspad_sum)
if calc_streak:
streak = detector.streak_present
streaks += streak
if not streak:
no_streak.append(iloop)
iloop += 1
icheck += 1
if not iloop % psd_events:
sums = np.asarray(sums)
det_avg = sums.mean()
det_std = sums.std()
det_max = sums.max()
det_min = sums.min()
stats_mean_pv.put(det_avg)
stats_max_pv.put(det_max)
stats_min_pv.put(det_min)
stats_std_pv.put(det_std)
if calc_period:
# f should be same as psd_freq_wf
f, Pxx = periodogram(sums, psd_rate)
if nroll > 1:
Pxx = pd.DataFrame(Pxx).rolling(nroll).mean().values[
nroll:, 0]
f = f[nroll:]
psd_frequency = f[Pxx[if0:].argmax() + if0]
psd_amplitude = Pxx[if0:].max() / 4 * psd_rate / psd_events
psd_frequency_pv.put(psd_frequency)
psd_amplitude_pv.put(psd_amplitude)
psd_amp_wf_pv.put(Pxx)
time_next = time.time()
evtrate = icheck / (time_next - time_last)
icheck = 0
time_last = time_next
print('{:8.1f} Hz - {:8.1f} {:12} {:12} {:12}'
''.format(evtrate, psd_frequency, psd_amplitude,
det_avg, det_std))
#
# Need to makd sure right shape before outputting array
# aPxx.append(Pxx)
# psd_amp_array_pv.put(np.asarray(aPxx))
if calc_streak:
streak_fraction = streaks / psd_events
streak_fraction_pv.put(streak_fraction)
sums = []
# aPxx = []
# atime = []
streaks = 0
no_streak = []
# Change to evt.next() in future and count damage
detector.next()
except KeyboardInterrupt:
return
except Exception as e:
print(e)
def main(argv=None):
global simulate
global fp
global shut_open
global current
#parse command line options
usage = "usage: %prog [options]\nData files are written to /data/<year>/<month>/<day>/"
parser = OptionParser(usage)
parser.add_option("--detname",
action="store",
type="string",
dest="detname",
help="detector PV base")
parser.add_option("--xstart",
action="store",
type="float",
dest="xo",
help="starting X position")
parser.add_option("--xnumstep",
action="store",
type="int",
dest="Nx",
help="number of steps in X")
parser.add_option("--xstepsize",
action="store",
type="float",
dest="dx",
help="step size in X")
parser.add_option("--ystart",
action="store",
type="float",
dest="yo",
help="starting Y position")
parser.add_option("--ynumstep",
action="store",
type="int",
dest="Ny",
help="number of steps in Y")
parser.add_option("--ystepsize",
action="store",
type="float",
dest="dy",
help="step size in Y")
parser.add_option("--wait",
action="store",
type="float",
dest="stall",
help="wait at each step [seconds]")
parser.add_option("--simulate",
action="store_true",
dest="sim",
default=False,
help="simulate motor moves")
parser.add_option("--checkbeam",
action="store_true",
dest="checkbeam",
default=False,
help="only acquire when beam is on")
(options, args) = parser.parse_args()
#open log file
D0 = time.localtime()[0]
D1 = time.localtime()[1]
D2 = time.localtime()[2]
D3 = time.localtime()[3]
D4 = time.localtime()[4]
cd = os.getcwd()
filedir = '/nfs/xf05id1/data/'
if sys.argv[0][0] == '.':
out_filename=filedir+repr(D0)+'/'+repr(D1)+'/'+repr(D2)+'/'+'log_'+repr(D3)+'_'+repr(D4)+'_'+\
string.split(string.strip(sys.argv[0],'./'),'/')[0]+'.txt'
else:
out_filename=filedir+repr(D0)+'/'+repr(D1)+'/'+repr(D2)+'/'+'log_'+repr(D3)+'_'+repr(D4)+'_'+\
string.split(string.strip(sys.argv[0],'./'),'/')[5]+'.txt'
try:
os.chdir(filedir + repr(D0))
except OSError:
try:
os.mkdir(filedir + repr(D0))
except Exception:
print 'cannot create directory: ' + '/data/' + repr(D0)
sys.exit()
try:
os.chdir(filedir + repr(D0) + '/' + repr(D1))
except OSError:
try:
os.mkdir(filedir + repr(D0) + '/' + repr(D1))
except Exception:
print 'cannot create directory: ' + '/data/' + repr(
D0) + '/' + repr(D1)
sys.exit()
try:
os.chdir(filedir + repr(D0) + '/' + repr(D1) + '/' + repr(D2))
except OSError:
try:
os.mkdir(filedir + repr(D0) + '/' + repr(D1) + '/' + repr(D2))
except Exception:
print 'cannot create directory: ' + filedir + repr(
D0) + '/' + repr(D1) + '/' + repr(D2)
sys.exit()
try:
fp = open(out_filename, 'a')
except Exception:
print 'cannot open file: ' + out_filename
sys.exit()
os.chdir(cd)
fp.write('#' + ', '.join(sys.argv))
fp.write('\n')
#initialize PVs and callbacks
if options.detname == None:
# detstr='XF:03IDA-BI{FS:1-CAM:1}'
detstr = ''
print "must provide detector pv base, e.g., 'XF:28IDA-BI{URL:01}'"
sys.exit()
else:
detstr = options.detname
xmotname = 'XF:05IDD-ES:1{Stg:Smpl1-Ax:X}' #AerotechX
ymotname = 'XF:05IDD-ES:1{Stg:Smpl1-Ax:Y}' #AerotechY
xmot = PV(xmotname + 'Mtr.VAL')
xmot_cur = PV(xmotname + 'Mtr.RBV')
ymot = PV(ymotname + 'Mtr.VAL')
ymot_cur = PV(ymotname + 'Mtr.RBV')
shut_status = PV('SR:C05-EPS{PLC:1}Shutter:Sum-Sts')
beam_current = PV('SR:C03-BI{DCCT:1}I:Total-I')
#transmission
#check command line options
if options.yo == None:
print "must provide a starting point in the vertical"
sys.exit()
else:
yo = options.yo
if options.xo == None:
print "must provide a starting point in the horizontal"
sys.exit()
else:
xo = options.xo
if options.dx == None:
dx = 0.00000001
else:
dx = options.dx
if options.dy == None:
dy = 0.00000001
else:
dy = options.dy
if options.Nx == None:
Nx = 0
else:
Nx = options.Nx
if options.Ny == None:
Ny = 0
else:
Ny = options.Ny
if options.stall == None:
twait = 0.
else:
twait = options.stall
diode0 = PV(detstr + 'Cur:I0-I')
diode1 = PV(detstr + 'Cur:I1-I')
diode2 = PV(detstr + 'Cur:I2-I')
diode3 = PV(detstr + 'Cur:I3-I')
xmot_cur.get()
ymot_cur.get()
norm0 = PV('xf05bpm03:DataRead_Ch1')
norm1 = PV('xf05bpm03:DataRead_Ch2')
norm2 = PV('xf05bpm03:DataRead_Ch3')
norm3 = PV('xf05bpm03:DataRead_Ch4')
ssa0 = PV('XF:05IDA-BI{BPM:05}AH501:Current1:MeanValue_RBV')
ssa0.get()
ssa1 = PV('XF:05IDA-BI{BPM:05}AH501:Current2:MeanValue_RBV')
ssa1.get()
ssa2 = PV('XF:05IDA-BI{BPM:05}AH501:Current3:MeanValue_RBV')
ssa2.get()
ssa3 = PV('XF:05IDA-BI{BPM:05}AH501:Current4:MeanValue_RBV')
ssa3.get()
xmot_cur.add_callback(cbfx)
ymot_cur.add_callback(cbfy)
shut_status.add_callback(cbf_shut)
beam_current.add_callback(cbf_curr)
xmot_cur.run_callbacks()
ymot_cur.run_callbacks()
shut_status.run_callbacks()
beam_current.run_callbacks()
str = '#Start time is ' + time.asctime()
print str
fp.write(str)
fp.write('\n')
str = '#[point #]\tX pos\tY pos\tch 1\tch 2\tch 3\tch 4\tBPM1\tssa0\tssa1\tssa2\tssa3\ttime'
print str
fp.write(str)
fp.write('\n')
str='# x: %(hs)6.4f ; y: %(vs)6.4f '%\
{"hs":xmot_cur.get(),"vs":ymot_cur.get()}
print str
fp.write(str)
fp.write('\n')
if options.sim is True:
str = " -----simulating motor moves and bursts-----"
print str
fp.write(str)
fp.write('\n')
time.sleep(2)
#number of rows and columns completed by scan
Ncol = Nrow = 0
LN = 0
#diode readback is now limiting factor for scan speed
oldsig = 0.
#when the cryocooler kicks in, the beam is unusable for ~3200sec
cryo = PV('XF:05IDA-OP:1{Mono:HDCM}T:LN2Out-I')
ct = cryo.get()
while (ct is None):
time.sleep(0.05)
ct = cryo.get()
t0 = time.time()
cryocounter = 0
shut_toggle = False
#nested loops for scanning z,x,y
for y in np.linspace(yo, yo + ((Ny) * dy), Ny + 1):
tar[1][0] = y
tar[1][1] = 1
if options.sim is False:
ymot.put(tar[1][0])
if indeadband(float(tar[1][0]), float(ymot_cur.get()), dbd) == 1:
tar[1][1] = 0
if Nrow % 2 == 0:
xs = 0. + xo
xe = ((Nx + 1) * dx) + xo - dx
xi = dx
else:
xs = ((Nx) * dx) + xo
xe = 0. + xo
xi = -dx
for x in np.linspace(xs, xe, Nx + 1):
tar[0][0] = x
tar[0][1] = 1
if indeadband(float(tar[0][0]), float(xmot_cur.get()), dbd) == 1:
tar[0][1] = 0
if options.sim is False:
xmot.put(tar[0][0])
while ((tar[0][1] == 1) or (tar[1][1] == 1)):
time.sleep(0.01)
signal0 = signal1 = signal2 = signal3 = 0.
nsig0 = nsig1 = nsig2 = nsig3 = 0.
sigssa0 = sigssa1 = sigssa2 = sigssa3 = 0.
time.sleep(twait)
while (options.checkbeam and (cryo.get() < (ct))):
print "Stopped. Detected possible cryocooler activation."
time.sleep(1)
cryocounter = cryocounter + 1
#if the above is true for five cycles, the cryocooler was on, wait another 5min
if (options.checkbeam and cryocounter > 300):
print "Detected cryocooler activation, waiting 10min"
time.sleep(600)
cryocounter = 0
while (options.checkbeam
and (shut_open == False or beam_current == False)):
print "Stopped. Waiting for scan conditions to return to normal."
if shut_open == False:
shut_toggle = True
time.sleep(10.)
if shut_toggle == True:
print "Entering optics conditioning period. Waiting 5min"
time.sleep(300)
shut_toggle = False
if options.sim is False:
while signal0 == 0.:
signal0 = diode0.get()
while signal1 == 0.:
signal1 = float(diode1.get())
while (signal1 == oldsig):
time.sleep(0.05)
signal1 = diode1.get()
oldsig = signal1
while signal2 == 0.:
signal2 = diode2.get()
while signal3 == 0.:
signal3 = diode3.get()
while nsig0 == 0.:
nsig0 = float(norm0.get())
while nsig1 == 0.:
nsig1 = float(norm1.get())
while nsig2 == 0.:
nsig2 = float(norm2.get())
while nsig3 == 0.:
nsig3 = float(norm3.get())
sigssa0 = ssa0.get()
sigssa1 = ssa1.get()
sigssa2 = ssa2.get()
sigssa3 = ssa3.get()
tn = time.time() - t0
if options.sim is False:
str = '[%(X)06d] at ( %(XC)9.4f , %(YC)9.4f ): %(d1)10.7e %(d2)10.7e %(d3)10.7e %(d4)10.7e %(norm)10.7e %(s0)10.7e %(s1)10.7e %(s2)10.7e %(s3)10.7e %(time)9.2f' % {
'X': Ncol,
'XC': xmot_cur.get(),
"YC": ymot_cur.get(),
"d1": float(signal0),
"d2": float(signal1),
"d3": float(signal2),
"d4": float(signal3),
'norm': nsig0 + nsig1 + nsig2 + nsig3,
"s0": sigssa0,
"s1": sigssa1,
"s2": sigssa2,
"s3": sigssa3,
"time": tn
}
print str
fp.write(str)
fp.write('\n')
else:
str = '[%(X)06d] at ( %(XC)8.4f , %(YC)8.4f ): %(d1)10.7e %(d2)10.7e %(d3)10.7e %(d4)10.7e' % {
"X": int(Ncol),
"XC": tar[0][0],
"YC": tar[1][0],
"d1": float(signal0),
"d2": float(signal1),
"d3": float(signal2),
"d4": float(signal3)
}
print str
fp.write(str)
fp.write('\n')
Ncol = Ncol + 1
Nrow = Nrow + 1
str = 'End time is ' + time.asctime()
print str
fp.write(str)
fp.write('\n')
fp.close()
return 0
args = parser.parse_args()
#
pv_prefix = args.pv_prefix
try:
n_scans = int(args.n_scans)
except ValueError as e:
print(e)
print('--> Setting n_scans to 1')
n_scans = 1
# Global timestamps
NOW = datetime.datetime.now().strftime('%Y%m%d_%H%M')
TODAY = datetime.datetime.now().strftime('%Y%m%d')
## Get/Set some PVs
msgPv = PV(pv_prefix + ':MSG')
msgPv.put('Initializing run...')
print('Initializing run...')
DEBUG = PV(pv_prefix + ':WDEBUG:ENABLE').get()
script_pv = PV(pv_prefix + ':SCRIPT')
script = script_pv.get(as_string=True)
filepath_autoset = PV(pv_prefix + ':DATA:FILEPATH:AUTOSET').get()
filepath_pv = PV(pv_prefix + ':DATA:FILEPATH')
n_scans_pv = PV(pv_prefix + ':N_SCANS')
scan_count_pv = PV(pv_prefix + ':SCAN:COUNT')
scan_count_pv.put(0)
run_pv = PV(pv_prefix + ':RUNFLAG')
#exp_name = PV(pv_prefix + ':EXP:NAME').get(as_string=True)
#sample_name = PV(pv_prefix + ':SCAN:SAMPLE_NAME').get(as_string=True)
exp_name_pv = PV(pv_prefix + ':EXP:NAME')
sample_name_pv = PV(pv_prefix + ':SCAN:SAMPLE_NAME')
#!/usr/bin/env python
# For aborting scans.
# mdunning 1/7/16
from epics import PV
from time import sleep
import os,sys,signal
# PV prefix for pvScan IOC; should be passed as an argument to this script.
pvPrefix=sys.argv[1]
# Set an environment variable for so pvScan module can use it
os.environ['PVSCAN_PVPREFIX']=pvPrefix
# For printing status messages to PV
msgPv=PV(pvPrefix + ':MSG')
msgPv.put('Aborting...')
print 'Aborting...'
# Import pvScan module
sys.path.append('/afs/slac/g/testfac/extras/scripts/pvScan/prod/modules/')
import pvscan
# Get PID PV
pid=pvscan.pidPV.get()
#--- Scan PVs ------------------------------------------
# Create ScanPv objects, one for each PV you are scanning.
# First argument is the scan PV, leave as empty string to get from pvScan IOC.
# Second arg is an index which should be unique.
scanPv1=pvscan.ScanPv('',1)
scanPv2=pvscan.ScanPv('',2)
def enable_stopcount(self):
if not self.connected:
print "Device not connected"
return False
stop = 100
data1 = []
data2 = []
def getData1(pvname, value, **kw):
if value != 0:
data1.append(value)
def getData2(pvname, value, **kw):
if value != 0:
data2.append(value)
analog1 = PV('analogIn1')
stop_count = PV('outStopCount')
init = PV('initiate')
analog2 = PV('analogIn2')
poll(evt=1.e-5, iot=0.01)
analog1.wait_for_connection()
analog2.wait_for_connection()
init.wait_for_connection()
stop_count.wait_for_connection()
analog1.add_callback(getData1)
if util.put_check(stop_count, stop):
init.put(1)
t0 = time.time()
while time.time() - t0 < 30:
poll(evt=1.e-5, iot=0.01)
else:
print "Stopcount not set"
return False
buffered_run = len(data1)
analog2.add_callback(getData2)
time.sleep(2)
if util.put_check(stop_count, -1):
init.put(1)
t0 = time.time()
while time.time() - t0 < 30:
poll(evt=1.e-5, iot=0.01)
else:
print "Stopcount not set 2nd time"
return False
unbuffered_run = len(data2)
return buffered_run, unbuffered_run
# For doing DAQ scans. Logs PV data to a file while doing scan of an arbitrary PV. Uses a supporting IOC (pvScan).
# mdunning 1/7/16
from epics import PV
from time import sleep
import datetime,os,sys,math
from threading import Thread
# PV prefix for pvScan IOC; should be passed as an argument to this script.
pvPrefix=sys.argv[1]
# Set an environment variable for so pvscan module can use it
os.environ['PVSCAN_PVPREFIX']=pvPrefix
# For printing status messages to PV
msgPv=PV(pvPrefix + ':MSG')
msgPv.put('Initializing...')
print 'Initializing...'
# Import pvscan module
sys.path.append('/afs/slac/g/testfac/extras/scripts/pvScan/prod/modules/')
import pvscan
#--- Experiment ---------------------------------------
# Create Experiment object. Sets default filepath and gets experiment name from PV.
# First argument (optional) is an experiment name, leave blank to get from pvScan IOC.
# Second arg (optional) is a filepath, leave blank to get from pvScan IOC.
# Third arg (optional) is a scan name, leave blank to get from pvScan IOC.
exp1=pvscan.Experiment()
#--- Scan PVs ------------------------------------------
def stopcount_value(self):
if not self.connected:
print "Device not connected"
return False
#util.pv_check('status', 0)
#self.stop = 1001
data1 = []
data2 = []
def getData1(pvname, value, **kw):
if value != 0:
data1.append(value)
def getData2(pvname, value, **kw):
if value != 0:
data2.append(value)
analog1 = PV('analogIn1')
stop_count = PV('outStopCount')
init = PV('initiate')
analog2 = PV('analogIn2')
poll(evt=1.e-5, iot=0.01)
analog1.wait_for_connection()
analog2.wait_for_connection()
init.wait_for_connection()
stop_count.wait_for_connection()
util.put_check(stop_count, 100)
analog1.add_callback(getData1)
init.put(1)
poll(evt=1.e-5, iot=0.01)
t0 = time.time()
while time.time() - t0 < 10:
poll(evt=1.e-5, iot=0.01)
first_run = len(data1)
analog1.remove_callback(0)
analog1.add_callback(getData2)
time.sleep(2)
util.put_check(stop_count, 200)
init.put(1)
poll(evt=1.e-5, iot=0.01)
t0 = time.time()
while time.time() - t0 < 10:
poll(evt=1.e-5, iot=0.01)
second_run = len(data2)
return first_run, second_run
def test_db(softioc, caclient):
pv_in1 = PV("ET_dummyHost:LI1")
pv_in2 = PV("ET_dummyHost:LI2")
pv_calc = PV("ET_dummyHost:CALC")
pv_in1.wait_for_connection(timeout=30)
pv_in2.wait_for_connection(timeout=30)
pv_calc.wait_for_connection(timeout=30)
pv_in1.put(1, timeout=1)
pv_in2.put(2, timeout=1)
time.sleep(0.1)
pv_calc.get()
assert pv_calc.value == 3
class QtEpicsMotorWidget(QtWidgets.QWidget):
"""
This module provides a class library for a GUI label field widget bound to an Epics PV. The PV is monitored
and the field is updated when the PV changes
"""
changeColor = QtCore.Signal(str)
def __init__(self, pvname, parent, input_width, precision = 2, editable=False):
"""
Inputs:
pvname:
The name of the epics process variable.
parent:
The container to place the entry widget.
input_width:
precision:
highlight_on_change:
Example:
detstat_file = epicsPVLabel("x12c_comm:datafilename",filestat_frame,70)
detstat_file.getEntry().pack(side=LEFT,fill=X,expand=YES)
"""
super(QtEpicsMotorWidget, self).__init__()
self.precision = precision
self.editable = editable
#self.applyOnEnter = applyOnEnter
self.entry_var = ""
# Creates the PV
self.entry_pv = PV(pvname+".RBV", connection_callback=self._conCB)
self.base_pv = PV(pvname)
if(self.editable):
self.entry = QtWidgets.QLineEdit(parent)
else:
self.entry = QtWidgets.QLabel(parent)
if (input_width != 0):
self.entry.setFixedWidth(input_width)
time.sleep(0.05)
try: #because the connection CB handles the timeout for PVs that don't exist
self._set_entry_var_with_precision(self.entry_pv.get())
self.entry.setText(self.entry_var)
except:
self.entry_var = "-----"
self.entry.setText(self.entry_var)
self.changeColor.emit("white")
return
self.changeColor.connect(self.setColor)
self.entry_pv.add_callback(self._entry_pv_movingCb)
self.entry_dmov_pv = PV(pvname+".DMOV")
self.entry_dmov_pv.add_callback(self._entry_pv_dmovCb)
def _conCB(self,conn,**kwargs):
# print "in Con callback %d" % epics_args[1]
if (conn):
self.changeColor.emit("blue")
# self.entry.configure(background="#729fff")
else:
self.entry_var = "-----"
self.entry.setText(self.entry_var)
self.changeColor.emit("white")
def _entry_pv_movingCb(self,value,**kwargs):
# print "in callback " + str(epics_args['pv_value']) + " " + ca.dbf_text(epics_args['type'])
self._set_entry_var_with_precision(value)
self.entry.setText(self.entry_var)
# self.emit(QtCore.SIGNAL("changeColor"),"green")
def _entry_pv_dmovCb(self,value,**kwargs):
# print "in callback " + str(epics_args['pv_value'])
if (value == 1):
self.changeColor.emit("None")
else:
# self.emit(QtCore.SIGNAL("changeColor"),"#99FF66")
self.changeColor.emit("yellow")
def _set_entry_var_with_precision(self,inval):
try:
val = float(inval)
if (self.precision == 0):
self.entry_var = "%.0f" % val
elif (self.precision == 1):
self.entry_var = "%.1f" % val
elif (self.precision == 2):
self.entry_var = "%.2f" % val
elif (self.precision == 3):
self.entry_var ="%.3f" % val
elif (self.precision == 4):
self.entry_var = "%.4f" % val
else:
self.entry_var ="%.5f" % val
except TypeError:
#TODO: check this waveform_to_string function
self.entry_var = "Type Error" # waveform_to_string(inval)
pass
except ValueError:
#TODO: check this waveform_to_string function
self.entry_var = "Value Error" # waveform_to_string(inval)
pass
# def pack(self,side=LEFT,padx=0,pady=0): #pass the params in
# self.entry.pack(side=side,padx=padx,pady=pady)
def getEntry(self):
return self.entry
def getBasePV(self):
return self.base_pv
def getField(self):
return self.entry_var
def setField(self,value):
self.entry_var = value
def setColor(self,color_s="pink"):
self.entry.setStyleSheet("background-color: %s;" % color_s)
def main(argv=None):
global dbd
global simulate
global fp
global shut_open
global current
global T_stop
dSi111 = SRXenergy.d111
dbragg = SRXenergy.dBragg
#parse command line options
usage = "usage: %prog [options]\nData files are written to /data/<year>/<month>/<day>/"
parser = OptionParser(usage)
parser.add_option("--wait",
action="store",
type="float",
dest="stall",
help="wait at each step [seconds]")
parser.add_option("--config",
action="store",
type="string",
dest="fname",
help="name of config file")
parser.add_option("--simulate",
action="store_true",
dest="sim",
default=False,
help="simulate motor moves and bursting")
parser.add_option("--checkbeam",
action="store_true",
dest="checkbeam",
default=False,
help="only acquire when beam is on")
parser.add_option("--acqtime",
action="store",
type="float",
dest="acqt",
help="image integration time [sec]")
parser.add_option("--acqnum",
action="store",
type="int",
dest="acqn",
help="images to collect")
(options, args) = parser.parse_args()
#open log file
D0 = time.localtime()[0]
D1 = time.localtime()[1]
D2 = time.localtime()[2]
D3 = time.localtime()[3]
D4 = time.localtime()[4]
cd = os.getcwd()
fstr = '/nfs/xf05id1/data/'
if sys.argv[0][0] == '.':
out_filename=fstr+repr(D0)+'/'+repr(D1)+'/'+repr(D2)+'/'+'log_'+repr(D0)+'_'+repr(D1)+'_'+repr(D2)+'_'+repr(D3)+'_'+repr(D4)+'_'+\
string.split(string.strip(sys.argv[0],'./'),'/')[0]+'.txt'
else:
out_filename=fstr+repr(D0)+'/'+repr(D1)+'/'+repr(D2)+'/'+'log_'+repr(D0)+'_'+repr(D1)+'_'+repr(D2)+'_'+repr(D3)+'_'+repr(D4)+'_'+\
string.split(string.strip(sys.argv[0],'./'),'/')[5]+'.txt'
try:
os.chdir(fstr + repr(D0))
except OSError:
try:
os.mkdir(fstr + repr(D0))
except Exception:
print 'cannot create directory: ' + fstr + repr(D0)
sys.exit()
try:
os.chdir(fstr + repr(D0) + '/' + repr(D1))
except OSError:
try:
os.mkdir(fstr + repr(D0) + '/' + repr(D1))
except Exception:
print 'cannot create directory: ' + fstr + repr(D0) + '/' + repr(
D1)
sys.exit()
try:
os.chdir(fstr + repr(D0) + '/' + repr(D1) + '/' + repr(D2))
except OSError:
try:
os.mkdir(fstr + repr(D0) + '/' + repr(D1) + '/' + repr(D2))
except Exception:
print 'cannot create directory: ' + fstr + repr(D0) + '/' + repr(
D1) + '/' + repr(D2)
sys.exit()
try:
fp = open(out_filename, 'a')
except Exception:
print 'cannot open file: ' + out_filename
sys.exit()
try:
os.chdir(fstr + repr(D0) + '/' + repr(D1) + '/' + repr(D2) + '/' +
'HDF5')
except OSError:
try:
os.mkdir(fstr + repr(D0) + '/' + repr(D1) + '/' + repr(D2) + '/' +
'HDF5')
except Exception:
print 'cannot create directory: ' + fstr + repr(D0) + '/' + repr(
D1) + '/' + repr(D2) + '/' + 'HDF5'
sys.exit()
# H5path=fstr+repr(D0)+'/'+repr(D1)+'/'+repr(D2)+'/HDF5'
H5path = '/epics/data/2015-3/300226-2'
# H5path='/epics/data/2015-3/in-house'
os.chdir(cd)
fp.write('#')
fp.write(', '.join(sys.argv))
fp.write('\n')
#open list of scan points
try:
fconfig = open(options.fname)
except Exception:
print "cannot open file containing scan points. Error opening: " + options.fname
sys.exit()
fstr = '#a default string'
pN = 0
angle = list()
ivu = list()
t2gap = list()
while fstr.rsplit().__len__() > 0:
if (fstr[0] is not '#'):
pN = pN + 1
angle.append(fstr.rsplit()[0])
ivu.append(fstr.rsplit()[1])
t2gap.append(fstr.rsplit()[2])
fstr = fconfig.readline()
fconfig.close()
#initialize PVs and callbacks
detstr = 'XF:05IDA{IM:1}'
bmot = PV('XF:05IDA-OP:1{Mono:HDCM-Ax:P}Mtr.VAL', connection_timeout=4)
bmot_cur = PV('XF:05IDA-OP:1{Mono:HDCM-Ax:P}Mtr.RBV', connection_timeout=4)
bmot_stop = PV('XF:05IDA-OP:1{Mono:HDCM-Ax:P}Mtr.STOP',
connection_timeout=4)
umot = PV('SR:C5-ID:G1{IVU21:1-Mtr:2}Inp:Pos', connection_timeout=4)
umot_cur = PV('SR:C5-ID:G1{IVU21:1-LEnc}Gap', connection_timeout=4)
umot_go = PV('SR:C5-ID:G1{IVU21:1-Mtr:2}Sw:Go', connection_timeout=4)
gmot = PV('XF:05IDA-OP:1{Mono:HDCM-Ax:X2}Mtr.VAL', connection_timeout=4)
gmot_cur = PV('XF:05IDA-OP:1{Mono:HDCM-Ax:X2}Mtr.RBV',
connection_timeout=4)
gmot_stop = PV('XF:05IDA-OP:1{Mono:HDCM-Ax:X2}Mtr.STOP',
connection_timeout=4)
shut_status = PV('SR:C05-EPS{PLC:1}Shutter:Sum-Sts', connection_timeout=4)
beam_current = PV('SR:C03-BI{DCCT:1}I:Total-I', connection_timeout=4)
bragg_temp = PV('XF:05IDA-OP:1{Mono:HDCM-Ax:P}T-I', connection_timeout=4)
norm0 = PV('XF:05IDD-BI:1{BPM:01}.S20', connection_timeout=4)
norm1 = PV('XF:05IDD-BI:1{BPM:01}.S21', connection_timeout=4)
norm2 = PV('XF:05IDD-BI:1{BPM:01}.S22', connection_timeout=4)
norm3 = PV('XF:05IDD-BI:1{BPM:01}.S23', connection_timeout=4)
wb = srxslit.nsls2slit(tb='XF:05IDA-OP:1{Slt:1-Ax:T}',
bb='XF:05IDA-OP:1{Slt:1-Ax:B}',
ib='XF:05IDA-OP:1{Slt:1-Ax:I}',
ob='XF:05IDA-OP:1{Slt:1-Ax:O}')
pb = srxslit.nsls2slit(ib='XF:05IDA-OP:1{Slt:2-Ax:I}',
ob='XF:05IDA-OP:1{Slt:2-Ax:O}')
ssa = srxslit.nsls2slit(tb='XF:05IDB-OP:1{Slt:SSA-Ax:T}',
bb='XF:05IDB-OP:1{Slt:SSA-Ax:B}',
ob='XF:05IDB-OP:1{Slt:SSA-Ax:O}',
ib='XF:05IDB-OP:1{Slt:SSA-Ax:I}')
x3acq = PV('XSPRESS3-EXAMPLE:Acquire', connection_timeout=4)
x3erase = PV('XSPRESS3-EXAMPLE:ERASE', connection_timeout=4)
x3acqtime = PV('XSPRESS3-EXAMPLE:AcquireTime', connection_timeout=4)
x3acqnum = PV('XSPRESS3-EXAMPLE:NumImages', connection_timeout=4)
x3tmode = PV('XSPRESS3-EXAMPLE:TriggerMode', connection_timeout=4)
x3h5path = PV('XSPRESS3-EXAMPLE:HDF5:FilePath', connection_timeout=4)
x3h5fname = PV('XSPRESS3-EXAMPLE:HDF5:FileName', connection_timeout=4)
x3h5fnum = PV('XSPRESS3-EXAMPLE:HDF5:FileNumber', connection_timeout=4)
x3h5vdim = PV('XSPRESS3-EXAMPLE:HDF5:NumExtraDims', connection_timeout=4)
x3h5size = PV('XSPRESS3-EXAMPLE:HDF5:ExtraDimSizeN', connection_timeout=4)
x3h5d1 = PV('XSPRESS3-EXAMPLE:HDF5:ExtraDimSizeX', connection_timeout=4)
x3h5d2 = PV('XSPRESS3-EXAMPLE:HDF5:ExtraDimSizeY', connection_timeout=4)
x3h5writerbv = PV('XSPRESS3-EXAMPLE:HDF5:WriteFile_RBV',
connection_timeout=2)
#report ROIs for channels and counts at each point
x3ch1roi0min = PV('XSPRESS3-EXAMPLE:C1_MCA_ROI1_LLM', connection_timeout=4)
x3ch1roi0max = PV('XSPRESS3-EXAMPLE:C1_MCA_ROI1_HLM', connection_timeout=4)
x3ch1roi0ct = PV('XSPRESS3-EXAMPLE:C1_ROI1:Value_RBV',
connection_timeout=4)
x3ch1roi1min = PV('XSPRESS3-EXAMPLE:C1_MCA_ROI2_LLM', connection_timeout=4)
x3ch1roi1max = PV('XSPRESS3-EXAMPLE:C1_MCA_ROI2_HLM', connection_timeout=4)
x3ch1roi1ct = PV('XSPRESS3-EXAMPLE:C1_ROI2:Value_RBV',
connection_timeout=4)
x3ch1roi2min = PV('XSPRESS3-EXAMPLE:C1_MCA_ROI3_LLM', connection_timeout=4)
x3ch1roi2max = PV('XSPRESS3-EXAMPLE:C1_MCA_ROI3_HLM', connection_timeout=4)
x3ch1roi2ct = PV('XSPRESS3-EXAMPLE:C1_ROI3:Value_RBV',
connection_timeout=4)
x3ch2roi0min = PV('XSPRESS3-EXAMPLE:C2_MCA_ROI1_LLM', connection_timeout=4)
x3ch2roi0max = PV('XSPRESS3-EXAMPLE:C2_MCA_ROI1_HLM', connection_timeout=4)
x3ch2roi0ct = PV('XSPRESS3-EXAMPLE:C2_ROI1:Value_RBV',
connection_timeout=4)
x3ch2roi1min = PV('XSPRESS3-EXAMPLE:C2_MCA_ROI2_LLM', connection_timeout=4)
x3ch2roi1max = PV('XSPRESS3-EXAMPLE:C2_MCA_ROI2_HLM', connection_timeout=4)
x3ch2roi1ct = PV('XSPRESS3-EXAMPLE:C2_ROI2:Value_RBV',
connection_timeout=4)
x3ch2roi2min = PV('XSPRESS3-EXAMPLE:C2_MCA_ROI3_LLM', connection_timeout=4)
x3ch2roi2max = PV('XSPRESS3-EXAMPLE:C2_MCA_ROI3_HLM', connection_timeout=4)
x3ch2roi2ct = PV('XSPRESS3-EXAMPLE:C2_ROI3:Value_RBV',
connection_timeout=4)
x3ch3roi0min = PV('XSPRESS3-EXAMPLE:C3_MCA_ROI1_LLM', connection_timeout=4)
x3ch3roi0max = PV('XSPRESS3-EXAMPLE:C3_MCA_ROI1_HLM', connection_timeout=4)
x3ch3roi0ct = PV('XSPRESS3-EXAMPLE:C3_ROI1:Value_RBV',
connection_timeout=4)
x3ch3roi1min = PV('XSPRESS3-EXAMPLE:C3_MCA_ROI2_LLM', connection_timeout=4)
x3ch3roi1max = PV('XSPRESS3-EXAMPLE:C3_MCA_ROI2_HLM', connection_timeout=4)
x3ch3roi1ct = PV('XSPRESS3-EXAMPLE:C3_ROI2:Value_RBV',
connection_timeout=4)
x3ch3roi2min = PV('XSPRESS3-EXAMPLE:C3_MCA_ROI3_LLM', connection_timeout=4)
x3ch3roi2max = PV('XSPRESS3-EXAMPLE:C3_MCA_ROI3_HLM', connection_timeout=4)
x3ch3roi2ct = PV('XSPRESS3-EXAMPLE:C3_ROI3:Value_RBV',
connection_timeout=4)
#claim ROI 4 for our own use. we will integrate over all 4096 channels.
x3ch1roi3min = PV('XSPRESS3-EXAMPLE:C1_MCA_ROI4_LLM', connection_timeout=4)
x3ch1roi3max = PV('XSPRESS3-EXAMPLE:C1_MCA_ROI4_HLM', connection_timeout=4)
x3ch1roi3ct = PV('XSPRESS3-EXAMPLE:C1_ROI4:Value_RBV',
connection_timeout=4)
x3ch2roi3min = PV('XSPRESS3-EXAMPLE:C2_MCA_ROI4_LLM', connection_timeout=4)
x3ch2roi3max = PV('XSPRESS3-EXAMPLE:C2_MCA_ROI4_HLM', connection_timeout=4)
x3ch2roi3ct = PV('XSPRESS3-EXAMPLE:C2_ROI4:Value_RBV',
connection_timeout=4)
x3ch3roi3min = PV('XSPRESS3-EXAMPLE:C3_MCA_ROI4_LLM', connection_timeout=4)
x3ch3roi3max = PV('XSPRESS3-EXAMPLE:C3_MCA_ROI4_HLM', connection_timeout=4)
x3ch3roi3ct = PV('XSPRESS3-EXAMPLE:C3_ROI4:Value_RBV',
connection_timeout=4)
dett = PV('XF:05IDD-ES:1{EVR:1-Out:FP3}Src:Scale-SP', connection_timeout=4)
deti = PV('XF:05IDA{IM:1}Per-SP', connection_timeout=4)
detinit = PV('XF:05IDA{IM:1}Cmd:Init', connection_timeout=4)
det0 = PV(detstr + 'Cur:I0-I', connection_timeout=4)
det1 = PV(detstr + 'Cur:I1-I', connection_timeout=4)
det2 = PV(detstr + 'Cur:I2-I', connection_timeout=4)
det3 = PV(detstr + 'Cur:I3-I', connection_timeout=4)
bmot.info
bmot_cur.info
bmot_stop.info
umot.info
umot_cur.info
umot_go.info
gmot.info
gmot_cur.info
gmot_stop.info
det0.info
det1.info
det2.info
det3.info
bragg_temp.info
bmot_cur.add_callback(cbfx)
bmot_cur.run_callbacks()
umot_cur.add_callback(cbfy)
umot_cur.run_callbacks()
gmot_cur.add_callback(cbfz)
gmot_cur.run_callbacks()
shut_status.add_callback(cbf_shut)
beam_current.add_callback(cbf_curr)
shut_status.run_callbacks()
beam_current.run_callbacks()
bragg_temp.add_callback(cbf_temp)
bragg_temp.run_callbacks()
x3h5path.put(H5path)
x3h5fname.put(
repr(D0) + '_' + repr(D1) + '_' + repr(D2) + '_' + repr(D3) + '_' +
repr(D4) + '_')
x3h5fnum.put(0)
x3acqtime.put(options.acqt)
x3acqnum.put(options.acqn)
x3tmode.put(1)
x3ch1roi3min.put(0)
x3ch2roi3min.put(0)
x3ch3roi3min.put(0)
x3ch1roi3max.put(4096)
x3ch2roi3max.put(4096)
x3ch3roi3max.put(4096)
#h5 set up
x3h5vdim.put(1)
x3h5size.put(options.acqn)
x3h5d1.put(pN)
x3h5d2.put(0)
roits = x3ch3roi3ct.timestamp
dett.put(3)
#overhead on triggering F460
deti.put(float(options.acqn) * options.acqt * .9)
detinit.put(1)
#check command line options
if options.stall == None:
twait = 0.
else:
twait = options.stall
str = '#NSLS-II SRX' + time.asctime()
fp.write(str)
fp.write('\n')
str = '# Start time is ' + time.asctime()
print str
fp.write(str)
fp.write('\n')
if options.sim is True:
str = " -----simulating motor moves and bursts-----"
print str
fp.write(str)
fp.write('\n')
else:
x3h5capture.put(1)
dett.put(4)
while x3h5capture.get() == 0:
time.sleep(0.5)
time.sleep(2)
while x3h5writerbv.get() == 0:
x3h5capture.put(0)
print "File write is not confirmed. Waiting for confirmation..."
time.sleep(30)
x3h5capture.put(1)
time.sleep(2)
dett.put(3)
str='# bragg: %(br)6.4f ; undulator: %(un)6.4f ; gap: %(cg)f ; ROI1 %(roi1i)d:%(roi1a)d ; ROI2 %(roi2i)d:%(roi2a)d ; ROI3 %(roi3i)d:%(roi3a)d'%\
{"br":bmot_cur.get(),"un":umot_cur.get(), "cg":gmot_cur.get(),'roi1i':x3ch1roi0min.get(), 'roi1a':x3ch1roi0max.get(), 'roi2i':x3ch1roi1min.get(), 'roi2a':x3ch1roi1max.get(), 'roi3i':x3ch1roi2min.get(), 'roi3a':x3ch1roi2max.get()}
print str
fp.write(str)
fp.write('\n')
str = "# --------------------"
print str
fp.write(str)
fp.write('\n')
str = "# bragg u-gap c-gap energy I0-1 I0-2 I0-3 I0-4 time ROI-1 ROI-2 ROI-3 ROI-4 intensity"
print str
fp.write(str)
fp.write('\n')
LN = 0
oldsig = det0.get()
t0 = time.time()
sig0 = 0.
sig1 = 0.
sig2 = 0.
sig3 = 0.
nsig0 = 0.
nsig1 = 0.
nsig2 = 0.
nsig3 = 0.
for x in range(0, pN):
tar[0][1] = 1
tar[0][0] = float(angle[x])
tar[1][1] = 1
tar[1][0] = float(ivu[x])
tar[2][1] = 1
tar[2][0] = float(t2gap[x])
#if tar[0][0] is the original position, raise "in position" flag
if indeadband(float(tar[0][0]), float(bmot_cur.get()), dbd) == 1:
tar[0][1] = 0
if indeadband(float(tar[1][0]), float(umot_cur.get()), dbd) == 1:
tar[1][1] = 0
if indeadband(float(tar[2][0]), float(gmot_cur.get()), dbd) == 1:
tar[2][1] = 0
if options.sim is False:
bmot.put(tar[0][0])
umot.put(tar[1][0])
gmot.put(tar[2][0])
time.sleep(1)
umot_go.put(0)
else:
tar[0][1] = 0
tar[1][1] = 0
tar[2][1] = 0
while (tar[0][1] == 1) or (tar[1][1] == 1) or (tar[2][1] == 1):
time.sleep(0.05)
if LN > 400:
umot_go.put(0)
LN = 0
else:
LN = LN + 1
if options.sim is False:
time.sleep(twait)
while (options.checkbeam and
(shut_open == False
or beam_current == False)) or T_stop == True:
print "Stopped. Waiting for scan conditions to return to normal."
if shut_open == False:
print "\t->shutter is closed"
elif beam_current == False:
print "\t->Ring current is below threshold"
elif T_stop == True:
print "\t->HDCM pitch motor is too hot"
else:
print "\t->why not have a nice cup of tea or hit ctrl-C?"
time.sleep(60.)
x3erase.put(1)
dett.put(4)
nsig0 = norm0.get()
nsig1 = norm1.get()
nsig2 = norm2.get()
nsig3 = norm3.get()
#??
# sig0=sig1=sig2=sig3=3
sig0 = sig1 = sig2 = sig3 = 0
for i in range(0, options.acqn):
x3acq.put(1)
while (x3ch3roi3ct.get() == 0.0
or x3ch3roi3ct.timestamp == roits):
time.sleep(0.02)
sig0 = sig0 + x3ch1roi0ct.get() + x3ch2roi0ct.get(
) + x3ch3roi0ct.get()
sig1 = sig1 + x3ch1roi1ct.get() + x3ch2roi1ct.get(
) + x3ch3roi1ct.get()
sig2 = sig2 + x3ch1roi2ct.get() + x3ch2roi2ct.get(
) + x3ch3roi2ct.get()
sig3 = sig3 + x3ch1roi3ct.get() + x3ch2roi3ct.get(
) + x3ch3roi3ct.get()
# sig0=sig0+x3ch2roi0ct.get()+x3ch3roi0ct.get()
# sig1=sig1+x3ch2roi1ct.get()+x3ch3roi1ct.get()
# sig2=sig2+x3ch2roi2ct.get()+x3ch3roi2ct.get()
# sig3=sig3+x3ch2roi3ct.get()+x3ch3roi3ct.get()
roits = x3ch3roi3ct.timestamp
signal0 = float(det1.get())
while (signal0 == 0.0):
signal0 = float(det1.get())
# while(signal0 == oldsig):
# signal0=det0.get()
# oldsig=signal0
dett.put(3)
else:
while (options.checkbeam
and (shut_open == False or beam_current == False)):
print "Stopped. Waiting for beam to return."
time.sleep(60.)
signal0 = 0.
nsig1 = 0
nsig2 = 0
nsig3 = 0
tn = time.time() - t0
if options.sim is False:
# str=' %(B)8.4f %(U)8.4f %(G)8.3f %(E)8.2f %(C0)10.7e %(C1)10.7e %(C2)10.7e %(C3)10.7e %(T)d %(ROI1)d %(ROI2)d %(ROI3)d %(ROI4)d %(T1)10.7e'%{"B":float(bmot_cur.get()), "U":float(umot_cur.get()), "G":float(gmot_cur.get()), "C0":nsig0, "C1":nsig1, "C2":nsig2, "C3":nsig3, "ROI1":sig0,'T':tn,"ROI2":sig1,"ROI3":sig2,"ROI4":sig3,"T1":signal0,"E":12398.4 / (2 * 3.13029665951 * math.sin((bmot_cur.get()+0.323658778534)/180.*np.pi))}
str = ' %(B)8.4f %(U)8.4f %(G)8.3f %(E)8.2f %(C0)10.7e %(C1)10.7e %(C2)10.7e %(C3)10.7e %(T)d %(ROI1)d %(ROI2)d %(ROI3)d %(ROI4)d %(T1)10.7e' % {
"B":
float(bmot_cur.get()),
"U":
float(umot_cur.get()),
"G":
float(gmot_cur.get()),
"C0":
nsig0,
"C1":
nsig1,
"C2":
nsig2,
"C3":
nsig3,
"ROI1":
sig0,
'T':
tn,
"ROI2":
sig1,
"ROI3":
sig2,
"ROI4":
sig3,
"T1":
signal0,
"E":
12398.4 / (2 * dSi111 * math.sin(
(bmot_cur.get() + dbragg) / 180. * np.pi))
}
print str
fp.write(str)
fp.write('\n')
else:
str = ' B= %(B)8.4f U= %(U)8.4f G= %(G)8.3f : %(C0)10.7e %(C1)10.7e %(C2)10.7e %(C3)10.7e %(ROI)d %(T)d' % {
"B": tar[0][0],
"U": tar[1][0],
"G": tar[2][0],
"C0": signal0,
"C1": nsig1,
"C2": nsig2,
"C3": nsig3,
"ROI": x3ch1roi0ct.get(),
'T': time.time()
}
print str
fp.write(str)
fp.write('\n')
str = '#End time is ' + time.asctime()
print str
fp.write(str)
fp.write('\n')
fp.close()
bmot_cur.clear_callbacks()
umot_cur.clear_callbacks()
gmot_cur.clear_callbacks()
shut_status.clear_callbacks()
beam_current.clear_callbacks()
bragg_temp.clear_callbacks()
return 0
import subprocess
import argparse
parser = argparse.ArgumentParser(description='Accumulate run information.')
#parser.add_argument('-k', '--kine',
# default = 'DBASE/COIN/auto_standard.kinematics',
# help = 'output put for automatic standard.kinematics',
# dest='kinematics')
parser.add_argument('-i','--input',
default = 'db2/run_list.json',
help='input json run database',
dest='input_file')
args = parser.parse_args()
kine_setting_num_pv = PV('hcKinematicSettingNumber')
kine_setting_group_pv = PV('hcKinematicSettingGroup')
kine_setting_id_pv = PV('hcKinematicSettingID')
run_in_progress_pv = PV('hcCOINRunInProgress')
def update_epics_kinematics(pvname=None, value=None, host=None, **kws):
p = subprocess.Popen(['bash','/group/c-csv/cdaq/csv_run_plan/bin/get_current_setting.sh'], stdout=subprocess.PIPE, stderr=subprocess.PIPE)
out, err = p.communicate()
#print out
values = out.split()
epics.caput('hcKinematicSettingGroup', int(values[0]))
epics.caput('hcKinematicSettingNumber',int(values[1]))
epics.caput('hcKinematicSettingID', int(values[2]))
print values[0]
print values[1]
print values[2]
# Necessary modules
from epics import PV
import Adafruit_BBIO.GPIO as GPIO
import sys
import time
# Configuration of the BeagleBone Black pin used to open or close the relay contact
GPIO.setup("P9_14", GPIO.OUT)
GPIO.output("P9_14", GPIO.HIGH)
# These are the EPICS PVs that should be observed by this program
PV1 = PV("RAD:Berthold:Int")
PV2 = PV("RAD:ELSE:DoseIntegral")
PV3 = PV("RAD:THERMO:DoseIntegral")
# The radiation dose limit (in uSv) is an argument of the program
dose_limit = float(sys.argv[1])
# Loop
while (True):
try:
# If any of the three radiation measurements exceeded the limit, the program opens the
# relay contact. If this is not the case, the relay contact is kept closed.
def __init__(self,
mnemonic,
pv=None,
responseTimeout=15,
output="./out",
numPoints=1044,
mcas=False):
"""Constructor
responseTimeout : how much time to wait qe65000 answer
numPoints : how many points are collected each time
"""
super().__init__(mnemonic, numPoints, output, 'ocean')
self.acquireChanged = Event()
self.acquiring = False
try:
# determines the start of counting
self.pvStart = PV(pv + ":Acquire")
# determines mode of Acquisition (Single,Continous, Dark Spectrum)
self.pvAcquireMode = PV(pv + ":AcquisitionMode")
# use darkcorrection
self.pvDarkCorrection = PV(pv + ":ElectricalDark")
# spectrum
self.pvSpectrum = PV(pv + ":Spectra")
self.pvSpectrumCorrected = PV(pv + ":DarkCorrectedSpectra")
# set Acquire Time
self.pvAcquireTime = PV(pv + ":SetIntegration")
# integration Time
self.pvTime = PV(pv + ":IntegrationTime:Value")
# control the end of acquire process
self.pvAcquire = PV(pv + ":Acquiring")
self.pvAcquire.add_callback(self.statusChange)
# acquisition mode
self.pvAcMode = PV(pv + ":AcquisitionMode")
# set to single mode
self.pvAcMode.put("Single")
# axis Spectra
pvAxis = PV(pv + ":SpectraAxis")
self.axis = pvAxis.get(as_numpy=True)[:self.numPoints]
# regions of interest
self.ROIS = []
self.mcas = mcas
self.responseTimeout = responseTimeout
self.timer = Timer(self.responseTimeout)
except TypeError:
raise RuntimeError('PV not found')
except ValueError:
raise RuntimeError('Device is offline')
class PylonCCDTriggered(PylonCCD):
"""
Python class to help configuration and control of Charge-Coupled Devices
(CCD) via Hyppie over EPICS and external trigger mechanism.
CCD is the most common mechanism for converting optical images to electrical
signals. In fact, the term CCD is know by many people because of their use
of video cameras and digital still cameras.
"""
# PyLoN CCD callback function for acquire status
def onAcquireChange(self, value, **kw):
# If 'Output Signal' of Trigger in LF is 'Waiting For Trigger',
# then value when done (waiting) is 1 (one);
# Otherwise, if output signal is 'Reading Out', then value when
# done (read) is 0 (zero).
self._done = (value == 0)
# PyLoN CCD constructor
# readoutMode = 0 (FullFrame)
# readoutMode = 1 (Kinetics)
def __init__(self,
pvName,
pvNameIN,
pvNameOUT,
mnemonic,
accumulations=1,
readoutMode=0):
# IN DXAS:DIO:bi8 # 1.0 (read TTL OUT from CCD)
# OUT DXAS:DIO:bo17 # 6.1 (write Trigger IN to CCD start acquisition)
self.pvTriggerAcquire = PV(pvNameOUT)
self.pvMonitor = PV(pvNameIN, callback=self.onAcquireChange)
# Number of accumulations per frame
self.accumulations = accumulations
# Then call parent initializer
# Operation Mode of readout control
self.readoutMode = readoutMode
PylonCCD.__init__(self, pvName, mnemonic)
# Configurable timeout to control triggers
self.triggerTimeout = None
def isDone(self):
# If 'Output Signal' of Trigger in LF is 'Waiting For Trigger',
# then value when done (waiting) is 1 (one);
# Otherwise, if output signal is 'Reading Out', then value when
# done (read) is 0 (zero).
return (self.pvMonitor.get() == 0)
def acquire(self, waitComplete=False):
# Necessary wait if a pause command was sent to the system
# This is being used by furnace experiments (temperature scan)
while (self.isPaused()):
sleep(0.2)
#print(self.readoutMode)
if (self.readoutMode == 0):
# FullFrame
repeatTimes = self.accumulations
elif (self.readoutMode == 1):
# Kinetics
repeatTimes = 1
for currentAccumulation in range(repeatTimes):
# Set the attribute of done acquisition to False
self._done = False
####################################################################
# The digital output port which trigger the CCD should be pulsed.
# Minor pulse width in tests were 10 ms.
####################################################################
self.pvTriggerAcquire.put(1)
sleep(0.01) # Just to guarantee a 10ms trigger...
self.pvTriggerAcquire.put(0)
if ((waitComplete)):
self.wait()
def startLightFieldAcquisition(self):
self.pvAcquire.put(1)
def waitFinishAcquiring(self):
accumulation_wait = 0
while (not self._done
and accumulation_wait < self.getTriggerTimeout()):
accumulation_wait += WAIT_ACQUIRING
sleep(WAIT_ACQUIRING)
def wait(self):
"""
Wait for a complete PyLoN CCD acquiring process to finish.
Returns
-------
out : `bool`
"""
self.waitFinishAcquiring()
def startCount(self):
"""
Trigger the acquisition process of PyLoN CCD.
"""
self.acquire(True)
def isCounting(self):
"""
Abstract method to check if the device is counting or not.
Returns
-------
out : `bool`
"""
return (not self.isDone())
def setTriggerTimeout(self, timeout):
self.triggerTimeout = timeout
def getTriggerTimeout(self):
if (self.triggerTimeout is None):
return TIMEOUT_SECONDS
else:
return self.triggerTimeout
