def cleanOptions(options):
options['dialogs'] = 'dialogs' in options
cwd = options.get('p', None)
if options['dialogs']:
if not 'i' in options:
options['i'] = D.askForFile(defaultextension='*.xls',
filetypes=(('Excel classic', '*.xls'),
('Excel', '*.xlsx'),
('All files', '*.*')),
initialdir=cwd,
multiple=False,
title="Cherrypicking Table")
if not 'src' in options:
options['src'] = D.askForFile(
defaultextension='*.xls',
filetypes=(('Excel classic', '*.xls'), ('Excel', '*.xlsx'),
('All files', '*.*')),
initialdir=cwd,
multiple=True,
title="Source samples and their locations")
if not 'o' in options:
options['o'] = D.askForFile(defaultextension='*.gwl',
filetypes=(('Evo Worklist', '*.gwl'),
('Text file', '*.txt'),
('All files', '*.*')),
initialdir=cwd,
multiple=False,
newfile=True,
title="Save Worklist output file as")
options['i'] = F.existingFile(
options['i'],
cwd=cwd,
errmsg='Cannot find cherrypicking input (-i) file.')
options['src'] = U.tolist(options['src'])
msg = 'Cannot find source (-src) file '
options['src'] = [
F.existingFile(f, cwd=cwd, errmsg=msg) for f in options['src']
]
options['o'] = F.absfile(options['o'], cwd=cwd)
options['columns'] = U.tolist(options.get('columns', []))
options['useLabel'] = 'barcode' not in options
return options
def cleanOptions(options):
options['dialogs'] = 'dialogs' in options
options['p'] = F.absfile(options.get('p', ''))
if options['dialogs']:
if not 'i' in options:
options['i'] = D.askForFile(defaultextension='*.xls',
filetypes=(('Excel classic', '*.xls'),
('Excel', '*.xlsx'),
('All files', '*.*')),
initialdir=options['p'],
multiple=False,
title="Definition of Target Reactions")
if not 'src' in options:
options['src'] = D.askForFile(
defaultextension='*.xls',
filetypes=(('Excel classic', '*.xls'), ('Excel', '*.xlsx'),
('All files', '*.*')),
initialdir=options['p'],
multiple=True,
title="Source fragments and their locations")
if not 'o' in options:
options['o'] = D.askForFile(defaultextension='*.gwl',
filetypes=(('Evo Worklist', '*.gwl'),
('Text file', '*.txt'),
('All files', '*.*')),
initialdir=options['p'],
multiple=False,
newfile=True,
title="Save Worklist output file as")
options['i'] = F.absfile(options['i'])
options['src'] = [F.absfile(f) for f in U.tolist(options['src'])]
options['o'] = F.absfile(options['o'])
options['useLabel'] = 'useLabel' in options
## options['srcplate'] = [s.strip() for s in U.tolist(options.get('srcplate',[]))]
return options
def cleanOptions( options ):
options['dialogs'] = 'dialogs' in options
options['p'] = F.absfile( options.get('p', ''))
if options['dialogs']:
if not 'i' in options:
options['i'] = D.askForFile(defaultextension='*.xls',
filetypes=(('Excel classic','*.xls'),('Excel','*.xlsx'),('All files','*.*')),
initialdir=options['p'],
multiple=False,
title="Definition of Target Reactions")
if not 'src' in options:
options['src'] = D.askForFile(defaultextension='*.xls',
filetypes=(('Excel classic','*.xls'),('Excel','*.xlsx'),('All files','*.*')),
initialdir=options['p'],
multiple=True,
title="Source templates and primers and their locations")
if not 'o' in options:
options['o'] = D.askForFile(defaultextension='*.gwl',
filetypes=(('Evo Worklist','*.gwl'),('Text file','*.txt'),('All files','*.*')),
initialdir=options['p'],
multiple=False,
newfile=True,
title="Save Worklist output file as")
options['i'] = F.absfile(options['i'])
options['src'] = [ F.absfile(f) for f in U.tolist(options['src']) ]
options['o'] = F.absfile(options['o'])
options['useLabel'] = 'useLabel' in options
## options['srcplate'] = [s.strip() for s in U.tolist(options.get('srcplate',[]))]
return options