def test_write_markers_success(self):
temp_dir = tempfile.mkdtemp()
try:
fid_file = os.path.join(temp_dir, 'foo')
mwriter = MarkersToIMODFiducialFileWriter(fid_file)
fakepoint2model = os.path.join(temp_dir, 'model2point.py')
f = open(fakepoint2model, 'w')
f.write('#!/usr/bin/env python\n\n')
f.write('import sys\n')
f.write('f = open(sys.argv[3], "r")\n')
f.write('data = f.read()\n')
f.write('f.close()\n')
f.write('f = open(sys.argv[4], "w")\n')
f.write('f.write(data)\n')
f.write('f.close()\n')
f.flush()
f.close()
os.chmod(fakepoint2model, stat.S_IRWXU)
mwriter.set_point2model_binary(fakepoint2model)
mlist = MarkersList()
mlist.add_marker(1, 4, 5, 6)
mwriter.write_markers(mlist)
f = open(fid_file, 'r')
data = f.read()
self.assertEqual(data, ' 1 4.000000 5.000000 '
'6.000000\n')
f.close()
finally:
shutil.rmtree(temp_dir)
def test_write_markers_none_passed_in_for_markers(self):
mwriter = MarkersToIMODFiducialFileWriter('foo')
try:
mwriter.write_markers(None)
self.fail('Expected UnsetMarkersListError')
except UnsetMarkersListError as e:
self.assertEqual(str(e), 'markers cannot be None')
def test_write_markers_no_fiducial_file(self):
mwriter = MarkersToIMODFiducialFileWriter(None)
mlist = MarkersList()
mlist.add_marker(1, 4, 5, 6)
try:
mwriter.write_markers(mlist)
self.fail('Expected UnsetFiducialFileError')
except UnsetFiducialFileError as e:
self.assertEqual(str(e), 'Fiducial File is set to None')
def test_get_set_fiducial_file(self):
mwriter = MarkersToIMODFiducialFileWriter(None)
self.assertEqual(mwriter.get_fiducial_file(), None)
mwriter.set_fiducial_file('foo')
self.assertEqual(mwriter.get_fiducial_file(), 'foo')
mwriter = MarkersToIMODFiducialFileWriter('yo')
self.assertEqual(mwriter.get_fiducial_file(), 'yo')
mwriter.set_fiducial_file('foo')
self.assertEqual(mwriter.get_fiducial_file(), 'foo')
def shift_fiducial_file_markers(theargs):
"""Rotates 3DMarkers.txt file
"""
logger.info('Fiducial file set to ' + theargs.inputfidfile)
fac = MarkersFromIMODFiducialFileFactory(theargs.inputfidfile)
markers = fac.get_markers()
markers.shift_markers(theargs.xshift, theargs.yshift, 0)
writer = MarkersToIMODFiducialFileWriter(theargs.outputfidfile)
writer.write_markers(markers)
def test_write_markers_command_fails(self):
temp_dir = tempfile.mkdtemp()
try:
mwriter = MarkersToIMODFiducialFileWriter('foo')
mwriter.set_point2model_binary('false')
try:
mlist = MarkersList()
mwriter.write_markers(mlist)
self.fail('Expected exception')
except Exception as e:
self.assertTrue(str(e).startswith('Non zero exit code when '
'running : false '
'-circle 6 '))
finally:
shutil.rmtree(temp_dir)
